Csa2G070240 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G070240
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr2 : 5377024 .. 5378134 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGGCATTTGCCTACATAAGGAAAAGAAAATTCTACAGATTAGGTGAATTCCTCAGGGATGTTGGTCTTGGAAGGAAAAATGTGGGGAATCTTTTATGGAATCTTCTACTTCTATCTTATGCTGCCAATTTTAAAATGAAAAGTTTGCAGCGAGAATTTCTACAAATGGTTGACGCTGGATTCAATCCAGATCTTACAACATTTAACATTAGAGCTCTAGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACACATGAAGCATATGAATATTGAACCCGATCTTGTGACCTACGGTTGTGTTGTTGATGCTTATGTCGATCGAAGACTTGGAAGAAATTTGGAATTCATTTTGAGCAAAATGAATCCAGATCAACCTCCAGTATCATTAACAGACTCTTTCGTTTTCGAGGCATTGGGTAAAGGAGACTTCCACATGAGTTCTGAGGCGTTCATGCAATTTCGAAAGCAGAAGAAATGGACTTATAGAGAATTAATATCATTGTATCTGAAAAAGCACCACAGGAGAAACCAAGTCTTTTGGAATTACTAACCCAGAACGTTATTTGATAACGTCTTCTCCCAGCTAAGACTAGAGGATTGTTTTCTGTACCTGAGTTTGGGGAATTCAAATGGACTGAAATGATCAAGTTGATTCTTAGAATTGAATGGTAATGTTTCCAGCTGTGTTCTTCATCCCTAACTCAGCTGGGTGGTGTACAGTGTAATTTAAAGGATGTGTTTGATATTTGTTATATATTGTTTAATAATCATCCTTTCCTAGCTCAAGTTTTGATTTGGTTAACTTCAAGAAAGTCTCTTGTTTCTGGTGACATCGAGCTATACAATGATCTCCTCCACCCTTTGAATGGAAAATTTTAAGCCAACAAGGATGGAAATGTCGATTCCCTCATCCAAATTCCAATCCATCCATTCTTTACTCTGTCGTATCAGCACTCATCAATTAAGGGCAATTGAGCAATTTGTTGCTTAATCTGTTTTGATTTACTGTTTGGATTTTAGTTCACACTTGTAGATGTGTAGTTCCTAGTTTGTTTTCAATTATCCATATACAGAGAATTCCTAACGATTTGA

mRNA sequence

ATGGCATTTGCCTACATAAGGAAAAGAAAATTCTACAGATTAGGTGAATTCCTCAGGGATGTTGGTCTTGGAAGGAAAAATGTGGGGAATCTTTTATGGAATCTTCTACTTCTATCTTATGCTGCCAATTTTAAAATGAAAAGTTTGCAGCGAGAATTTCTACAAATGGTTGACGCTGGATTCAATCCAGATCTTACAACATTTAACATTAGAGCTCTAGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACACATGAAGCATATGAATATTGAACCCGATCTTGTGACCTACGGTTGTGTTGTTGATGCTTATGTCGATCGAAGACTTGGAAGAAATTTGGAATTCATTTTGAGCAAAATGAATCCAGATCAACCTCCAGTATCATTAACAGACTCTTTCGTTTTCGAGGCATTGGGTAAAGGAGACTTCCACATGAGTTCTGAGGCGTTCATGCAATTTCGAAAGCAGAAGAAATGGACTTATAGAGAATTAATATCATTGTATCTGAAAAAGCACCACAGGAGAAACCAAGTCTTTTGGAATTACTAA

Coding sequence (CDS)

ATGGCATTTGCCTACATAAGGAAAAGAAAATTCTACAGATTAGGTGAATTCCTCAGGGATGTTGGTCTTGGAAGGAAAAATGTGGGGAATCTTTTATGGAATCTTCTACTTCTATCTTATGCTGCCAATTTTAAAATGAAAAGTTTGCAGCGAGAATTTCTACAAATGGTTGACGCTGGATTCAATCCAGATCTTACAACATTTAACATTAGAGCTCTAGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACACATGAAGCATATGAATATTGAACCCGATCTTGTGACCTACGGTTGTGTTGTTGATGCTTATGTCGATCGAAGACTTGGAAGAAATTTGGAATTCATTTTGAGCAAAATGAATCCAGATCAACCTCCAGTATCATTAACAGACTCTTTCGTTTTCGAGGCATTGGGTAAAGGAGACTTCCACATGAGTTCTGAGGCGTTCATGCAATTTCGAAAGCAGAAGAAATGGACTTATAGAGAATTAATATCATTGTATCTGAAAAAGCACCACAGGAGAAACCAAGTCTTTTGGAATTACTAA

Protein sequence

MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLEFILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHRRNQVFWNY*

Homology

[Close]

BLAST of Csa2G070240 vs. Swiss-Prot
Match: PP263_ARATH (Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-76
Identity = 131/188 (69.68%), Postives = 159/188 (84.57%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           +  AY+++RKFYRL EFL DVGLGR+N+GN+LWN +LLSYAA+FKMKSLQREF+ M+DAG
Sbjct: 228 VVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAG 287

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F+PDLTTFNIRALAFSRM L WDLHL+LEHM+ +NI PDLVT+GCVVDAY+D+RL RNLE
Sbjct: 288 FSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLE 347

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F+ ++MN D  P+ LTD   FE LGKGDFH+SSEA ++F  +K WTYR+LI +YLKK  R
Sbjct: 348 FVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLR 407

Query: 181 RNQVFWNY 189
           R+Q+FWNY
Sbjct: 408 RDQIFWNY 415

[Close]

BLAST of Csa2G070240 vs. Swiss-Prot
Match: PP310_ARATH (Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-11
Identity = 56/183 (30.60%), Postives = 77/183 (42.08%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           +A  YI    F RL +  R +   R     L W L LL +A     K L     +M +A 
Sbjct: 313 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEAR 372

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
              + T  NI  LA+S+M     + L L  ++  +++ DLVT G V D    R  G  + 
Sbjct: 373 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVF 432

Query: 121 FILSKMN-PDQPPVSLTDSFVFEALGKGDFHMSSEAF------MQFRKQKKWTYRELISL 177
               K+   D+P    TD  V  A GKG F  S E         +  + K WTY+ L+ L
Sbjct: 433 MTWKKIGFLDKPVEMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMEL 492

[Close]

BLAST of Csa2G070240 vs. TrEMBL
Match: A0A0A0LMJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070240 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 5.5e-105
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG
Sbjct: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE
Sbjct: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR
Sbjct: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180

Query: 181 RNQVFWNY 189
           RNQVFWNY
Sbjct: 181 RNQVFWNY 188

[Close]

BLAST of Csa2G070240 vs. TrEMBL
Match: A0A067K0T9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14439 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.4e-83
Identity = 145/188 (77.13%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFA+IR+RKFYRLGEFLRDVGLGR++VGNLLWN LLLSYAANFKMKSLQREFL+M +AG
Sbjct: 242 MAFAFIRERKFYRLGEFLRDVGLGRRDVGNLLWNFLLLSYAANFKMKSLQREFLRMSEAG 301

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F PDLTTFNIRALAFSRM L WDLHLSLEHMK+  + PDLVTYGC VDAY+DRRLG+NL+
Sbjct: 302 FRPDLTTFNIRALAFSRMSLFWDLHLSLEHMKYEKVSPDLVTYGCFVDAYLDRRLGKNLD 361

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F+L+KMN D+ PV  TD FVFE LGKGDFH S+EAF++F+++KKWTY+EL+SLYL+K +R
Sbjct: 362 FVLNKMNLDESPVVSTDPFVFEVLGKGDFHSSAEAFLEFKRKKKWTYKELVSLYLRKQYR 421

Query: 181 RNQVFWNY 189
            NQ+FWNY
Sbjct: 422 SNQIFWNY 429

[Close]

BLAST of Csa2G070240 vs. TrEMBL
Match: B9RDM7_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1614490 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.8e-82
Identity = 139/188 (73.94%), Postives = 171/188 (90.96%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           ++ AY+++RKFYRLGEFLRDVGLGRK+VGNL+WN LLLS+AANFKMKSLQREFL+M++AG
Sbjct: 240 VSLAYVKERKFYRLGEFLRDVGLGRKDVGNLIWNFLLLSFAANFKMKSLQREFLRMLEAG 299

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F+PD+TTFNIRALAFSRM LLWDLHL+LEHMKH  + PD+VTYGC+VDAY+DRRLG+NL+
Sbjct: 300 FHPDVTTFNIRALAFSRMSLLWDLHLTLEHMKHEKVSPDIVTYGCIVDAYLDRRLGKNLD 359

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F + KMN D  PV LTD FVFE LGKGDFH S+EAF++F++Q+KWTYREL+S+YL+K +R
Sbjct: 360 FAIKKMNLDGSPVLLTDPFVFEVLGKGDFHSSAEAFLEFKRQRKWTYRELVSIYLRKQYR 419

Query: 181 RNQVFWNY 189
            NQ+FWNY
Sbjct: 420 SNQIFWNY 427

[Close]

BLAST of Csa2G070240 vs. TrEMBL
Match: A0A151S0P5_CAJCA (Pentatricopeptide repeat-containing protein At3g42630 family (Fragment) OS=Cajanus cajan GN=KK1_029911 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 6.5e-82
Identity = 145/188 (77.13%), Postives = 168/188 (89.36%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MA AYI++RKFY LGEFLRDVGLGRKNVG+LLWNL+LLSYAANFKMKSLQREF++MV++G
Sbjct: 188 MASAYIKERKFYELGEFLRDVGLGRKNVGSLLWNLMLLSYAANFKMKSLQREFIKMVESG 247

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F PD+TTFNIRALAFSRM L WDLHLS+EHM+H N+ PDLVT+GCVVDAY+DRRLGRNL+
Sbjct: 248 FRPDITTFNIRALAFSRMALFWDLHLSIEHMEHENVIPDLVTFGCVVDAYLDRRLGRNLD 307

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F L+KMN D  P  LTD FV+EALGKGDF MSSEAF +F+ Q++WTYR LI  YLKKH+R
Sbjct: 308 FALNKMNLDDSPQLLTDPFVYEALGKGDFQMSSEAFFEFKTQRQWTYRVLIQKYLKKHYR 367

Query: 181 RNQVFWNY 189
           RNQ+FWNY
Sbjct: 368 RNQIFWNY 375

[Close]

BLAST of Csa2G070240 vs. TrEMBL
Match: U5FGF9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s14360g PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.2e-81
Identity = 143/188 (76.06%), Postives = 164/188 (87.23%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           M+FAYI++RKFY L EFLRDVGLGRKN+GNL+WNLLLLSY+ANFKMK+LQREFL M++AG
Sbjct: 205 MSFAYIKERKFYGLSEFLRDVGLGRKNLGNLIWNLLLLSYSANFKMKTLQREFLNMLEAG 264

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F+PDLTTFNIRALAFSRM LLWDLHL LEHMKH  + PDLVTYGC+VDAY+DRRL RNLE
Sbjct: 265 FHPDLTTFNIRALAFSRMSLLWDLHLGLEHMKHDKVAPDLVTYGCIVDAYLDRRLVRNLE 324

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F LSKM+ D  PV  TD FVFE  GKGDFH SSEAFM+F++Q+KWTYRELI +YL+K HR
Sbjct: 325 FALSKMHVDNSPVLSTDPFVFEVFGKGDFHSSSEAFMEFKRQRKWTYRELIKIYLRKQHR 384

Query: 181 RNQVFWNY 189
              +FWNY
Sbjct: 385 SKHIFWNY 392

[Close]

BLAST of Csa2G070240 vs. TAIR10
Match: AT3G42630.1 (AT3G42630.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 286.2 bits (731), Expect = 1.5e-77
Identity = 131/188 (69.68%), Postives = 159/188 (84.57%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           +  AY+++RKFYRL EFL DVGLGR+N+GN+LWN +LLSYAA+FKMKSLQREF+ M+DAG
Sbjct: 228 VVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAG 287

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F+PDLTTFNIRALAFSRM L WDLHL+LEHM+ +NI PDLVT+GCVVDAY+D+RL RNLE
Sbjct: 288 FSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLE 347

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F+ ++MN D  P+ LTD   FE LGKGDFH+SSEA ++F  +K WTYR+LI +YLKK  R
Sbjct: 348 FVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLR 407

Query: 181 RNQVFWNY 189
           R+Q+FWNY
Sbjct: 408 RDQIFWNY 415

[Close]

BLAST of Csa2G070240 vs. TAIR10
Match: AT4G14190.1 (AT4G14190.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-12
Identity = 56/183 (30.60%), Postives = 77/183 (42.08%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           +A  YI    F RL +  R +   R     L W L LL +A     K L     +M +A 
Sbjct: 313 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEAR 372

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
              + T  NI  LA+S+M     + L L  ++  +++ DLVT G V D    R  G  + 
Sbjct: 373 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVF 432

Query: 121 FILSKMN-PDQPPVSLTDSFVFEALGKGDFHMSSEAF------MQFRKQKKWTYRELISL 177
               K+   D+P    TD  V  A GKG F  S E         +  + K WTY+ L+ L
Sbjct: 433 MTWKKIGFLDKPVEMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMEL 492

[Close]

BLAST of Csa2G070240 vs. TAIR10
Match: AT2G18940.1 (AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-07
Identity = 33/101 (32.67%), Postives = 45/101 (44.55%), Query Frame = 1


Query: 33  WNLLLLSYAANFKMKSL---QREFLQMVDAGFNPDLTTFNIRALAFSRMDLLWDLHLSLE 92
           W LL     ANFK ++L   +R F      G+ PD+  FN     F+R ++       LE
Sbjct: 596 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILE 655

Query: 93  HMKHMNIEPDLVTYGCVVDAYVDRRLGRNLEFILSKMNPDQ 131
            ++   + PDLVTY  ++D YV R      E IL  +   Q
Sbjct: 656 SIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

HSP 2 Score: 39.7 bits (91), Expect = 2.4e-03
Identity = 30/123 (24.39%), Postives = 47/123 (38.21%), Query Frame = 1


Query: 33  WNLLLLSYAANFKMKSLQREFLQMVDAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMK 92
           WN +L         K + R F +M   GF PD  TFN    A+ R     D       M 
Sbjct: 459 WNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMT 518

Query: 93  HMNIEPDLVTYGCVVDAYVDRRLGRNLEFILSKM-NPDQPPVSLTDSFVFEALGKGDFHM 152
                  + TY  +++A   +   R+ E ++S M +    P   + S + +   KG  ++
Sbjct: 519 RAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYL 578

Query: 153 SSE 155
             E
Sbjct: 579 GIE 581

[Close]

BLAST of Csa2G070240 vs. TAIR10
Match: AT1G80150.1 (AT1G80150.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.8e-06
Identity = 35/159 (22.01%), Postives = 65/159 (40.88%), Query Frame = 1


Query: 28  VGNLLWNLLLLSYAANFKMKSLQREFLQMVDAGFNPDLTTFNIRALAFSRMDLLWDLHLS 87
           +GN LWNL++L                     G  P+LTTFN+R          WD +  
Sbjct: 230 IGNGLWNLMVLK--------------------GCKPNLTTFNVRIQFLVNRRRAWDANDL 289

Query: 88  LEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLEFILSKMNPD--QPPVSLTDSFVFEALG 147
           L  M  + +EPD +TY  V+  +   R     E + + M+    +P + +  + +     
Sbjct: 290 LLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCK 349

Query: 148 KGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHRRNQV 185
            G+F ++        ++K +   + + + LK   ++ Q+
Sbjct: 350 AGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQL 368

[Close]

BLAST of Csa2G070240 vs. NCBI nr
Match: gi|778667690|ref|XP_011648974.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis sativus])

HSP 1 Score: 388.3 bits (996), Expect = 7.8e-105
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG
Sbjct: 236 MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 295

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE
Sbjct: 296 FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 355

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR
Sbjct: 356 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 415

Query: 181 RNQVFWNY 189
           RNQVFWNY
Sbjct: 416 RNQVFWNY 423

[Close]

BLAST of Csa2G070240 vs. NCBI nr
Match: gi|700206087|gb|KGN61206.1| (hypothetical protein Csa_2G070240 [Cucumis sativus])

HSP 1 Score: 388.3 bits (996), Expect = 7.8e-105
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG
Sbjct: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE
Sbjct: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR
Sbjct: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180

Query: 181 RNQVFWNY 189
           RNQVFWNY
Sbjct: 181 RNQVFWNY 188

[Close]

BLAST of Csa2G070240 vs. NCBI nr
Match: gi|659069563|ref|XP_008450656.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis melo])

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-102
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMV+AG
Sbjct: 238 MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVEAG 297

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE
Sbjct: 298 FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 357

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           FILSKMNP QPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKK HR
Sbjct: 358 FILSKMNPVQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKQHR 417

Query: 181 RNQVFWNY 189
           RNQVFWNY
Sbjct: 418 RNQVFWNY 425

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BLAST of Csa2G070240 vs. NCBI nr
Match: gi|802696186|ref|XP_012083448.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas])

HSP 1 Score: 315.8 bits (808), Expect = 4.9e-83
Identity = 145/188 (77.13%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFA+IR+RKFYRLGEFLRDVGLGR++VGNLLWN LLLSYAANFKMKSLQREFL+M +AG
Sbjct: 242 MAFAFIRERKFYRLGEFLRDVGLGRRDVGNLLWNFLLLSYAANFKMKSLQREFLRMSEAG 301

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F PDLTTFNIRALAFSRM L WDLHLSLEHMK+  + PDLVTYGC VDAY+DRRLG+NL+
Sbjct: 302 FRPDLTTFNIRALAFSRMSLFWDLHLSLEHMKYEKVSPDLVTYGCFVDAYLDRRLGKNLD 361

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F+L+KMN D+ PV  TD FVFE LGKGDFH S+EAF++F+++KKWTY+EL+SLYL+K +R
Sbjct: 362 FVLNKMNLDESPVVSTDPFVFEVLGKGDFHSSAEAFLEFKRKKKWTYKELVSLYLRKQYR 421

Query: 181 RNQVFWNY 189
            NQ+FWNY
Sbjct: 422 SNQIFWNY 429

[Close]

BLAST of Csa2G070240 vs. NCBI nr
Match: gi|802696190|ref|XP_012083449.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X2 [Jatropha curcas])

HSP 1 Score: 315.8 bits (808), Expect = 4.9e-83
Identity = 145/188 (77.13%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 1   MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 60
           MAFA+IR+RKFYRLGEFLRDVGLGR++VGNLLWN LLLSYAANFKMKSLQREFL+M +AG
Sbjct: 167 MAFAFIRERKFYRLGEFLRDVGLGRRDVGNLLWNFLLLSYAANFKMKSLQREFLRMSEAG 226

Query: 61  FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 120
           F PDLTTFNIRALAFSRM L WDLHLSLEHMK+  + PDLVTYGC VDAY+DRRLG+NL+
Sbjct: 227 FRPDLTTFNIRALAFSRMSLFWDLHLSLEHMKYEKVSPDLVTYGCFVDAYLDRRLGKNLD 286

Query: 121 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 180
           F+L+KMN D+ PV  TD FVFE LGKGDFH S+EAF++F+++KKWTY+EL+SLYL+K +R
Sbjct: 287 FVLNKMNLDESPVVSTDPFVFEVLGKGDFHSSAEAFLEFKRKKKWTYKELVSLYLRKQYR 346

Query: 181 RNQVFWNY 189
            NQ+FWNY
Sbjct: 347 SNQIFWNY 354

The following BLAST results are available for this feature:

BLAST of Csa2G070240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP263_ARATH	2.6e-76	69.68	Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN...	[more]
PP310_ARATH	8.6e-11	30.60	Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidop...	[more]

BLAST of Csa2G070240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMJ8_CUCSA	5.5e-105	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070240 PE=4 SV=1	[more]
A0A067K0T9_JATCU	3.4e-83	77.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14439 PE=4 SV=1	[more]
B9RDM7_RICCO	3.8e-82	73.94	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]
A0A151S0P5_CAJCA	6.5e-82	77.13	Pentatricopeptide repeat-containing protein At3g42630 family (Fragment) OS=Cajan...	[more]
U5FGF9_POPTR	3.2e-81	76.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s14360g PE=4 SV=1	[more]

BLAST of Csa2G070240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G42630.1	1.5e-77	69.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G14190.1	4.9e-12	30.60	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G18940.1	6.1e-07	32.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80150.1	6.8e-06	22.01	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Csa2G070240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667690\|ref\|XP_011648974.1\|	7.8e-105	100.00	PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis s...	[more]
gi\|700206087\|gb\|KGN61206.1\|	7.8e-105	100.00	hypothetical protein Csa_2G070240 [Cucumis sativus]	[more]
gi\|659069563\|ref\|XP_008450656.1\|	2.1e-102	98.40	PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis m...	[more]
gi\|802696186\|ref\|XP_012083448.1\|	4.9e-83	77.13	PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jat...	[more]
gi\|802696190\|ref\|XP_012083449.1\|	4.9e-83	77.13	PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X2 [Jat...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU136652	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G070240.1	Csa2G070240.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU136652	CU136652	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..188 score: 8.9
None	No IPR available	PANTHER	PTHR24015:SF649	SUBFAMILY NOT NAMED	coord: 1..188 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G070240	Cla005781	Watermelon (97103) v1	cuwmB163
Csa2G070240	MELO3C003928	Melon (DHL92) v3.5.1	cumeB139
Csa2G070240	ClCG11G011370	Watermelon (Charleston Gray)	cuwcgB103
Csa2G070240	Lsi11G008200	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G070240	MELO3C003928.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G070240	Cla97C11G217430	Watermelon (97103) v2	cuwmbB109
Csa2G070240	Bhi06G001020	Wax gourd	cuwgoB132
Csa2G070240	CSPI02G06700	Wild cucumber (PI 183967)	cpicuB065
Csa2G070240	Cucsa.179000	Cucumber (Gy14) v1	cgycuB274
Csa2G070240	CmaCh12G009330	Cucurbita maxima (Rimu)	cmacuB165
Csa2G070240	CmoCh12G009330	Cucurbita moschata (Rifu)	cmocuB150
Csa2G070240	Cp4.1LG07g07710	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G070240	CsGy2G006870	Cucumber (Gy14) v2	cgybcuB056
Csa2G070240	Carg22674	Silver-seed gourd	carcuB0005

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G070240	Cucurbita maxima (Rimu)	cmacuB786
Csa2G070240	Cucurbita moschata (Rifu)	cmocuB779
Csa2G070240	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G070240	Silver-seed gourd	carcuB0184