CSPI02G08380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G08380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 7891665 .. 7892110 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGGTACTGTGCTCTCGCGCTTTTATTTATATTCTTCTTTCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCTCCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAGGTGGATTTTGGGCCTCATCTTCTACGAGGAGGTAAGGTGTGGGTTTCCTAGTTTAGTGAATATTGGATGAACTCTTTGTAACTTAGGGAGAATTTCATATTTCATGATGTATATATTCTTGCTATGGGTTTCAATCTGAATTCTATGTTTATAAATGGAATGATTGTACTGATGATTGATGACCAATGATTAATCACGT

mRNA sequence

ATGGTGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCTCCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG

Coding sequence (CDS)

ATGGTGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCTCCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG
Homology
[Close]
BLAST of CSPI02G08380 vs. TrEMBL
Match: A0A0A0LJZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 1  MVKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPASIPLSFLFHFP 60
          M KHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPA+IPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

[Close]
BLAST of CSPI02G08380 vs. NCBI nr
Match: gi|700206270|gb|KGN61389.1| (hypothetical protein Csa_2G108670 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 1  MVKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPASIPLSFLFHFP 60
          M KHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPA+IPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

The following BLAST results are available for this feature:
BLAST of CSPI02G08380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G08380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJZ0_CUCSA1.2e-2897.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1[more]
BLAST of CSPI02G08380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G08380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206270|gb|KGN61389.1|1.7e-2897.06hypothetical protein Csa_2G108670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G08380.1CSPI02G08380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G08380Csa2G108670Cucumber (Chinese Long) v2cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G08380Melon (DHL92) v3.5.1cpimeB142
CSPI02G08380Watermelon (Charleston Gray)cpiwcgB108
CSPI02G08380Watermelon (97103) v1cpiwmB160
CSPI02G08380Watermelon (97103) v1cpiwmB168
CSPI02G08380Cucurbita pepo (Zucchini)cpecpiB103
CSPI02G08380Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G08380Melon (DHL92) v3.6.1cpimedB135
CSPI02G08380Cucumber (Gy14) v2cgybcpiB056
CSPI02G08380Cucumber (Chinese Long) v3cpicucB080
CSPI02G08380Wax gourdcpiwgoB140
CSPI02G08380Cucumber (Gy14) v1cgycpiB403
CSPI02G08380Cucurbita maxima (Rimu)cmacpiB802
CSPI02G08380Cucurbita moschata (Rifu)cmocpiB784