Csa2G070930 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G070930
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDefensin-like protein 51
LocationChr2 : 5565400 .. 5565564 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGCGAAAGGAGACATTTTGAACGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGCTGCTGCAATGTTTGA

mRNA sequence

ATGACAGCGAAAGGAGACATTTTGAACGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGCTGCTGCAATGTTTGA

Coding sequence (CDS)

ATGACAGCGAAAGGAGACATTTTGAACGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGCTGCTGCAATGTTTGA

Protein sequence

MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV*
Homology
[Close]
BLAST of Csa2G070930 vs. TrEMBL
Match: A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.1e-27
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 55
          MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]
BLAST of Csa2G070930 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 55
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 75

[Close]
BLAST of Csa2G070930 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 54
          T KGD+LNVHCVRPC DTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN
Sbjct: 23 TTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 74

[Close]
BLAST of Csa2G070930 vs. NCBI nr
Match: gi|700206108|gb|KGN61227.1| (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 7.3e-27
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 55
          MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]
BLAST of Csa2G070930 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 55
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 75

[Close]
BLAST of Csa2G070930 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 54
          T KGD+LNVHCVRPC DTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN
Sbjct: 23 TTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 74

The following BLAST results are available for this feature:
BLAST of Csa2G070930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF5_CUCSA5.1e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0LHG9_CUCSA2.1e-2594.34Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG5_CUCSA1.1e-2494.23Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1[more]
BLAST of Csa2G070930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206108|gb|KGN61227.1|7.3e-27100.00hypothetical protein Csa_2G070930 [Cucumis sativus][more]
gi|700206109|gb|KGN61228.1|3.1e-2594.34hypothetical protein Csa_2G071930 [Cucumis sativus][more]
gi|700206110|gb|KGN61229.1|1.5e-2494.23hypothetical protein Csa_2G072430 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G070930.1Csa2G070930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD864278coord: 4..52
score: 0