CmoCh12G009330 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G009330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCmo_Chr12 : 8672525 .. 8673814 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTCTGTACAATTAGGAGCTTTAAAGTAACAAAACAGAAATAGAGTGATTTATCTACTGATGAACATGTTATAGATATTCACACTTCCCTAATTTTGTTTATTTTATACGCAATGTACTTAGGATAGATACTCCGGCAGAACAAAGAAAAAGGAAGCTTTGCTGGCGATGATTCTTCTATCAACCATTCCCAAGTGATTGAGAAATTGAGCCAAAGAAGAACGCCTGTTTTAGCTCAAGAGATTTTCTTGGAGCTGAAATCTGAAGATTTTCCATTAAACAACTCAACATTGTCTTCTCTTATGGTACGCTACATAGATGGTGGTCTTCTCCTCCAAGCAGAAGCAATTTGGGAAGAAATGTTAAACAGTTGTTTCGTGCCTTCCGTTTTAGTAATTTCAAAGTTACTTAACACGTACGGAAAGATGAGACGCTTCGACGATATAATTAAAGTTCTGGATCAGGTAAAGCTAAGGTATTTACACTTACTGCCTGAAGCATACTCATTAGCCATATCATGTTTTGGGAAGCATGGTCAATTAGAATTGATGGAAAACACTTTGAGGGAAATGGTTTCCAGTGGTGTTCCAGTTGATTCCCGTACAGGAAATTCCTTTATTGCATACTACAGCATTTTTGGTTCTCTGATGGAGATGGAAACCGCCTATGGCCGCCTTAAAAGGTCTCGATTTCTAATTGAGAAGGAAGGCATCCTGGCAATGGCGTTCGCCTACATAAGGGAAAGAAAATTTTACAGATTAGGGGAATTCCTTAGGGATGTTGGTCTTAGAAGGAAAAACGTGGGGAATATGTTATGGAATCTTCTACTTTTATCTTATGCTGCCAATTTCAAAATGAAAAGCTTGCAGCGTGAGTTTCTGGCAATGGTTGAAGCTGGATTTAATCCGGATATTACAACGTTTAATATTAGAGCTATGGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACATATGAAACACGTGAAGATCGAACCCGATCTCGTGACGTACGGTTGTGTTGTTGATGCATATGTAGATAGAAGACTTGGAAGGAATTTGGAATTCGTTTTGAGCAAAATGAATCCAGATCAACCTCCAATATCATTAACAGATCCGTTTGTTTTTGAGGCATTGGGTAAAGGAGATTTCCACATGAGCTCTGAGGCGTTCATGCAGTTCCAGAAGCAGAAGAAATGGACTTACAGAGAGTTGATATCATTGTATCTGAAAAAGCAACACAGGAGAGATCAAGTCTTTTGGAATTACTAG

mRNA sequence

ATGGATCTCTGTACAATTAGGAGCTTTAAAATACTCCGGCAGAACAAAGAAAAAGGAAGCTTTGCTGGCGATGATTCTTCTATCAACCATTCCCAAGTGATTGAGAAATTGAGCCAAAGAAGAACGCCTGTTTTAGCTCAAGAGATTTTCTTGGAGCTGAAATCTGAAGATTTTCCATTAAACAACTCAACATTGTCTTCTCTTATGGTACGCTACATAGATGGTGGTCTTCTCCTCCAAGCAGAAGCAATTTGGGAAGAAATGTTAAACAGTTGTTTCGTGCCTTCCGTTTTAGTAATTTCAAAGTTACTTAACACGTACGGAAAGATGAGACGCTTCGACGATATAATTAAAGTTCTGGATCAGGTAAAGCTAAGGTATTTACACTTACTGCCTGAAGCATACTCATTAGCCATATCATGTTTTGGGAAGCATGGTCAATTAGAATTGATGGAAAACACTTTGAGGGAAATGGTTTCCAGTGGTGTTCCAGTTGATTCCCGTACAGGAAATTCCTTTATTGCATACTACAGCATTTTTGGTTCTCTGATGGAGATGGAAACCGCCTATGGCCGCCTTAAAAGGTCTCGATTTCTAATTGAGAAGGAAGGCATCCTGGCAATGGCGTTCGCCTACATAAGGGAAAGAAAATTTTACAGATTAGGGGAATTCCTTAGGGATGTTGGTCTTAGAAGGAAAAACGTGGGGAATATGTTATGGAATCTTCTACTTTTATCTTATGCTGCCAATTTCAAAATGAAAAGCTTGCAGCGTGAGTTTCTGGCAATGGTTGAAGCTGGATTTAATCCGGATATTACAACGTTTAATATTAGAGCTATGGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACATATGAAACACGTGAAGATCGAACCCGATCTCGTGACGTACGGTTGTGTTGTTGATGCATATGTAGATAGAAGACTTGGAAGGAATTTGGAATTCGTTTTGAGCAAAATGAATCCAGATCAACCTCCAATATCATTAACAGATCCGTTTGTTTTTGAGGCATTGGGTAAAGGAGATTTCCACATGAGCTCTGAGGCGTTCATGCAGTTCCAGAAGCAGAAGAAATGGACTTACAGAGAGTTGATATCATTGTATCTGAAAAAGCAACACAGGAGAGATCAAGTCTTTTGGAATTACTAG

Coding sequence (CDS)

ATGGATCTCTGTACAATTAGGAGCTTTAAAATACTCCGGCAGAACAAAGAAAAAGGAAGCTTTGCTGGCGATGATTCTTCTATCAACCATTCCCAAGTGATTGAGAAATTGAGCCAAAGAAGAACGCCTGTTTTAGCTCAAGAGATTTTCTTGGAGCTGAAATCTGAAGATTTTCCATTAAACAACTCAACATTGTCTTCTCTTATGGTACGCTACATAGATGGTGGTCTTCTCCTCCAAGCAGAAGCAATTTGGGAAGAAATGTTAAACAGTTGTTTCGTGCCTTCCGTTTTAGTAATTTCAAAGTTACTTAACACGTACGGAAAGATGAGACGCTTCGACGATATAATTAAAGTTCTGGATCAGGTAAAGCTAAGGTATTTACACTTACTGCCTGAAGCATACTCATTAGCCATATCATGTTTTGGGAAGCATGGTCAATTAGAATTGATGGAAAACACTTTGAGGGAAATGGTTTCCAGTGGTGTTCCAGTTGATTCCCGTACAGGAAATTCCTTTATTGCATACTACAGCATTTTTGGTTCTCTGATGGAGATGGAAACCGCCTATGGCCGCCTTAAAAGGTCTCGATTTCTAATTGAGAAGGAAGGCATCCTGGCAATGGCGTTCGCCTACATAAGGGAAAGAAAATTTTACAGATTAGGGGAATTCCTTAGGGATGTTGGTCTTAGAAGGAAAAACGTGGGGAATATGTTATGGAATCTTCTACTTTTATCTTATGCTGCCAATTTCAAAATGAAAAGCTTGCAGCGTGAGTTTCTGGCAATGGTTGAAGCTGGATTTAATCCGGATATTACAACGTTTAATATTAGAGCTATGGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACATATGAAACACGTGAAGATCGAACCCGATCTCGTGACGTACGGTTGTGTTGTTGATGCATATGTAGATAGAAGACTTGGAAGGAATTTGGAATTCGTTTTGAGCAAAATGAATCCAGATCAACCTCCAATATCATTAACAGATCCGTTTGTTTTTGAGGCATTGGGTAAAGGAGATTTCCACATGAGCTCTGAGGCGTTCATGCAGTTCCAGAAGCAGAAGAAATGGACTTACAGAGAGTTGATATCATTGTATCTGAAAAAGCAACACAGGAGAGATCAAGTCTTTTGGAATTACTAG
Homology
[Close]
BLAST of CmoCh12G009330 vs. Swiss-Prot
Match: PP263_ARATH (Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2)

HSP 1 Score: 459.5 bits (1181), Expect = 3.6e-128
Identity = 219/386 (56.74%), Postives = 294/386 (76.17%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           K+++++K    F+     ++++ +++ LSQRR P +A EIFL+ KS +   N  TL +LM
Sbjct: 30  KLIKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALM 89

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + + + G +L+A  IW+E++NSCFVP V V+SKL++ Y +   FD++ K+   V  R+  
Sbjct: 90  LCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSK 149

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           LLP   SLAISCFGK+GQLELME  + EM S GV +++ T N  + YYS FGSL +ME A
Sbjct: 150 LLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKA 209

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           YGR+K+   +IE+E I A+  AY+++RKFYRL EFL DVGL R+N+GNMLWN +LLSYAA
Sbjct: 210 YGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWNSVLLSYAA 269

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           +FKMKSLQREF+ M++AGF+PD+TTFNIRA+AFSRM L WDLHL+LEHM+ + I PDLVT
Sbjct: 270 DFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVT 329

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
           +GCVVDAY+D+RL RNLEFV ++MN D  P+ LTDP  FE LGKGDFH+SSEA ++F  +
Sbjct: 330 FGCVVDAYMDKRLARNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVLEFSPR 389

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           K WTYR+LI +YLKK+ RRDQ+FWNY
Sbjct: 390 KNWTYRKLIGVYLKKKLRRDQIFWNY 415

[Close]
BLAST of CmoCh12G009330 vs. Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.8e-14
Identity = 77/351 (21.94%), Postives = 142/351 (40.46%), Query Frame = 1 

Query: 37  LSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPS 96
           +  +R    A+ +F E+       N  T + L+  +   G +  A  ++++M     +P+
Sbjct: 180 IRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPN 239

Query: 97  VLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLHLLPEAYSLAISCFGKHGQLELMENTLR 156
           V+  + L++ Y K+R+ DD  K+L  + L+ L     +Y++ I+   + G+++ +   L 
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query: 157 EMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRER 216
           EM   G  +D  T N+ I  Y   G+  +    +  + R           ++  +  +  
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query: 217 KFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFN 276
              R  EFL  + +R        +  L+  ++    M    R    M + GF+P + T+N
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 277 IRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVTYGCVVDAY-----VDRRLGRNLEFVLS 336
                      + D    LE MK   + PD+V+Y  V+  +     VD  L    E V  
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479

Query: 337 KMNPDQPPI-SLTDPFVFEALGKGDFHMSSEAFMQFQKQKKWTYRELISLY 382
            + PD     SL   F  +   K    +  E         ++TY  LI+ Y
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530

[Close]
BLAST of CmoCh12G009330 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-13
Identity = 69/304 (22.70%), Postives = 121/304 (39.80%), Query Frame = 1 

Query: 52  ELKSEDFPLNNSTLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMR 111
           ++KS+    +  T ++L+     G L  +A  ++EEM  + F    +  + LL+ YGK  
Sbjct: 269 KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSH 328

Query: 112 RFDDIIKVLDQVKLRYLHLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGN 171
           R  + +KVL+++ L         Y+  IS + + G L+       +M   G   D  T  
Sbjct: 329 RPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYT 388

Query: 172 SFIAYYSIFGSLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLR 231
           + ++ +   G +    + +  ++ +          A    Y    KF  + +   ++ + 
Sbjct: 389 TLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC 448

Query: 232 RKNVGNMLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDL 291
             +   + WN LL  +  N     +   F  M  AGF P+  TFN    A+SR       
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508

Query: 292 HLSLEHMKHVKIEPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQ-PPISLTDPFVFEA 351
                 M    + PDL TY  V+ A     +    E VL++M   +  P  LT   +  A
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 352 LGKG 355
              G
Sbjct: 569 YANG 572

[Close]
BLAST of CmoCh12G009330 vs. Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-11
Identity = 60/294 (20.41%), Postives = 126/294 (42.86%), Query Frame = 1 

Query: 76  GLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLHLLPEAY 135
           GLL +   +++EM +     SV   + L+N YG+  R++  +++LD++K   +      Y
Sbjct: 155 GLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTY 214

Query: 136 SLAISCFGKHG-QLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETAYGRLK 195
           +  I+   + G   E +     EM   G+  D  T N+ ++  +I G   E E  +  + 
Sbjct: 215 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN 274

Query: 196 RSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAANFKMK 255
               + +      +   + + R+  ++ + L ++           +N+LL +YA +  +K
Sbjct: 275 DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIK 334

Query: 256 SLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVTYGCVV 315
                F  M  AG  P+  T+++    F +     D+      MK    +PD  TY  ++
Sbjct: 335 EAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILI 394

Query: 316 DAYVDRRLGRNLEFVLSKMNPD--QPPISLTDPFVFEALGKGDFHMSSEAFMQF 367
           + + +    + +  +   M  +  +P +   +  +F A GKG  H  +   +Q+
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF-ACGKGGLHEDARKILQY 447

[Close]
BLAST of CmoCh12G009330 vs. Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-08
Identity = 57/286 (19.93%), Postives = 115/286 (40.21%), Query Frame = 1 

Query: 46  AQEIFLELKSEDFPLNNSTLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLN 105
           A ++  E+       N  T +SL+  +     L +A  + + M++    P ++  + L+N
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411

Query: 106 TYGKMRRFDDIIKVLDQVKLRYLHLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPV 165
            Y K  R DD +++  ++ LR +      Y+  +  F + G+LE+ +   +EMVS  V  
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 166 DSRTGNSFIAYYSIFGSLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFL 225
           D  +    +      G L +    +G++++S+  ++    + +        K     +  
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 226 RDVGLRRKNVGNMLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRM 285
             + L+   +    +N+++        +      F  M E G  PD  T+NI   A    
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591

Query: 286 DLLWDLHLSLEHMKHVKIEPDLVTYGCVVDAYVDRRLGRNLEFVLS 332
           D        +E MK      D+ T   V++      L ++   +LS
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLS 637

[Close]
BLAST of CmoCh12G009330 vs. TrEMBL
Match: M5XQ40_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006191mg PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 8.6e-145
Identity = 254/386 (65.80%), Postives = 319/386 (82.64%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           KI+R+ K++  F G    ++   +I  LS+++ P +AQE+ LE+KS+    +NSTLS+LM
Sbjct: 38  KIIRKWKQEECFDGKGIYVDCVPLIRSLSRQKMPHVAQELVLEMKSDGLLPSNSTLSALM 97

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + + + GL  QAEAIW+EML+S FVPS+ V+S+L + YG +  F+ + ++L Q++ R L 
Sbjct: 98  LCHANNGLFPQAEAIWDEMLHSSFVPSIQVVSELFDAYGNVGCFEKVNEILAQIRSRNLS 157

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           L PE YSLAISCFGK GQLELME TL+EM+S G P+DS TGN+FI YYSIFGSL EMETA
Sbjct: 158 LFPEVYSLAISCFGKGGQLELMEGTLKEMISRGFPLDSATGNAFIRYYSIFGSLTEMETA 217

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           YGRLKRSRFLIE+EGI AM+FAY+++RKFYRL E L++VGL R+N+GN+ WNLLLLSYAA
Sbjct: 218 YGRLKRSRFLIEEEGIRAMSFAYLKKRKFYRLAELLKNVGLGRRNLGNLSWNLLLLSYAA 277

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           +FKMKSLQREFL MVEAGF+PD+TTFNIRA+AFSRM LLWDLHLSLEHMKH K+ PDLVT
Sbjct: 278 DFKMKSLQREFLRMVEAGFHPDLTTFNIRALAFSRMSLLWDLHLSLEHMKHEKVFPDLVT 337

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
            GCVVDAY++RRLG+N+ F L+KMN D  P+ LTDPFVFE LGKGDFH SSEAF++FQ Q
Sbjct: 338 CGCVVDAYLERRLGKNMYFALNKMNLDDSPLILTDPFVFEVLGKGDFHASSEAFLEFQSQ 397

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           ++WTYR LIS+YLKKQ+RR+Q+FWNY
Sbjct: 398 REWTYRRLISVYLKKQYRRNQIFWNY 423

[Close]
BLAST of CmoCh12G009330 vs. TrEMBL
Match: B9N840_POPTR (Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0018s14360g PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 4.3e-144
Identity = 257/387 (66.41%), Postives = 310/387 (80.10%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           K++RQ K      G ++  + + +I+ L + R P LA+E+ LELK E F  +N TLS++M
Sbjct: 42  KMIRQWKRDQGVFGKETCADCASLIQTLCKHRRPHLAEELLLELKCEGFLPDNRTLSAMM 101

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVK-LRYL 129
           + Y D GLL QA+AIWEEML S FVPSV VIS L++ Y K   FD++IK+LDQ+  LR  
Sbjct: 102 LCYADSGLLPQAQAIWEEMLYSSFVPSVQVISDLIDIYAKSGLFDEVIKILDQLSSLRTF 161

Query: 130 HLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMET 189
             LP+ YSLAISCFGK GQLELME+TL++MVS G  VDS TGN+F+ YYS+ GSL EME 
Sbjct: 162 DFLPQVYSLAISCFGKGGQLELMEDTLKKMVSKGFWVDSATGNAFVVYYSLHGSLAEMEA 221

Query: 190 AYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYA 249
           AY RLKRSR LIE+EGI AM+FAYI+ERKFY L EFLRDVGL RKN+GN++WNLLLLSY+
Sbjct: 222 AYDRLKRSRLLIEREGIRAMSFAYIKERKFYGLSEFLRDVGLGRKNLGNLIWNLLLLSYS 281

Query: 250 ANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLV 309
           ANFKMK+LQREFL M+EAGF+PD+TTFNIRA+AFSRM LLWDLHL LEHMKH K+ PDLV
Sbjct: 282 ANFKMKTLQREFLNMLEAGFHPDLTTFNIRALAFSRMSLLWDLHLGLEHMKHDKVAPDLV 341

Query: 310 TYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQK 369
           TYGC+VDAY+DRRL RNLEF LSKM+ D  P+  TDPFVFE  GKGDFH SSEAFM+F++
Sbjct: 342 TYGCIVDAYLDRRLVRNLEFALSKMHVDNSPVLSTDPFVFEVFGKGDFHSSSEAFMEFKR 401

Query: 370 QKKWTYRELISLYLKKQHRRDQVFWNY 396
           Q+KWTYRELI +YL+KQHR   +FWNY
Sbjct: 402 QRKWTYRELIKIYLRKQHRSKHIFWNY 428

[Close]
BLAST of CmoCh12G009330 vs. TrEMBL
Match: D7T0N2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00380 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 4.3e-144
Identity = 249/380 (65.53%), Postives = 312/380 (82.11%), Query Frame = 1 

Query: 16  KEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLMVRYIDG 75
           K++ S  G D+ ++++ +I+ LS++R P +AQE+  E+KSE F  NNSTLS+LM+ Y D 
Sbjct: 44  KQERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSEGFLPNNSTLSALMLCYADN 103

Query: 76  GLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLHLLPEAY 135
           GL  +A+A+W+E++NS F P++ ++SKL++ YGKM  F ++ ++L QV  R  + + E Y
Sbjct: 104 GLFPKAQALWDEIINSSFGPNIQIVSKLIDAYGKMGHFGEVTRILHQVSSRDFNFMHEVY 163

Query: 136 SLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETAYGRLKR 195
           SLAISCFGK GQLE+MEN L+EMVS G PVDS TGN+FI YYSIFGSL EME AY RLK+
Sbjct: 164 SLAISCFGKGGQLEMMENALKEMVSRGFPVDSATGNAFIRYYSIFGSLTEMEAAYDRLKK 223

Query: 196 SRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAANFKMKS 255
           SR LIE+EGI AM+FAYI+E+K+YRLG+FLRDVGL RKNVGN+LWNLLLLSYAANFKMKS
Sbjct: 224 SRILIEEEGIRAMSFAYIKEKKYYRLGQFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKS 283

Query: 256 LQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVTYGCVVD 315
           LQREFL MVEAGF PD+TTFNIRA+AFSRM L WDLHLSLEHM+HVK+  DLVTYGCVVD
Sbjct: 284 LQREFLEMVEAGFAPDLTTFNIRALAFSRMSLFWDLHLSLEHMQHVKVVADLVTYGCVVD 343

Query: 316 AYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQKKWTYR 375
           AY+DRRLG+NL+F L KMN D  P+  TD FVFE LGKGDFH SSEAF++ ++  KWTYR
Sbjct: 344 AYLDRRLGKNLDFALKKMNMDDSPLVSTDHFVFEVLGKGDFHSSSEAFLESKRNGKWTYR 403

Query: 376 ELISLYLKKQHRRDQVFWNY 396
           +LI+ YLKK++R +Q+FWNY
Sbjct: 404 KLIATYLKKKYRSNQIFWNY 423

[Close]
BLAST of CmoCh12G009330 vs. TrEMBL
Match: B9RDM7_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1614490 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 7.3e-144
Identity = 243/386 (62.95%), Postives = 317/386 (82.12%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           KI+ Q K+  SF+  +  ++ + +++ L  +RTP LAQEI LE+KS+ + LNN TLS+++
Sbjct: 44  KIIYQWKQDQSFSCKE--VDCASLVQNLHSKRTPHLAQEILLEMKSQGYVLNNPTLSAIL 103

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + Y D GLL QA+AIW+ MLN  F PS+ ++S+L++ Y K   F++++ +LDQ+      
Sbjct: 104 LCYADNGLLPQAQAIWKHMLNGSFTPSIQIVSRLIDAYSKKGHFNEVMNILDQLSYSNFS 163

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           LL EAYSLAISCFGK GQL+LMEN L++MV  G PVD  TGN+FI YYSI GSL +ME+A
Sbjct: 164 LLHEAYSLAISCFGKGGQLQLMENALKDMVLRGFPVDYATGNAFIRYYSIHGSLTDMESA 223

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           Y RLKRSR L+++EGI A++ AY++ERKFYRLGEFLRDVGL RK+VGN++WN LLLS+AA
Sbjct: 224 YSRLKRSRHLVDREGIRAVSLAYVKERKFYRLGEFLRDVGLGRKDVGNLIWNFLLLSFAA 283

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           NFKMKSLQREFL M+EAGF+PD+TTFNIRA+AFSRM LLWDLHL+LEHMKH K+ PD+VT
Sbjct: 284 NFKMKSLQREFLRMLEAGFHPDVTTFNIRALAFSRMSLLWDLHLTLEHMKHEKVSPDIVT 343

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
           YGC+VDAY+DRRLG+NL+F + KMN D  P+ LTDPFVFE LGKGDFH S+EAF++F++Q
Sbjct: 344 YGCIVDAYLDRRLGKNLDFAIKKMNLDGSPVLLTDPFVFEVLGKGDFHSSAEAFLEFKRQ 403

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           +KWTYREL+S+YL+KQ+R +Q+FWNY
Sbjct: 404 RKWTYRELVSIYLRKQYRSNQIFWNY 427

[Close]
BLAST of CmoCh12G009330 vs. TrEMBL
Match: A0A067K0T9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14439 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 5.8e-141
Identity = 245/386 (63.47%), Postives = 315/386 (81.61%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           KI+ Q K+  S  G +  ++ + +++ L ++R   LA E+ LE+KS+ +  +NSTLS++M
Sbjct: 44  KIIWQWKQGRSVYGKEIFVDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMM 103

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + Y + GLL QA++IWEE+L++ F PS+ ++S+L++ YGK  +F+++ K+LDQ+      
Sbjct: 104 ICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFS 163

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
            L EAYSLAISCFG  GQ++LMENTL+EMVS G  VD  TGN+FI YYSI GSL EME+A
Sbjct: 164 SLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESA 223

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
             RLKRSR LI++EGI AMAFA+IRERKFYRLGEFLRDVGL R++VGN+LWN LLLSYAA
Sbjct: 224 CNRLKRSRHLIDREGIRAMAFAFIRERKFYRLGEFLRDVGLGRRDVGNLLWNFLLLSYAA 283

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           NFKMKSLQREFL M EAGF PD+TTFNIRA+AFSRM L WDLHLSLEHMK+ K+ PDLVT
Sbjct: 284 NFKMKSLQREFLRMSEAGFRPDLTTFNIRALAFSRMSLFWDLHLSLEHMKYEKVSPDLVT 343

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
           YGC VDAY+DRRLG+NL+FVL+KMN D+ P+  TDPFVFE LGKGDFH S+EAF++F+++
Sbjct: 344 YGCFVDAYLDRRLGKNLDFVLNKMNLDESPVVSTDPFVFEVLGKGDFHSSAEAFLEFKRK 403

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           KKWTY+EL+SLYL+KQ+R +Q+FWNY
Sbjct: 404 KKWTYKELVSLYLRKQYRSNQIFWNY 429

[Close]
BLAST of CmoCh12G009330 vs. TAIR10
Match: AT3G42630.1 (AT3G42630.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 459.5 bits (1181), Expect = 2.0e-129
Identity = 219/386 (56.74%), Postives = 294/386 (76.17%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           K+++++K    F+     ++++ +++ LSQRR P +A EIFL+ KS +   N  TL +LM
Sbjct: 30  KLIKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALM 89

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + + + G +L+A  IW+E++NSCFVP V V+SKL++ Y +   FD++ K+   V  R+  
Sbjct: 90  LCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSK 149

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           LLP   SLAISCFGK+GQLELME  + EM S GV +++ T N  + YYS FGSL +ME A
Sbjct: 150 LLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKA 209

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           YGR+K+   +IE+E I A+  AY+++RKFYRL EFL DVGL R+N+GNMLWN +LLSYAA
Sbjct: 210 YGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWNSVLLSYAA 269

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           +FKMKSLQREF+ M++AGF+PD+TTFNIRA+AFSRM L WDLHL+LEHM+ + I PDLVT
Sbjct: 270 DFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLVT 329

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
           +GCVVDAY+D+RL RNLEFV ++MN D  P+ LTDP  FE LGKGDFH+SSEA ++F  +
Sbjct: 330 FGCVVDAYMDKRLARNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVLEFSPR 389

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           K WTYR+LI +YLKK+ RRDQ+FWNY
Sbjct: 390 KNWTYRKLIGVYLKKKLRRDQIFWNY 415

[Close]
BLAST of CmoCh12G009330 vs. TAIR10
Match: AT5G39710.1 (AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 4.4e-15
Identity = 77/351 (21.94%), Postives = 142/351 (40.46%), Query Frame = 1 

Query: 37  LSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPS 96
           +  +R    A+ +F E+       N  T + L+  +   G +  A  ++++M     +P+
Sbjct: 180 IRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPN 239

Query: 97  VLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLHLLPEAYSLAISCFGKHGQLELMENTLR 156
           V+  + L++ Y K+R+ DD  K+L  + L+ L     +Y++ I+   + G+++ +   L 
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query: 157 EMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRER 216
           EM   G  +D  T N+ I  Y   G+  +    +  + R           ++  +  +  
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query: 217 KFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFN 276
              R  EFL  + +R        +  L+  ++    M    R    M + GF+P + T+N
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 277 IRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVTYGCVVDAY-----VDRRLGRNLEFVLS 336
                      + D    LE MK   + PD+V+Y  V+  +     VD  L    E V  
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479

Query: 337 KMNPDQPPI-SLTDPFVFEALGKGDFHMSSEAFMQFQKQKKWTYRELISLY 382
            + PD     SL   F  +   K    +  E         ++TY  LI+ Y
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530

[Close]
BLAST of CmoCh12G009330 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14
Identity = 69/304 (22.70%), Postives = 121/304 (39.80%), Query Frame = 1 

Query: 52  ELKSEDFPLNNSTLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMR 111
           ++KS+    +  T ++L+     G L  +A  ++EEM  + F    +  + LL+ YGK  
Sbjct: 269 KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSH 328

Query: 112 RFDDIIKVLDQVKLRYLHLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGN 171
           R  + +KVL+++ L         Y+  IS + + G L+       +M   G   D  T  
Sbjct: 329 RPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYT 388

Query: 172 SFIAYYSIFGSLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLR 231
           + ++ +   G +    + +  ++ +          A    Y    KF  + +   ++ + 
Sbjct: 389 TLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC 448

Query: 232 RKNVGNMLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDL 291
             +   + WN LL  +  N     +   F  M  AGF P+  TFN    A+SR       
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508

Query: 292 HLSLEHMKHVKIEPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQ-PPISLTDPFVFEA 351
                 M    + PDL TY  V+ A     +    E VL++M   +  P  LT   +  A
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 352 LGKG 355
              G
Sbjct: 569 YANG 572

[Close]
BLAST of CmoCh12G009330 vs. TAIR10
Match: AT1G74850.1 (AT1G74850.1 plastid transcriptionally active 2)

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-12
Identity = 60/294 (20.41%), Postives = 126/294 (42.86%), Query Frame = 1 

Query: 76  GLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLHLLPEAY 135
           GLL +   +++EM +     SV   + L+N YG+  R++  +++LD++K   +      Y
Sbjct: 155 GLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTY 214

Query: 136 SLAISCFGKHG-QLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETAYGRLK 195
           +  I+   + G   E +     EM   G+  D  T N+ ++  +I G   E E  +  + 
Sbjct: 215 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN 274

Query: 196 RSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAANFKMK 255
               + +      +   + + R+  ++ + L ++           +N+LL +YA +  +K
Sbjct: 275 DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIK 334

Query: 256 SLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVTYGCVV 315
                F  M  AG  P+  T+++    F +     D+      MK    +PD  TY  ++
Sbjct: 335 EAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILI 394

Query: 316 DAYVDRRLGRNLEFVLSKMNPD--QPPISLTDPFVFEALGKGDFHMSSEAFMQF 367
           + + +    + +  +   M  +  +P +   +  +F A GKG  H  +   +Q+
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF-ACGKGGLHEDARKILQY 447

[Close]
BLAST of CmoCh12G009330 vs. TAIR10
Match: AT1G12775.1 (AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-09
Identity = 57/286 (19.93%), Postives = 115/286 (40.21%), Query Frame = 1 

Query: 46  AQEIFLELKSEDFPLNNSTLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLN 105
           A ++  E+       N  T +SL+  +     L +A  + + M++    P ++  + L+N
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411

Query: 106 TYGKMRRFDDIIKVLDQVKLRYLHLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPV 165
            Y K  R DD +++  ++ LR +      Y+  +  F + G+LE+ +   +EMVS  V  
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 166 DSRTGNSFIAYYSIFGSLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFL 225
           D  +    +      G L +    +G++++S+  ++    + +        K     +  
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 226 RDVGLRRKNVGNMLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRM 285
             + L+   +    +N+++        +      F  M E G  PD  T+NI   A    
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591

Query: 286 DLLWDLHLSLEHMKHVKIEPDLVTYGCVVDAYVDRRLGRNLEFVLS 332
           D        +E MK      D+ T   V++      L ++   +LS
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLS 637

[Close]
BLAST of CmoCh12G009330 vs. NCBI nr
Match: gi|778667690|ref|XP_011648974.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis sativus])

HSP 1 Score: 654.4 bits (1687), Expect = 1.2e-184
Identity = 327/392 (83.42%), Postives = 355/392 (90.56%), Query Frame = 1 

Query: 4   CTIRSFKILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNS 63
           C   S KI +Q+ E GS   D  +IN+SQVI+KLS+RR P+LA+EIFLELKSE FPLNNS
Sbjct: 33  CRASSCKIFQQHNE-GSSVDDSFNINNSQVIKKLSRRRMPILAKEIFLELKSEGFPLNNS 92

Query: 64  TLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQV 123
           TLS++MV YID G  LQA+A+WEEMLNSCF PSV VISKL N YGKM  FD I KVLDQV
Sbjct: 93  TLSTIMVHYIDDGSPLQAQAMWEEMLNSCFEPSVQVISKLFNAYGKMGHFDYITKVLDQV 152

Query: 124 KLRYLHLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSL 183
           KLRY HLLPEAYSLAISCFGKH QLELME+TLREMVSSG  V+S TGNSFI YYS+FGSL
Sbjct: 153 KLRYSHLLPEAYSLAISCFGKHKQLELMESTLREMVSSGFTVNSATGNSFIIYYSMFGSL 212

Query: 184 MEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLL 243
           +EMETAYGRLKRSRFLIEK+GI+AMAFAYIR+RKFYRLGEFLRDVGL RKNVGN+LWNLL
Sbjct: 213 VEMETAYGRLKRSRFLIEKKGIMAMAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLL 272

Query: 244 LLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKI 303
           LLSYAANFKMKSLQREFL MV+AGFNPD+TTFNIRA+AFSRMDLLWDLHLSLEHMKH+ I
Sbjct: 273 LLSYAANFKMKSLQREFLQMVDAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNI 332

Query: 304 EPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAF 363
           EPDLVTYGCVVDAYVDRRLGRNLEF+LSKMNPDQPP+SLTD FVFEALGKGDFHMSSEAF
Sbjct: 333 EPDLVTYGCVVDAYVDRRLGRNLEFILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAF 392

Query: 364 MQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 396
           MQF+KQKKWTYRELISLYLKK HRR+QVFWNY
Sbjct: 393 MQFRKQKKWTYRELISLYLKKHHRRNQVFWNY 423

[Close]
BLAST of CmoCh12G009330 vs. NCBI nr
Match: gi|659069563|ref|XP_008450656.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis melo])

HSP 1 Score: 649.4 bits (1674), Expect = 3.9e-183
Identity = 327/392 (83.42%), Postives = 353/392 (90.05%), Query Frame = 1 

Query: 4   CTIRSFKILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNS 63
           C   S KI +Q+ E GS      +IN+SQVI+KLS+RR P LA+EIFLELKSE FPLNNS
Sbjct: 35  CRASSCKIFQQHNE-GSSVDYGFNINNSQVIKKLSRRRMPTLAKEIFLELKSEGFPLNNS 94

Query: 64  TLSSLMVRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQV 123
           TLS++MV YID G  LQA+A+WEEMLNSCF PSV VISKL N YGKM  FD I KVLDQV
Sbjct: 95  TLSTIMVHYIDDGSPLQAQAMWEEMLNSCFEPSVQVISKLFNAYGKMGHFDYITKVLDQV 154

Query: 124 KLRYLHLLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSL 183
           KLRY HLLPEAYSLAISCFGKH QLELME+TLREMVSSG  V+S TGNSFI YYS+FGSL
Sbjct: 155 KLRYSHLLPEAYSLAISCFGKHKQLELMESTLREMVSSGFTVNSATGNSFIIYYSMFGSL 214

Query: 184 MEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLL 243
           +EMETAYGRLKRSRFLIEK+GI+AMAFAYIR+RKFYRLGEFLRDVGL RKNVGN+LWNLL
Sbjct: 215 LEMETAYGRLKRSRFLIEKKGIMAMAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLL 274

Query: 244 LLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKI 303
           LLSYAANFKMKSLQREFL MVEAGFNPD+TTFNIRA+AFSRMDLLWDLHLSLEHMKH+ I
Sbjct: 275 LLSYAANFKMKSLQREFLQMVEAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNI 334

Query: 304 EPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAF 363
           EPDLVTYGCVVDAYVDRRLGRNLEF+LSKMNP QPP+SLTD FVFEALGKGDFHMSSEAF
Sbjct: 335 EPDLVTYGCVVDAYVDRRLGRNLEFILSKMNPVQPPVSLTDSFVFEALGKGDFHMSSEAF 394

Query: 364 MQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 396
           MQF+KQKKWTYRELISLYLKKQHRR+QVFWNY
Sbjct: 395 MQFRKQKKWTYRELISLYLKKQHRRNQVFWNY 425

[Close]
BLAST of CmoCh12G009330 vs. NCBI nr
Match: gi|694366993|ref|XP_009362024.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 526.6 bits (1355), Expect = 3.9e-146
Identity = 256/386 (66.32%), Postives = 314/386 (81.35%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           KI+R+ K    F G  + ++  ++I  LS++R P +AQE+ LE+KS+    +NSTLS+LM
Sbjct: 25  KIIRKWKRDECFNGQATYVDCVRIIRSLSEQRLPHVAQELLLEMKSDGLLPSNSTLSALM 84

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + + + GL  QAEA+W EML S FVPS+ V+S+L + YG    F+ + ++L Q++ RYL 
Sbjct: 85  LCHANNGLFPQAEAVWNEMLYSSFVPSIQVVSQLFDVYGNAGCFEKVNEILGQIRARYLS 144

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           L PE Y LAISCFGK GQLELME  L+EM+S G PVDS TGN+FI YYSIFGSL EMETA
Sbjct: 145 LFPEVYLLAISCFGKGGQLELMEGALKEMISMGFPVDSATGNAFIRYYSIFGSLTEMETA 204

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           YGRLKRSRFLIE+EGI AM+FAY++  KFY L EFL+DVGL R+N+GN+LWNLLLLSYAA
Sbjct: 205 YGRLKRSRFLIEEEGIRAMSFAYLKRSKFYELAEFLKDVGLGRRNLGNLLWNLLLLSYAA 264

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           NFKMKSLQREFL MVEAGF+PD+TTFNIRA+ FS+M LLWDLHLSLEHMKH K+ PDLVT
Sbjct: 265 NFKMKSLQREFLRMVEAGFHPDLTTFNIRALTFSKMSLLWDLHLSLEHMKHEKVVPDLVT 324

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
            GCVVDAY+DRRLGRNL F L+KMN D  P+ LTDPFVFE LGKGDFH SSEAF++FQ+Q
Sbjct: 325 CGCVVDAYLDRRLGRNLYFALNKMNLDDSPLVLTDPFVFEVLGKGDFHASSEAFLEFQRQ 384

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           ++WTYR+LIS+YLKK +RR+Q+FWNY
Sbjct: 385 REWTYRKLISVYLKKTYRRNQIFWNY 410

[Close]
BLAST of CmoCh12G009330 vs. NCBI nr
Match: gi|694366990|ref|XP_009362023.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 526.6 bits (1355), Expect = 3.9e-146
Identity = 256/386 (66.32%), Postives = 314/386 (81.35%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           KI+R+ K    F G  + ++  ++I  LS++R P +AQE+ LE+KS+    +NSTLS+LM
Sbjct: 27  KIIRKWKRDECFNGQATYVDCVRIIRSLSEQRLPHVAQELLLEMKSDGLLPSNSTLSALM 86

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + + + GL  QAEA+W EML S FVPS+ V+S+L + YG    F+ + ++L Q++ RYL 
Sbjct: 87  LCHANNGLFPQAEAVWNEMLYSSFVPSIQVVSQLFDVYGNAGCFEKVNEILGQIRARYLS 146

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           L PE Y LAISCFGK GQLELME  L+EM+S G PVDS TGN+FI YYSIFGSL EMETA
Sbjct: 147 LFPEVYLLAISCFGKGGQLELMEGALKEMISMGFPVDSATGNAFIRYYSIFGSLTEMETA 206

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           YGRLKRSRFLIE+EGI AM+FAY++  KFY L EFL+DVGL R+N+GN+LWNLLLLSYAA
Sbjct: 207 YGRLKRSRFLIEEEGIRAMSFAYLKRSKFYELAEFLKDVGLGRRNLGNLLWNLLLLSYAA 266

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           NFKMKSLQREFL MVEAGF+PD+TTFNIRA+ FS+M LLWDLHLSLEHMKH K+ PDLVT
Sbjct: 267 NFKMKSLQREFLRMVEAGFHPDLTTFNIRALTFSKMSLLWDLHLSLEHMKHEKVVPDLVT 326

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
            GCVVDAY+DRRLGRNL F L+KMN D  P+ LTDPFVFE LGKGDFH SSEAF++FQ+Q
Sbjct: 327 CGCVVDAYLDRRLGRNLYFALNKMNLDDSPLVLTDPFVFEVLGKGDFHASSEAFLEFQRQ 386

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           ++WTYR+LIS+YLKK +RR+Q+FWNY
Sbjct: 387 REWTYRKLISVYLKKTYRRNQIFWNY 412

[Close]
BLAST of CmoCh12G009330 vs. NCBI nr
Match: gi|470131016|ref|XP_004301396.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g42630 [Fragaria vesca subsp. vesca])

HSP 1 Score: 525.8 bits (1353), Expect = 6.6e-146
Identity = 257/386 (66.58%), Postives = 318/386 (82.38%), Query Frame = 1 

Query: 10  KILRQNKEKGSFAGDDSSINHSQVIEKLSQRRTPVLAQEIFLELKSEDFPLNNSTLSSLM 69
           KI+R  K++    G D  ++   +I+ LS+++ P +AQE+ L +KSE    +NSTLS++M
Sbjct: 39  KIVRTWKQEECSRGKDCYVDCVPLIQSLSRQKMPHVAQEVLLVMKSEGLIPSNSTLSAVM 98

Query: 70  VRYIDGGLLLQAEAIWEEMLNSCFVPSVLVISKLLNTYGKMRRFDDIIKVLDQVKLRYLH 129
           + +   GLL QAEAIW+EMLNS FVP + V+S+L + YG +  F  + +++ Q++ R L 
Sbjct: 99  LCHAKNGLLPQAEAIWDEMLNSSFVPGIQVVSELFDVYGNVGSFGKVNEIVGQIRSRNLS 158

Query: 130 LLPEAYSLAISCFGKHGQLELMENTLREMVSSGVPVDSRTGNSFIAYYSIFGSLMEMETA 189
           LLP+ YSLAISCFGK GQLELME+TL+EMVS G PVDS TGN FI YYSIFGSL EMETA
Sbjct: 159 LLPQVYSLAISCFGKGGQLELMEDTLKEMVSRGFPVDSATGNVFIRYYSIFGSLTEMETA 218

Query: 190 YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWNLLLLSYAA 249
           Y RLKRSRFLIE+EGI AM+ AY+++RKFY L EFL+ VGL R+N+GN+LWNLLLLSYAA
Sbjct: 219 YDRLKRSRFLIEEEGIRAMSLAYLKKRKFYSLAEFLKSVGLGRRNLGNLLWNLLLLSYAA 278

Query: 250 NFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHVKIEPDLVT 309
           NFKMK+LQREFL MVEAGF+PD+TTFNIRA+AFSRM LLWDLHL+LEHMKHVK+ PDLVT
Sbjct: 279 NFKMKTLQREFLRMVEAGFHPDLTTFNIRALAFSRMSLLWDLHLTLEHMKHVKVVPDLVT 338

Query: 310 YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQ 369
            GC+VDAY+DRRLGRNL F L+KMN D  P+ LTDPFVFE LGKGDFH SSEAF++F+KQ
Sbjct: 339 CGCIVDAYLDRRLGRNLYFALNKMNLDDSPVVLTDPFVFEVLGKGDFHASSEAFLEFRKQ 398

Query: 370 KKWTYRELISLYLKKQHRRDQVFWNY 396
           K+WTY++LIS+YLKKQ+RRDQ+FWNY
Sbjct: 399 KEWTYQKLISVYLKKQYRRDQIFWNY 424

The following BLAST results are available for this feature:
BLAST of CmoCh12G009330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP263_ARATH3.6e-12856.74Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN... [more]
PP407_ARATH7.8e-1421.94Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN... [more]
PP362_ARATH5.1e-1322.70Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
PP124_ARATH8.1e-1120.41Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop... [more]
PPR39_ARATH2.9e-0819.93Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh12G009330 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XQ40_PRUPE8.6e-14565.80Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006191mg PE=4 SV=1[more]
B9N840_POPTR4.3e-14466.41Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POP... [more]
D7T0N2_VITVI4.3e-14465.53Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00380 PE=4 SV=... [more]
B9RDM7_RICCO7.3e-14462.95Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A067K0T9_JATCU5.8e-14163.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14439 PE=4 SV=1[more]
BLAST of CmoCh12G009330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G42630.12.0e-12956.74 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G39710.14.4e-1521.94 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G02860.12.9e-1422.70 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G74850.14.6e-1220.41 plastid transcriptionally active 2[more]
AT1G12775.11.6e-0919.93 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmoCh12G009330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778667690|ref|XP_011648974.1|1.2e-18483.42PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis s... [more]
gi|659069563|ref|XP_008450656.1|3.9e-18383.42PREDICTED: pentatricopeptide repeat-containing protein At3g42630-like [Cucumis m... [more]
gi|694366993|ref|XP_009362024.1|3.9e-14666.32PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X2 [Pyr... [more]
gi|694366990|ref|XP_009362023.1|3.9e-14666.32PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Pyr... [more]
gi|470131016|ref|XP_004301396.1|6.6e-14666.58PREDICTED: pentatricopeptide repeat-containing protein At3g42630 [Fragaria vesca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G009330.1CmoCh12G009330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 134..163
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 263..320
score: 0.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 134..166
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 306..340
score: 5.382coord: 61..95
score: 8.407coord: 131..165
score: 8.681coord: 166..200
score: 5.612coord: 96..130
score: 6.369coord: 271..305
score: 6.04coord: 26..60
score: 5.7coord: 236..270
score: 6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 132..395
score: 3.5E-183coord: 10..116
score: 3.5E
NoneNo IPR availablePANTHERPTHR24015:SF649SUBFAMILY NOT NAMEDcoord: 10..116
score: 3.5E-183coord: 132..395
score: 3.5E