Csa2G108670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G108670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 7696419 .. 7696864 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGGTACTGTGCTCTCGCGCTTTTATTTATATTCCTCTTTCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCACCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAGGTGGATGTTGGGCCTCATCTTCTACGAGGAGGTAAGGTGTGGGTTTCTTAGTTTAGTGAATATTGGATGAACTCTTTGTAACTTAGGGAGAATTTCATATTTCATGATGTATATATTCTTGCTATGGGTTTCAATCTGAATTCTATGTTTATAAATGGAATGATTGTACTGATGATTGATGACCAATGATTAATCACGT

mRNA sequence

ATGGCGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCACCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG

Coding sequence (CDS)

ATGGCGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCACCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG

Protein sequence

MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFPPRVFFIVD*
Homology
[Close]
BLAST of Csa2G108670 vs. TrEMBL
Match: A0A0A0LJZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60
          MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

[Close]
BLAST of Csa2G108670 vs. NCBI nr
Match: gi|700206270|gb|KGN61389.1| (hypothetical protein Csa_2G108670 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60
          MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

The following BLAST results are available for this feature:
BLAST of Csa2G108670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJZ0_CUCSA9.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1[more]
BLAST of Csa2G108670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206270|gb|KGN61389.1|1.4e-30100.00hypothetical protein Csa_2G108670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU141665cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G108670.1Csa2G108670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU141665CU141665transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G108670CSPI02G08380Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G108670Cucumber (Gy14) v1cgycuB382
Csa2G108670Cucurbita maxima (Rimu)cmacuB793
Csa2G108670Cucurbita moschata (Rifu)cmocuB779
Csa2G108670Melon (DHL92) v3.5.1cumeB132
Csa2G108670Watermelon (97103) v1cuwmB158
Csa2G108670Cucurbita pepo (Zucchini)cpecuB107
Csa2G108670Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G108670Cucumber (Gy14) v2cgybcuB056
Csa2G108670Melon (DHL92) v3.6.1cumedB135
Csa2G108670Wax gourdcuwgoB140