Csa2G079090 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G079090
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 6459291 .. 6459575 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAACCCAAAAACCCAACGAATACGTACCAAAAGTGGCTCAAAGGTACTCAAATGCAACTTGGCTTGGGGAGAGGATTGTGGTTCACCTTGGAGAAGCAATCAGCTCGGGCAGGGAACCAGCTTGCGCAGACGTCTACGACTCGACTCTGGTGAAGGACGACTTGCACGCGAATGGGCGGAGCTCAATGGAGGAAACACACAAACGAAGGTTAGGCACAACAAATGGATGGGAATGCATGAAGACCGAACGACTTGGCAAAACAGCTTGGATGTCAACTGA

mRNA sequence

ATGGGTAACCCAAAAACCCAACGAATACGTACCAAAAGTGGCTCAAAGGTACTCAAATGCAACTTGGCTTGGGGAGAGGATTGTGGTTCACCTTGGAGAAGCAATCAGCTCGGGCAGGGAACCAGCTTGCGCAGACGTCTACGACTCGACTCTGGTGAAGGACGACTTGCACGCGAATGGGCGGAGCTCAATGGAGGAAACACACAAACGAAGGTTAGGCACAACAAATGGATGGGAATGCATGAAGACCGAACGACTTGGCAAAACAGCTTGGATGTCAACTGA

Coding sequence (CDS)

ATGGGTAACCCAAAAACCCAACGAATACGTACCAAAAGTGGCTCAAAGGTACTCAAATGCAACTTGGCTTGGGGAGAGGATTGTGGTTCACCTTGGAGAAGCAATCAGCTCGGGCAGGGAACCAGCTTGCGCAGACGTCTACGACTCGACTCTGGTGAAGGACGACTTGCACGCGAATGGGCGGAGCTCAATGGAGGAAACACACAAACGAAGGTTAGGCACAACAAATGGATGGGAATGCATGAAGACCGAACGACTTGGCAAAACAGCTTGGATGTCAACTGA

Protein sequence

MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREWAELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN*
Homology
[Close]
BLAST of Csa2G079090 vs. TrEMBL
Match: A0A0A0LMV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079090 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-50
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60
          MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW
Sbjct: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60

Query: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 95
          AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN
Sbjct: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 94

[Close]
BLAST of Csa2G079090 vs. NCBI nr
Match: gi|700206187|gb|KGN61306.1| (hypothetical protein Csa_2G079090 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60
          MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW
Sbjct: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60

Query: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 95
          AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN
Sbjct: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 94

The following BLAST results are available for this feature:
BLAST of Csa2G079090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMV3_CUCSA7.3e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079090 PE=4 SV=1[more]
BLAST of Csa2G079090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206187|gb|KGN61306.1|1.1e-49100.00hypothetical protein Csa_2G079090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G079090.1Csa2G079090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G079090CsGy2G007860Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G079090Watermelon (97103) v2cuwmbB109
Csa2G079090Wax gourdcuwgoB139
Csa2G079090Cucumber (Gy14) v1cgycuB274
Csa2G079090Cucurbita maxima (Rimu)cmacuB165
Csa2G079090Cucurbita maxima (Rimu)cmacuB786
Csa2G079090Cucurbita moschata (Rifu)cmocuB150
Csa2G079090Cucurbita moschata (Rifu)cmocuB779
Csa2G079090Cucurbita moschata (Rifu)cmocuB787
Csa2G079090Watermelon (Charleston Gray)cuwcgB103
Csa2G079090Watermelon (97103) v1cuwmB156
Csa2G079090Cucurbita pepo (Zucchini)cpecuB098
Csa2G079090Cucurbita pepo (Zucchini)cpecuB811
Csa2G079090Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G079090Melon (DHL92) v3.6.1cumedB129
Csa2G079090Melon (DHL92) v3.6.1cumedB135
Csa2G079090Silver-seed gourdcarcuB0514