CmoCh05G007820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G007820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 4482594 .. 4485063 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCGTGTTGGGAAGATTCGACCTGACTCGTCTCCTTCATTCGACTTGTACGCGACTTGGTTCAGCACCCGCAACCTGATCCATCCATTTGACCTAACTCAATCTTGCACACCAACAGGAACACACCACATATCATTACGAGAATAATCGCAAAAATTCTTACACTACTGAGAATCGAATGCACGTCGTGGGATTTGATATGTCCAATCAACGCGTGCCACATGTCACACATCAGGCACGACTTTTTTGCCTTAGGCATGTGGTACTTGCGCATGAGGGTCGCATGTGGTGAACCTATACTCACGTGTGAGGGTGTGTGCAAGGAGAGCTTTATTCCATTTAACCTTTGTTTGTGAGTATTTTGTCTCGATTTTGATACTAACCCTAATTTTGCTCGAATTAAGACCTACGGAAAAAAATTTAGAAATTTTGGAACCTCTAACACACAGAAAAAAGCTAGCTCATGAAAGCACGAGTCATCTATGTAAGTAGCCATACGGACTTTAAGCAAGTAATACTTGTAGGGATTGCTAAAACGTGCAAACATGCAACATTCCTTACATTAGGTAGTCTGAAATGCATGTTTAGGACTACAGAATGGTAATTTTGGATCTGTATACATTGTTTGCATGCTATGAAAATTTAACGTAATGCCCCAAAGAAGAGATTACAAGATGCAAGTTGGACAACATCGACAAGTAAACTATGTAAGATGTAAAAAATTACCAAAATACCCCCTGAGATAAGATTTGTGATGAATGCTATTTTAAATTCTTTCCATTGTGTTATAAGTGAGGATGGACTATACCTCGTTAGGACTTGCGTGTTTCTCGTGTTGTATGCTTTTAATTCTCGTGAAATTTTGTCGTGTTGTTGTACTTTTATTTTAATTTTAATTTTTACTTTTATTTGCCTTCGTCTTGTCTTTGAATCACAGTTCGAGATTCGAAACCTTGAAAATCGGATCGTGACAATGCACGTCTTATAGGAAATTCATGTCATGAAAAATATGAAAGTATTGTATATCATAGCTCATGTACCATGATTTTAAATGCACGACCTCATACATGTATGCCTTTTATTTGCTTTCATCTTGTCTTTTAGTCACGGTCTGAAATTCGAAACTCGAAAATCGAGTCCTGACCATGCATGTTTTATAGGGAATTCATGTCACGAAAAATATGAAAGGGTTATGTGCTTCATAGCTCATGTACCATTATTTTAAATGCAGGACCTCGTATATGATTGTCACAAGCATGACTTACTTATCTAATATATAACATGCGAACATGCACACCACGATATGATACACATTTCTTTCTTATGGTTTTTGTGTATATTAGCCCGTAGTTAGACATAGTGTAACTGTCACGATCAAATTTTCGAGGTTCCGTGTAACAGTTCAAGTTCACTGTTAGCAAATAATGTCCGCTTTTGCCCGTTACGTATTGTTATCAGCATCACGGTTTTAAAATGTGTCTATTATGAAGAGGGTTATACTCTAATTAGTGTCTCGCACCTTCCAGTGACTGGCTCTGATACCATTTGTAACAACTCATGTTCACCGCTAATAGATATTATTCACTTTGGCCCGTTATGTATCGTCGTCAGCCTCACAGTTTAAAAACAAGTCGGTTAGGGAGAAGGTTCCACACCTTTATAAGGAATGCTTTGTTCCCCTCTCCACTGATGTTGGATCTTACAATAGCAAATCAGAGTGGCGCTGCGGAAGCGTGGTGACCCCATAACCCACAGGTTGAAACTTGGCAGCTTTGATATTATTTCTAAACCCGAAACCTAGCTCTGATACCATTTCTACACAGCCCAGATATTATTTCTAAACCCGAAACCTAGCTCTGATACCATTTCTACACAGCCCATCTATTCTACGCAGGATGTTTTGTTTTCATGAGCGAAATAAGTATCTATTAATATTGTTTACTAATATTAACACAATTTTTCCATAGAAGTGTTGGTTTTCCAAAACCAAATTTACACCATTACTTTACCTTTTATGGCTTCTTTAACACTCTGTGCCTTCTAAATTAACACTATAAATAATCACAGTTCTTAATTTTAAAAAACACACCCTTCTCAGTTATTAATCTCCTACAACTAAAAATATTCACAAAAGAAATTTAAAACACATGGCAACTCATAAGCTTGTTACGATGTTCATGGTTATCCTCATCATTTTCTCTTCTTTTGTATCCTCAGGTATGCTTTGATTCATAATCTTTATTTTTTTATGTGTTCTTTTGTTAGAATAATATTTCAGGCAACCTTAATCTTTGGTAATATGGCAGCCAAAGGAGACGTGTTCATGAATTGTATTGGACCGTGTTCTGACACTTACGATCACTATTCATGTTATAATGATTGTGTGGAACAGAATGAAGGTGCTGGATTTTGTTATCCCAAACTGGGAGACGATTCTAATGAAAAAGATTGTTGTTGCAATTATTGA

mRNA sequence

ATGACGCGTGTTGGGAAGATTCGACCTGACTCGTCTCCTTCATTCGACTTAATAATATTTCAGGCAACCTTAATCTTTGGTAATATGGCAGCCAAAGGAGACGTGTTCATGAATTGTATTGGACCGTGTTCTGACACTTACGATCACTATTCATGTTATAATGATTGTGTGGAACAGAATGAAGGTGCTGGATTTTGTTATCCCAAACTGGGAGACGATTCTAATGAAAAAGATTGTTGTTGCAATTATTGA

Coding sequence (CDS)

ATGACGCGTGTTGGGAAGATTCGACCTGACTCGTCTCCTTCATTCGACTTAATAATATTTCAGGCAACCTTAATCTTTGGTAATATGGCAGCCAAAGGAGACGTGTTCATGAATTGTATTGGACCGTGTTCTGACACTTACGATCACTATTCATGTTATAATGATTGTGTGGAACAGAATGAAGGTGCTGGATTTTGTTATCCCAAACTGGGAGACGATTCTAATGAAAAAGATTGTTGTTGCAATTATTGA
Homology
[Close]
BLAST of CmoCh05G007820 vs. TrEMBL
Match: A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-14
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 29 MAAKGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          M AKGD+  ++C+ PCSDTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 53

[Close]
BLAST of CmoCh05G007820 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 24 LIFGNMAA--KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCC 83
          +IF  +A+  KGDV  ++C+ PCSDTYD  SCYNDC+++N GAGFCYPKL   S +KDCC
Sbjct: 15 MIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKL--PSTDKDCC 74

[Close]
BLAST of CmoCh05G007820 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-12
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 32 KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          KGDV  ++C+ PC DTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 74

[Close]
BLAST of CmoCh05G007820 vs. TrEMBL
Match: A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 

Query: 32 KGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          +GD   NC+ PCS+      C   C+EQ+EGAGFC PKL   S+ K CCCN
Sbjct: 25 EGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: gi|700206108|gb|KGN61227.1| (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.1e-14
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 29 MAAKGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          M AKGD+  ++C+ PCSDTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 53

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 24 LIFGNMAA--KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCC 83
          +IF  +A+  KGDV  ++C+ PCSDTYD  SCYNDC+++N GAGFCYPKL   S +KDCC
Sbjct: 15 MIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKL--PSTDKDCC 74

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-12
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 32 KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          KGDV  ++C+ PC DTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 74

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: gi|700199339|gb|KGN54497.1| (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 

Query: 32 KGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          +GD   NC+ PCS+      C   C+EQ+EGAGFC PKL   S+ K CCCN
Sbjct: 25 EGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:
BLAST of CmoCh05G007820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G007820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF5_CUCSA5.7e-1465.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0LHG9_CUCSA1.7e-1361.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG5_CUCSA3.1e-1265.38Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0L1R8_CUCSA8.8e-0750.98Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1[more]
BLAST of CmoCh05G007820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G007820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206108|gb|KGN61227.1|8.1e-1465.45hypothetical protein Csa_2G070930 [Cucumis sativus][more]
gi|700206109|gb|KGN61228.1|2.4e-1361.29hypothetical protein Csa_2G071930 [Cucumis sativus][more]
gi|700206110|gb|KGN61229.1|4.5e-1265.38hypothetical protein Csa_2G072430 [Cucumis sativus][more]
gi|700199339|gb|KGN54497.1|1.3e-0650.98hypothetical protein Csa_4G339000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G007820.1CmoCh05G007820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G007820Csa2G070930Cucumber (Chinese Long) v2cmocuB779
CmoCh05G007820ClCG11G011130Watermelon (Charleston Gray)cmowcgB696
CmoCh05G007820CSPI02G06900Wild cucumber (PI 183967)cmocpiB784
CmoCh05G007820CsaV3_2G009310Cucumber (Chinese Long) v3cmocucB0920
CmoCh05G007820Cla97C11G217270Watermelon (97103) v2cmowmbB784
CmoCh05G007820CsGy2G007080Cucumber (Gy14) v2cgybcmoB240
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G007820Cucumber (Gy14) v1cgycmoB0510
CmoCh05G007820Cucurbita maxima (Rimu)cmacmoB191
CmoCh05G007820Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G007820Melon (DHL92) v3.5.1cmomeB725
CmoCh05G007820Watermelon (97103) v1cmowmB764
CmoCh05G007820Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G007820Cucurbita pepo (Zucchini)cmocpeB743
CmoCh05G007820Bottle gourd (USVL1VR-Ls)cmolsiB703
CmoCh05G007820Melon (DHL92) v3.6.1cmomedB822
CmoCh05G007820Silver-seed gourdcarcmoB0009
CmoCh05G007820Silver-seed gourdcarcmoB0232
CmoCh05G007820Cucurbita moschata (Rifu)cmocmoB149