Csa2G013250 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G013250
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Superoxide dismutase [Cu-Zn]; contains IPR001424 (Superoxide dismutase, copper/zinc binding domain), IPR024134 (Superoxide dismutase (Cu/Zn) / chaperones)
Location	Chr2 : 2291366 .. 2295096 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATGACCATTTTCATCATTCCTTGGCTTTTTGTATATTCGGCCATCAGCCATGCCTTCAAAATTTCGCTCCATTCCCATTGTTCTCTTCCTCTTCTCTTTCAAGCTGACCCTTTAGGTAAATGGTTCTCTCCCATTTCATCTCTAATTCCTCTGTTTCTCTTTTATTTTACTTGTTCTTTTTCAGCCATGTCCTCCATTTCTGTGGTGAAACTGAATTGTTCTTATCGATTTCTTGTTTAATTTCTGTTTTTCTCTTTGCGTGTTTTATTTATTTATTTTCGCTCGTTGAAGTTTAAAGATACCAAAAGTTGCGCTTCACTACTTTCCAATTTCGATGGTAGCTGCAAGGTGTAACTCTTACGCTCTTGGTTTTTTGAGTTTAATTTTTTTTGCTTCTTGTTGTTTACTGTTTAGCAAAAAGTATGGTGAGTACTAACAGAAAGTCCCAAACTTAATAGATAGATGATCATGTTCTAAGGAGCGCGATACTTTTGTTTGGCTAGCTTGTTCTTAGCTGATATGTGTCAGACACTCTGAGTTTTTTTGTTAAACGCTCATAGAACACTTTGTTGTATAGACCAAAAAATATTTGTATGATAATAATAATAATAACTTTGAAGTGTAAAATATATCCAGCTGAGTTTTTTTTAAGCATACAAGTGCATTAACTCATTTCCTCTAGATTTTAATTTATATATTTTGAAAATCGTATTGATTGGAACTCCTAGTTTTAACTGACTAAGTGTGAACTTATTTAAGGACATTGAAGGTTAGCATTGATCTTCTCTCTCAAATTTGGCGACGAGGAATTAGTTTTTGTGTCATTCATGTAGTTCCATTTTGCTTTTGAGCATTTGAATTGTTTGTTAACTATTGCTTTGATCAATATATTCGAAAGTGAAATTTCCTTAGTTTATTTTATTGATCAGTATCCAATTTTACCAGTTATTTCAGTTCTCCTAATAACCTTCATTGGATTTGAGTTCAGTTAACACAAAACAATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAAGCATCTTCTTTAGCCAAAATGGCAATGGTAGCTCAAATTAGTGTTCGAATTTAAATGCTTACTCATTTTATGTTTTCTTTTATGTGGTTTTCAGTTTTTCCCTTGTATTATTCAGGTCCAACTATAATTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTTATCAACTGGTACATTCTCATGAGTTGCGCCATCTTAGTTTCTCAATGTTAGATACAAAGTGTCTTTTAGGACATTATAACTCCACTTGCAAACAATTGGTTGCGCAGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCAGATGATGAGAATCGTCACGTTGGTGATCTTGGAAATGTGGTTGCTGGTGATGATGGTATGTTTAATGCTATTCCATATTGCTTTTCATTTTCTCCTTGAAGTAAATTTTAGGAAAACTATGTTTTTACTTTGCGAGTTCTCAGATTATGTTTTTTTTATTCTTCAATTTTCAAAACGTACATTTTTATTCCTTGAGTTTTTTTTAGAATAGATGTATTTGGTCACGAGTAAATCTTTAAATATATTTTTCATTATTATTTTATATTACTTCTATCACATTGACATAGAAAAATAACTTTCTTAAAATTTATTTTTCTAATTTAAAATAATGATAAGAAATTTATGTCGGACCTTTTGAACTTTAAAAACTCGAAAACTAAGAAAAGTACATGTAAAAAATTTAGAGATCAAATTTACATGTCCTAAAAGATTTGGAGACTAAAAACAGTATATCTCGAAAACTATGAAACTAAACGCACACATAATTTAAAACTCAAGGTAATTTTGTCTAAATTTTAATGAGCCTAAATTCAATCCCTCCAAAATGCAGGACACTGGATTCCTTGAAGGCATCCAGCTTCCCTCTCCACCCTCCTAGCAATGACAATATTTCAATAAATATCACTTAATTTGACATGATTGTAAATGTTGTTACGTTTACCGTACAGGTACTGCTACTTTCTCAATTATTGACAAACAGGTTTGGACAATTTTATGTTTAGTTTGATATTTCACCATCTCTACTGGAAGTCTCAACTAGTGAGCATTACTTCTTTCTATGTTATGCAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTAATGTTATAAATCTTCATTGCTATATTTCTAATAGGAATTCTACACATTTAACTCTATCGAAACTTTATCGTGCAAACATTTTAATGATTGACCTGAAGAAATTAACCTCAATTGCATTAATTGTAACTATGCTCCACTTTCGCCTTGGTATTAATTTAATCTTCTTTGAATTCAGTGATATCCTTTTGGGGTTCTTCCCATTTTCTCTCCATACGTGCAGAACATCCATATTCTTCACATTTGTATAATTCAGTTTATTCAAATCTTAAACCAATAGATCATTTTACGTGCTGGAAGTATCAATCTTTGGAATATTTGTTTCCCTTCAATTTCTTGTAAACCTCCCGATGTGTTCAAAAATACCTCAAAGGAATCTTTTTTATCACAGAATGCAGAATGGTTAAAAGAAACTGTAACCAGCAGCCATTTATATAGGCTGAGATAAACAACCTAGGGAAAAAAGGGCTCTCGATAAAAACAAAACAAACTAACAGCTACCAAATAAAGCTGTAAAAATACAACTAAGAAGGGTAAAATCTAAGAACAAAGAATTATCTAACTTAAACAAGAAACATCCCCAAGAAAGAACAAGAAACTAGGAACAAACTAATAACAATAGCCCTAATGACCTCCTTTTGTCTCTGCCTGTCAAGTGGATGACATTCCATTAAATTCAGGATAACCAAATAAAGAAATCTGAAGCATAATCTGACCTTGTCTGCAGGTGGAACTGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGCTGTGGTAAGTTACATAATCATACTAATTCTTCACATTCACATTGCTTCTAAGGATTATGCTATGCCATCCAAACGGTTAAAAAAAACAAAAACAAAAAAGCATACTTGTTCAAACCGTACATTTCTTTTTTCGATAGTAGGTTTGAGATTTGATAGAACCAAGTTCATGTTAGTTAAATTATTGAACGTGGAATTATCGTTAGGTGTATGTCTTTTAGTTAATTTACCAAGGTTTTAAATTTTACTCTCGCAACAAATGTACAGTTCTAAATAACAGTCATATATGTATAATGACGTTATGTGATAAATTGTACTGGTACTTTATACATATACACACTTCTCTGGTTTTATTGCTATAATTTACATCAATTCTTTAACTTGCACAAATAGATTTAACACCTTGAATGTATTGATTGGGACTTCTTTTATTTTCTTGGGATTAATCTGTTCTCTAAAAGAGGTAGCTAAACTTTTTCCTTGACGTAAACATCTGTTATTATATATTTGTTGCAGGCGTTATTGGGCTGCAAGAGTGAAAAACACTTTGGTTTGGATGGTCTGTGATGATTGATGAAGTATAATGTATAAAATGCTTCACTTTGGTTTGGAACATATGTATTGTATCTAAAATAAGATGGCTTCAAGCCCTATAGCAGAAATAAATAAAATTAGAATGAA

mRNA sequence

ATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAAGCATCTTCTTTAGCCAAAATGGCAATGGTCCAACTATAATTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTTATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCAGATGATGAGAATCGTCACGTTGGTGATCTTGGAAATGTGGTTGCTGGTGATGATGGTACTGCTACTTTCTCAATTATTGACAAACAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTGGAACTGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGCTGTGGCGTTATTGGGCTGCAAGAGTGA

Coding sequence (CDS)

ATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAAGCATCTTCTTTAGCCAAAATGGCAATGGTCCAACTATAATTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTTATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCAGATGATGAGAATCGTCACGTTGGTGATCTTGGAAATGTGGTTGCTGGTGATGATGGTACTGCTACTTTCTCAATTATTGACAAACAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTGGAACTGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGCTGTGGCGTTATTGGGCTGCAAGAGTGA

Protein sequence

MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTGPHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGGTELSLTTGNAGERIGCGVIGLQE*

Homology

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BLAST of Csa2G013250 vs. Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.4e-66
Identity = 113/151 (74.83%), Postives = 130/151 (86.09%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAV VL S++GVSG++ F+Q G+GPT +TGN+SGL+ GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLGRGG ELS  TGNAG R+ CGVIGLQ
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACGVIGLQ 151

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BLAST of Csa2G013250 vs. Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 251.9 bits (642), Expect = 4.4e-66
Identity = 113/151 (74.83%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL S++GVSG+IFFSQ G+GPT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NSV+GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

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BLAST of Csa2G013250 vs. Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-65
Identity = 110/151 (72.85%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           M KAV VL S++GVSG+++F+Q G+GPT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PH+NP GK+HGAP+D+ RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           +PDDLGRGG ELS TTGNAG R+ CG+IGLQ
Sbjct: 121 EPDDLGRGGHELSKTTGNAGGRVACGIIGLQ 151

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BLAST of Csa2G013250 vs. Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-65
Identity = 110/151 (72.85%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL S++GVSG+IFF+Q+G+ PT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PH+NP GK+HGAP+DE RH GDLGN+  G+DGTA+F++ DKQI L GP S++GR++VVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS TTGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

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BLAST of Csa2G013250 vs. Swiss-Prot
Match: ALL5B_OLEEU (Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-65
Identity = 108/151 (71.52%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAV VL S++GV+G+++F+Q G+GPT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVTVLNSSEGVTGTVYFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP DENRH GDLGN+  G+DGTA  +I+DKQI L GP+S++GR++VVH+
Sbjct: 61  PHFNPVGKEHGAPGDENRHAGDLGNITVGEDGTAAINIVDKQIPLTGPHSIIGRAVVVHS 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLGRGG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGRGGHELSKSTGNAGGRVACGIIGLQ 151

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BLAST of Csa2G013250 vs. TrEMBL
Match: A0A0A0LIH2_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_2G013250 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.1e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

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BLAST of Csa2G013250 vs. TrEMBL
Match: A0A0D2U2R5_GOSRA (Superoxide dismutase [Cu-Zn] OS=Gossypium raimondii GN=B456_013G192900 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.7e-67
Identity = 118/151 (78.15%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL SN+GVSG++FFSQ G+GPT +TGN+SGLKAGLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLSSNEGVSGTVFFSQEGDGPTTVTGNLSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Csa2G013250 vs. TrEMBL
Match: D2D329_GOSHI (Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.8e-66
Identity = 117/151 (77.48%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL SN+GVSG++FFSQ G+GPT +TGN+SGLKAGLHGFHVHALGD TNGC+STG
Sbjct: 1   MVKAVAVLSSNEGVSGTVFFSQEGDGPTTVTGNLSGLKAGLHGFHVHALGDITNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

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BLAST of Csa2G013250 vs. TrEMBL
Match: A9PAB4_POPTR (Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=POPTR_0005s04590g PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.8e-66
Identity = 117/151 (77.48%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL S++GVSG+IFF+Q G+GPT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLNSSEGVSGTIFFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDGTATF+IIDKQI L GP+S++GR++VVH 
Sbjct: 61  PHFNPVGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIIDKQIPLTGPHSIIGRAVVVHG 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS TTGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Csa2G013250 vs. TrEMBL
Match: A0A0B0N3U9_GOSAR (Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum GN=F383_34570 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.4e-66
Identity = 117/151 (77.48%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL SN+GVSG++FFSQ G+GPT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLGSNEGVSGTVFFSQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

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BLAST of Csa2G013250 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 245.0 bits (624), Expect = 3.1e-65
Identity = 109/151 (72.19%), Postives = 128/151 (84.77%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           M K VAVL S++GV+G+IFF+Q G+G T ++G +SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELSL TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]

BLAST of Csa2G013250 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-50
Identity = 88/150 (58.67%), Postives = 112/150 (74.67%), Query Frame = 1


Query: 2   VKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTGP 61
           ++AVA++  +  V G + F Q+ +G T +TG ISGL  G HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           PDDLG+GG +LS +TGNAG R+GCG+IGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]

BLAST of Csa2G013250 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 91/148 (61.49%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 3   KAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTGPH 62
           KAVAVL+    V G +  +Q+ +GPT +   I+GL  G HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADP 122
           FNP    HGAP+DE RH GDLGN+ A  DG A  +I+D QI L GPNSV+GR+ VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGRGGTELSLTTGNAGERIGCGVIGL 151
           DDLG+GG ELSLTTGNAG R+ CGVIGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]

BLAST of Csa2G013250 vs. NCBI nr
Match: gi|449442877|ref|XP_004139207.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 312.4 bits (799), Expect = 4.4e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of Csa2G013250 vs. NCBI nr
Match: gi|659070538|ref|XP_008455574.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVLESNQGVSG+IFFSQNGNGPT ITGNISGLKAGLHGFHVHALGDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNVVAGD+GTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of Csa2G013250 vs. NCBI nr
Match: gi|823263606|ref|XP_012464569.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 262.3 bits (669), Expect = 5.3e-67
Identity = 118/151 (78.15%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL SN+GVSG++FFSQ G+GPT +TGN+SGLKAGLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLSSNEGVSGTVFFSQEGDGPTTVTGNLSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Csa2G013250 vs. NCBI nr
Match: gi|211906512|gb|ACJ11749.1| (copper/zinc superoxide dismutase [Gossypium hirsutum])

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 117/151 (77.48%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL SN+GVSG++FFSQ G+GPT +TGN+SGLKAGLHGFHVHALGD TNGC+STG
Sbjct: 1   MVKAVAVLSSNEGVSGTVFFSQEGDGPTTVTGNLSGLKAGLHGFHVHALGDITNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Csa2G013250 vs. NCBI nr
Match: gi|566169463|ref|XP_006382702.1| (Cu/Zn superoxide dismutase family protein [Populus trichocarpa])

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 117/151 (77.48%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVL S++GVSG+IFF+Q G+GPT +TGN+SGLK GLHGFHVHALGDTTNGC+STG
Sbjct: 1   MVKAVAVLNSSEGVSGTIFFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGNV  GDDGTATF+IIDKQI L GP+S++GR++VVH 
Sbjct: 61  PHFNPVGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIIDKQIPLTGPHSIIGRAVVVHG 120

Query: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+GG ELS TTGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

The following BLAST results are available for this feature:

BLAST of Csa2G013250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SODC1_MESCR	3.4e-66	74.83	Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 ...	[more]
SODC_IPOBA	4.4e-66	74.83	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2	[more]
SODC_SPIOL	2.9e-65	72.85	Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1	[more]
SODC_NICPL	2.9e-65	72.85	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2	[more]
ALL5B_OLEEU	6.4e-65	71.52	Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2	[more]

BLAST of Csa2G013250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIH2_CUCSA	3.1e-82	100.00	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_2G013250 PE=3 SV=1	[more]
A0A0D2U2R5_GOSRA	3.7e-67	78.15	Superoxide dismutase [Cu-Zn] OS=Gossypium raimondii GN=B456_013G192900 PE=3 SV=1	[more]
D2D329_GOSHI	1.8e-66	77.48	Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum PE=2 SV=1	[more]
A9PAB4_POPTR	1.8e-66	77.48	Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=POPTR_0005s04590g PE=2 SV...	[more]
A0A0B0N3U9_GOSAR	2.4e-66	77.48	Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum GN=F383_34570 PE=3 SV=1	[more]

BLAST of Csa2G013250 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08830.1	3.1e-65	72.19	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	2.1e-50	58.67	copper/zinc superoxide dismutase 3	[more]
AT2G28190.1	1.1e-49	61.49	copper/zinc superoxide dismutase 2	[more]

BLAST of Csa2G013250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442877\|ref\|XP_004139207.1\|	4.4e-82	100.00	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|659070538\|ref\|XP_008455574.1\|	1.6e-79	97.37	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|823263606\|ref\|XP_012464569.1\|	5.3e-67	78.15	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|211906512\|gb\|ACJ11749.1\|	2.6e-66	77.48	copper/zinc superoxide dismutase [Gossypium hirsutum]	[more]
gi\|566169463\|ref\|XP_006382702.1\|	2.6e-66	77.48	Cu/Zn superoxide dismutase family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone

Vocabulary: **Biological Process**
Term	Definition
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006801	superoxide metabolic process
biological_process	GO:0090378	seed trichome elongation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084816	cucumber EST collection version 3.0	transcribed_cluster
CU118537	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G013250.1	Csa2G013250.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU118537	CU118537	transcribed_cluster
CU084816	CU084816	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 98..120 score: 3.1E-45coord: 43..65 score: 3.1E-45coord: 123..149 score: 3.1E-45coord: 79..88 score: 3.1
IPR001424	Superoxide dismutase, copper/zinc binding domain	GENE3D	G3DSA:2.60.40.200		coord: 2..151 score: 6.7
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 11..148 score: 2.5
IPR001424	Superoxide dismutase, copper/zinc binding domain	unknown	SSF49329	Cu,Zn superoxide dismutase-like	coord: 2..150 score: 2.75
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53 scor
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148 scor
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..151 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G013250	Cla019840	Watermelon (97103) v1	cuwmB147
Csa2G013250	MELO3C004342	Melon (DHL92) v3.5.1	cumeB139
Csa2G013250	ClCG02G016260	Watermelon (Charleston Gray)	cuwcgB122
Csa2G013250	Lsi11G004820	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G013250	MELO3C004342.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G013250	Cla97C02G042100	Watermelon (97103) v2	cuwmbB118
Csa2G013250	Bhi06G001484	Wax gourd	cuwgoB137
Csa2G013250	CSPI02G03340	Wild cucumber (PI 183967)	cpicuB065
Csa2G013250	Cucsa.133590	Cucumber (Gy14) v1	cgycuB184
Csa2G013250	CmaCh05G011720	Cucurbita maxima (Rimu)	cmacuB791
Csa2G013250	CmoCh05G011970	Cucurbita moschata (Rifu)	cmocuB783
Csa2G013250	CsGy2G003440	Cucumber (Gy14) v2	cgybcuB056
Csa2G013250	Carg23423	Silver-seed gourd	carcuB0324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G013250	Silver-seed gourd	carcuB0735
Csa2G013250	Cucurbita maxima (Rimu)	cmacuB173
Csa2G013250	Cucurbita moschata (Rifu)	cmocuB157
Csa2G013250	Cucurbita pepo (Zucchini)	cpecuB103
Csa2G013250	Cucurbita pepo (Zucchini)	cpecuB820