CsGy2G007080 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G007080
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	low-molecular-weight cysteine-rich 48
Location	Chr2 : 5642984 .. 5643306 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCCAAAAGCTTGCTACAATGTCAATTGTTGTTTGTATGATATTTGCATGTATTGTATCAACAAGTATGCTTTTAACGATTCTTAGCTTCTCTAATTCCATAAAATTATTTTTGCTAGAACAATGTTTTAAACAATGTTATTTTTTGGTAATATGACAGCGAAAGGAGACATTTTGAACGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGCTGCTGCAATGTTTGA

mRNA sequence

ATGGCAACCCAAAAGCTTGCTACAATGTCAATTGTTGTTTGTATGATATTTGCATGTATTGTATCAACAACGAAAGGAGACATTTTGAACGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGCTGCTGCAATGTTTGA

Coding sequence (CDS)

ATGGCAACCCAAAAGCTTGCTACAATGTCAATTGTTGTTTGTATGATATTTGCATGTATTGTATCAACAACGAAAGGAGACATTTTGAACGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGCTGCTGCAATGTTTGA

Protein sequence

MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV

Homology

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BLAST of CsGy2G007080 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 8.6e-35
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+SIVV MIFACI STTKGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]

BLAST of CsGy2G007080 vs. NCBI nr
Match: KGN61229.1 (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+SIVV +IF CIVSTTKGD+LNVHCVRPC DTYDDESCYNDCIRENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]

BLAST of CsGy2G007080 vs. NCBI nr
Match: KGN61227.1 (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 23 TTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 76
          T KGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]

BLAST of CsGy2G007080 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 1  MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          M TQKL  +S++V + F+C  S+ +GD L  +CV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

[Close]

BLAST of CsGy2G007080 vs. TrEMBL
Match: tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.7e-35
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+SIVV MIFACI STTKGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]

BLAST of CsGy2G007080 vs. TrEMBL
Match: tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+SIVV +IF CIVSTTKGD+LNVHCVRPC DTYDDESCYNDCIRENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]

BLAST of CsGy2G007080 vs. TrEMBL
Match: tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.3e-26
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 23 TTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 76
          T KGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]

BLAST of CsGy2G007080 vs. TrEMBL
Match: tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.2e-09
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 1  MATQKLATMSIVVCMIFACIVSTTKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          M TQKL  +S++V + F+C  S+ +GD L  +CV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:

BLAST of CsGy2G007080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61228.1	8.6e-35	93.33	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
KGN61229.1	2.1e-33	91.89	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]
KGN61227.1	1.2e-25	98.11	hypothetical protein Csa_2G070930 [Cucumis sativus]	[more]
KGN54497.1	1.4e-08	48.68	hypothetical protein Csa_4G339000 [Cucumis sativus]	[more]

BLAST of CsGy2G007080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G007080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G007080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHG9\|A0A0A0LHG9_CUCSA	5.7e-35	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
tr\|A0A0A0LJG5\|A0A0A0LJG5_CUCSA	1.4e-33	91.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
tr\|A0A0A0LKF5\|A0A0A0LKF5_CUCSA	8.3e-26	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]
tr\|A0A0A0L1R8\|A0A0A0L1R8_CUCSA	9.2e-09	48.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G007080.1	CsGy2G007080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRODOM	PD864278		coord: 20..73 e-value: 2.0E-4 score: 100.0
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G007080	Csa2G070930	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G007080	ClCG11G011130	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G007080	CSPI02G06900	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G007080	CmoCh05G007820	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G007080	Lsi11G008360	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G007080	CsaV3_2G009310	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G007080	Cla97C11G217270	Watermelon (97103) v2	cgybwmbB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G007080	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G007080	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G007080	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G007080	Cucurbita pepo (Zucchini)	cgybcpeB163
CsGy2G007080	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G007080	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G007080	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G007080	Watermelon (97103) v1	cgybwmB155
CsGy2G007080	Silver-seed gourd	carcgybB0004
CsGy2G007080	Silver-seed gourd	carcgybB0179
CsGy2G007080	Wax gourd	cgybwgoB132