Csa2G109710.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G109710.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 7731741 .. 7732193 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTTGGGGTATGAGGTGAAGCTGGAAGGAGGAGTACGTAATGGCAAGTGAAATGGACAAAGCAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGGAGTGAATGGAATCTAGGACTGGGCATAGATTTCGATGGCGGCACATATTTGGTGGCGACTAATTAG

mRNA sequence

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGGAGTGAATGGAATCTAGGACTGGGCATAGATTTCGATGGCGGCACATATTTGGTGGCGACTAATTAG

Coding sequence (CDS)

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGGAGTGAATGGAATCTAGGACTGGGCATAGATTTCGATGGCGGCACATATTTGGTGGCGACTAATTAG

Protein sequence

MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFDGGTYLVATN*

Homology

[Close]

BLAST of Csa2G109710.1 vs. TrEMBL
Match: A0A0A0LJZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G109710 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 6.7e-70
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60
           MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK
Sbjct: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60

Query: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120
           NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD
Sbjct: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120

Query: 121 GGTYLVATN 130
           GGTYLVATN
Sbjct: 121 GGTYLVATN 129

[Close]

BLAST of Csa2G109710.1 vs. NCBI nr
Match: gi|700206275|gb|KGN61394.1| (hypothetical protein Csa_2G109710 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 9.6e-70
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60
           MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK
Sbjct: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60

Query: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120
           NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD
Sbjct: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120

Query: 121 GGTYLVATN 130
           GGTYLVATN
Sbjct: 121 GGTYLVATN 129

The following BLAST results are available for this feature:

BLAST of Csa2G109710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJZ6_CUCSA	6.7e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G109710 PE=4 SV=1	[more]

BLAST of Csa2G109710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206275\|gb\|KGN61394.1\|	9.6e-70	100.00	hypothetical protein Csa_2G109710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G109710	Csa2G109710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa2G109710.1	Csa2G109710.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa2G109710.1.cds2	Csa2G109710.1.cds2	CDS
Csa2G109710.1.cds1	Csa2G109710.1.cds1	CDS