Csa2G108670.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G108670.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 7696419 .. 7696864 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGGTACTGTGCTCTCGCGCTTTTATTTATATTCCTCTTTCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCACCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAGGTGGATGTTGGGCCTCATCTTCTACGAGGAGGTAAGGTGTGGGTTTCTTAGTTTAGTGAATATTGGATGAACTCTTTGTAACTTAGGGAGAATTTCATATTTCATGATGTATATATTCTTGCTATGGGTTTCAATCTGAATTCTATGTTTATAAATGGAATGATTGTACTGATGATTGATGACCAATGATTAATCACGT

mRNA sequence

ATGGCGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCACCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG

Coding sequence (CDS)

ATGGCGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCACCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG

Protein sequence

MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFPPRVFFIVD*
Homology
[Close]
BLAST of Csa2G108670.1 vs. TrEMBL
Match: A0A0A0LJZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60
          MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

[Close]
BLAST of Csa2G108670.1 vs. NCBI nr
Match: gi|700206270|gb|KGN61389.1| (hypothetical protein Csa_2G108670 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60
          MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

The following BLAST results are available for this feature:
BLAST of Csa2G108670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJZ0_CUCSA9.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1[more]
BLAST of Csa2G108670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206270|gb|KGN61389.1|1.4e-30100.00hypothetical protein Csa_2G108670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G108670Csa2G108670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G108670.1Csa2G108670.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G108670.1.cds1Csa2G108670.1.cds1CDS
Csa2G108670.1.cds2Csa2G108670.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G108670.1.utr3p1Csa2G108670.1.utr3p1three_prime_UTR