CSPI02G08380.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G08380.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 7891665 .. 7892110 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGGTACTGTGCTCTCGCGCTTTTATTTATATTCTTCTTTCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCTCCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAGGTGGATTTTGGGCCTCATCTTCTACGAGGAGGTAAGGTGTGGGTTTCCTAGTTTAGTGAATATTGGATGAACTCTTTGTAACTTAGGGAGAATTTCATATTTCATGATGTATATATTCTTGCTATGGGTTTCAATCTGAATTCTATGTTTATAAATGGAATGATTGTACTGATGATTGATGACCAATGATTAATCACGT

mRNA sequence

ATGGTGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCTCCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG

Coding sequence (CDS)

ATGGTGAAGCATTGCAATGCTCCAAAGATTGGCAGAAGGCATGCACGTGTGTCAAAGCACAACGCTATGCTTCGACAAGGGTCCCAAGCGTCACGGCGCTCCTTCCAGTCTAGCTTAAGGGGATCAACCATTTTAGGGATTCCAGCCTCCATTCCCCTCTCCTTTCTCTTCCACTTTCCCCCTAGGGTGTTCTTCATAGTTGATTAG
Homology
[Close]
BLAST of CSPI02G08380.1 vs. TrEMBL
Match: A0A0A0LJZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 1  MVKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPASIPLSFLFHFP 60
          M KHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPA+IPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

[Close]
BLAST of CSPI02G08380.1 vs. NCBI nr
Match: gi|700206270|gb|KGN61389.1| (hypothetical protein Csa_2G108670 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 1  MVKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPASIPLSFLFHFP 60
          M KHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPA+IPLSFLFHFP
Sbjct: 1  MAKHCNAPKIGRRHARVSKHNAMLRQGSQASRRSFQSSLRGSTILGIPATIPLSFLFHFP 60

Query: 61 PRVFFIVD 69
          PRVFFIVD
Sbjct: 61 PRVFFIVD 68

The following BLAST results are available for this feature:
BLAST of CSPI02G08380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G08380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJZ0_CUCSA1.2e-2897.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108670 PE=4 SV=1[more]
BLAST of CSPI02G08380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G08380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206270|gb|KGN61389.1|1.7e-2897.06hypothetical protein Csa_2G108670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G08380CSPI02G08380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G08380.1CSPI02G08380.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G08380.1.cds1CSPI02G08380.1.cds1CDS
CSPI02G08380.1.cds2CSPI02G08380.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G08380.1.utr3p1CSPI02G08380.1.utr3p1three_prime_UTR