Csa2G079090.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G079090.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 6459291 .. 6459575 (+)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAACCCAAAAACCCAACGAATACGTACCAAAAGTGGCTCAAAGGTACTCAAATGCAACTTGGCTTGGGGAGAGGATTGTGGTTCACCTTGGAGAAGCAATCAGCTCGGGCAGGGAACCAGCTTGCGCAGACGTCTACGACTCGACTCTGGTGAAGGACGACTTGCACGCGAATGGGCGGAGCTCAATGGAGGAAACACACAAACGAAGGTTAGGCACAACAAATGGATGGGAATGCATGAAGACCGAACGACTTGGCAAAACAGCTTGGATGTCAACTGA

mRNA sequence

ATGGGTAACCCAAAAACCCAACGAATACGTACCAAAAGTGGCTCAAAGGTACTCAAATGCAACTTGGCTTGGGGAGAGGATTGTGGTTCACCTTGGAGAAGCAATCAGCTCGGGCAGGGAACCAGCTTGCGCAGACGTCTACGACTCGACTCTGGTGAAGGACGACTTGCACGCGAATGGGCGGAGCTCAATGGAGGAAACACACAAACGAAGGTTAGGCACAACAAATGGATGGGAATGCATGAAGACCGAACGACTTGGCAAAACAGCTTGGATGTCAACTGA

Coding sequence (CDS)

ATGGGTAACCCAAAAACCCAACGAATACGTACCAAAAGTGGCTCAAAGGTACTCAAATGCAACTTGGCTTGGGGAGAGGATTGTGGTTCACCTTGGAGAAGCAATCAGCTCGGGCAGGGAACCAGCTTGCGCAGACGTCTACGACTCGACTCTGGTGAAGGACGACTTGCACGCGAATGGGCGGAGCTCAATGGAGGAAACACACAAACGAAGGTTAGGCACAACAAATGGATGGGAATGCATGAAGACCGAACGACTTGGCAAAACAGCTTGGATGTCAACTGA

Protein sequence

MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREWAELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN*
Homology
[Close]
BLAST of Csa2G079090.1 vs. TrEMBL
Match: A0A0A0LMV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079090 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-50
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60
          MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW
Sbjct: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60

Query: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 95
          AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN
Sbjct: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 94

[Close]
BLAST of Csa2G079090.1 vs. NCBI nr
Match: gi|700206187|gb|KGN61306.1| (hypothetical protein Csa_2G079090 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60
          MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW
Sbjct: 1  MGNPKTQRIRTKSGSKVLKCNLAWGEDCGSPWRSNQLGQGTSLRRRLRLDSGEGRLAREW 60

Query: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 95
          AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN
Sbjct: 61 AELNGGNTQTKVRHNKWMGMHEDRTTWQNSLDVN 94

The following BLAST results are available for this feature:
BLAST of Csa2G079090.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMV3_CUCSA7.3e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079090 PE=4 SV=1[more]
BLAST of Csa2G079090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206187|gb|KGN61306.1|1.1e-49100.00hypothetical protein Csa_2G079090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G079090Csa2G079090gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G079090.1Csa2G079090.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G079090.1.cds1Csa2G079090.1.cds1CDS