Carg23423 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23423
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Superoxide dismutase [Cu-Zn]
Location	Cucurbita_argyrosperma_scaffold_335 : 66189 .. 69650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTTCGCTACCGATTCCTCCAGCCTCCGTGCATACAAATCTCGCGCCACTTCAATGCTCTTTAACTTCTCTTTCCACTGCAGTGAAGCTCATCCTTGGTAATGATTCTCTCCCATTTCTTCTGTAATTTCAGTGTTCTTTTATCTCTTTTTTTGCCGGATTATCGAATTCTGTGGTGAAGCTAAATTGTTGTATCCGATTTTTGTTTGAATTCTGTTTTCGACTTTTTTTTTTCTTTTCTTATAATTGCGTATTGAAGATTTAGGGATTGCGTTGTTTATGCTTCATTACTTTCCAGTTTCATATGGTTGTTACGTGTTATAACTCTTCGCTGAGATTTATATGGTTCTGATGGCTGTGTTTGATACCATTTCAATTTCTAAGTTACCTATTTTGAATAGAAAGAAGATTCATGTTGATTTCTGGAATGAAAACAGGCGCCTGATAGTTATTGTTTACTGTTAATTAGAAAGAGAGTTCATGATGATTTCTGGTACAAAAGCAGCTCACTATACTTGGAAATGAGCTTTCACTTTTGTTGACCTCGGGCTAAGTCGATACCTCAAACAATGGGGGGAGAGAAGAGAGCCTCAGTATGATAATGAAAGAAAAAGGGCGTCTGCACGGGCGGAATGGATGAGCGAAAGGTGCCATGCCATGGAGTGAGGAATATCTCGAGTCTCATGTAAGACAAGAAACAAAACCTCGAGGTGCTGCCCAGGAACTGCGGGACCTTCTCGAACACAGGATAGGCAATTGAGATCTCGAACTAGCCTATTCTATTTACCTTGTAAAAGAGAGAAAGAAAGAAGGGATAGGAGAATTCATCTTTCTTCTTCTTTTACACGTTTCGAGCTCCCGAAGTCAATATTTAGCACCTTCCTTCTTAGGTTGTTATAAATGGTATCAGAGCCAGACATCGAGTGATGCCAATGAAGAGGCTGAGCCCTGAAGGGGGTGGACACGAAATGGTGTGCCAGTAAGGACATTGGGCCCCGAAGGGGGTAGATTGAGGGGTCCCACATCGATTTGAGAAGAGAACGAGTGTCATTGAGGACGCTGGCCCTGAAGGGGTGGTGGGGTGGATTGTGAGATCCCACCTCAGTTGGGGAGGAGAACGAAACCAAACTGATGAGCTCTTCACCAACCTGGTGTAACAATGTCATAACTGACTACAACTTGAACTGATTTAAGATGTTGAAGATTAGCATTGATCTTGTCCCCAAAATTTGGCCACTGGGATGACTTTTTGTGTCTTTCAGATTTTTGCTTTAGTGAATTCTCATTGTTCGTTGACTATCACCATGAAGAATATGTTCAAAAGTGAAATTTCCTTGGTTTACTTTGTTGATCAGCATCCAATTTTACCAGTTATTTCAGCTCTTCTGATAACCTTCATTGGGTTTGAGTTCAGTTAACGCAAAACAATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTAGCTCAAATCGTAGTTTGAAATTTTAATTCATACAGATTTTTTGTTTTATTGTTTTTTTTCATAGTTAGTATATTTTTCAGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTCGGGGACACTACCAATGGTTGCTCATCGACTGGTACGTTCTCATGAGTAACACCCTTTTAGTTCCTCAATGTTAATTACAGAGTGTCCATTGGAACTATTGGCACATTATGACTCTACTTGCAAGCAAATTGCTCGCAGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTGTGTTTAATACTGTTCCATATTGCATTTCATTCTCCCTGAATTTTTTTTTTAGTAAACTGGACCCAAATGATTAGCCCCTCTAAAATGCATTCCACGTCGGTTAGGGAGGAGAACAAAACATTCTTTATAAGGGCGTGAAAACTTCTCTCCCTAGTAGACGCGTTTTAAAATCCTTGAGGGGAATCCCAAAAGGGAGAGCCCAAAGACGACAATATCGATTAGCGATGGGCTTGGGTTGTTACACCTCATGATTCCAGCTTCCTCCCCATCTCCTATTGATAACAATATTAGAAAAAATCATGAATTTCATGTTAAAGCACTCTTTCTTTTCCTTGTTTAGGATTAATTTGACATGATTGTAAAGATGGTTACTGTCTATTATACAGGTACTGCTACTTTCTCTATTATTGACAAACAGGTTTGGACAATTTAATGTTTATTTGGATGTTTCACCATCTCTACTAAAAGTCTCAGCTAGTGAGCATCATTTGTTTCTATGTTATGCAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTAATATTATTTTATAAATATTCATAGCTATATTTCCAGAAAGAATCCCACAGATTGTAACTTATTAATATGATCTTCTTCGAATTCAGTGATATCCTTTCGGGGTTCTTTGCTTTTTTCACTTTGTACGTGTAGACATCCATTTTCTTCACATTTATATAACTAACTTTACTTGAATCTTAAACCATGAGATTATTTAATGTGCTGGAAGTATCGATCTTTGAAATGTATGTTCCCTTCGATTAATTATAAGCCTCCCCTTTGTCTTTGCACGTCAAGTAGGTGACCTCCACCAGGATGACCAAATAAAGAAATCTGAAGCATAATCTGTGAACTGTTCTGATCTTGTCTGCAGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGTAAGTTACAAAATTTCTCATTACTGGTTGGCTTTGTAATAATGGTTGTGTCCCCAAATAAATCATTGAGGACGATATCACGACGTTGCACGGTTGAAAAAGTATAACCCATATTTTAATATGCACATAGCGTATTGATTGGGACTTTTTGTGGGACAAATCTGTTCTCGAGCAACTTTTTAGTTGGCATAAACATCCATTATTCGGTGTTTCTTGCAGGCGTTATCGGGCTGCAAGAGTGAAGTACATTTCGACCGCCATGGTTTAATGATGAGCGATGAAGTAGCGGAGTATGCAAAGCTATACTTTGGTTTCCAACACATATACAGTGTATTAAACTTGGTATGTGAAAAGGTATGAAAAGGCATGGTGAAGTTGGAAGTCTTATATCAGAAGTAAATAAGATTAGAGTTTATTGTATCAATACTCCACTTCATATAGATTTACATTATAAACAAATGATATTTTGCTCCTTTCAACAATCTTATGCAATTATAAAGGTTTTTAAATCATAGATTACATGTAATTAAATATTATGAATCCAAGGTTAATGGAAACTATTCTAAACAACATAG

mRNA sequence

TATGTTCGCTACCGATTCCTCCAGCCTCCGTGCATACAAATCTCGCGCCACTTCAATGCTCTTTAACTTCTCTTTCCACTGCAGTGAAGCTCATCCTTGTTATTTCAGCTCTTCTGATAACCTTCATTGGGTTTGAGTTCAGTTAACGCAAAACAATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTCGGGGACACTACCAATGGTTGCTCATCGACTGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTACTGCTACTTTCTCTATTATTGACAAACAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGCGTTATCGGGCTGCAAGAGTGAAGTACATTTCGACCGCCATGGTTTAATGATGAGCGATGAAGTAGCGGAGTATGCAAAGCTATACTTTGGTTTCCAACACATATACAGTGTATTAAACTTGGTATGTGAAAAGGTATGAAAAGGCATGGTGAAGTTGGAAGTCTTATATCAGAAGTAAATAAGATTAGAGTTTATTGTATCAATACTCCACTTCATATAGATTTACATTATAAACAAATGATATTTTGCTCCTTTCAACAATCTTATGCAATTATAAAGGTTTTTAAATCATAGATTACATGTAATTAAATATTATGAATCCAAGGTTAATGGAAACTATTCTAAACAACATAG

Coding sequence (CDS)

ATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTCGGGGACACTACCAATGGTTGCTCATCGACTGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTACTGCTACTTTCTCTATTATTGACAAACAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGCGTTATCGGGCTGCAAGAGTGA

Protein sequence

MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIACGVIGLQE

Homology

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BLAST of Carg23423 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 1.2e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

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BLAST of Carg23423 vs. NCBI nr
Match: XP_022946180.1 (superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 307.8 bits (787), Expect = 2.1e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

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BLAST of Carg23423 vs. NCBI nr
Match: XP_022999146.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 302.8 bits (774), Expect = 6.8e-79
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

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BLAST of Carg23423 vs. NCBI nr
Match: XP_022946178.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata] >XP_022946179.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 302.0 bits (772), Expect = 1.2e-78
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

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BLAST of Carg23423 vs. NCBI nr
Match: XP_004139207.1 (PREDICTED: superoxide dismutase [Cu-Zn] 1 [Cucumis sativus] >XP_011648784.1 PREDICTED: superoxide dismutase [Cu-Zn] 1 [Cucumis sativus] >KGN60844.1 hypothetical protein Csa_2G013250 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 3.8e-74
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV G++FF+QNGNGPT + GNISGL  GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

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BLAST of Carg23423 vs. TAIR10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1)

HSP 1 Score: 240.7 bits (613), Expect = 5.7e-64
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV GT+FF Q G+G TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

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BLAST of Carg23423 vs. TAIR10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3)

HSP 1 Score: 187.2 bits (474), Expect = 7.5e-48
Identity = 87/150 (58.00%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 2   VKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V+G + F Q+ +G T V G ISGL+PG HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           PDDLG+G  +LS +TGNAG R+ CG+IGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

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BLAST of Carg23423 vs. TAIR10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2)

HSP 1 Score: 170.2 bits (430), Expect = 9.5e-43
Identity = 82/121 (67.77%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 30  VRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGNLVAG 89
           V   I+GLTPG HGFH+H  GDTTNGC STGPHFNP    HGAP+DE RH GDLGN+ A 
Sbjct: 93  VNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINAN 152

Query: 90  DDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIACGVIG 149
            DG A  +I+D QI L GPNSV+GR+ VVH   DDLG+G  ELSLTTGNAG R+ACGVIG
Sbjct: 153 ADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIG 212

Query: 150 L 151
           L
Sbjct: 213 L 213

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BLAST of Carg23423 vs. TAIR10
Match: AT1G12520.1 (copper chaperone for SOD1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 37/124 (29.84%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           +V A         + G V F Q       +  N +GL+PG H + ++  GD TNG +STG
Sbjct: 160 LVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTG 219

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
             +NP     G        +GDLG L A  +G A +S   +++ +     ++GR++VV+ 
Sbjct: 220 SLYNPFQDQTG-----TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYK 275

Query: 121 DPDD 125
             D+
Sbjct: 280 TDDN 275

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BLAST of Carg23423 vs. Swiss-Prot
Match: sp|P93258|SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.5e-65
Identity = 116/151 (76.82%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAV VL S++GV GTV F Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLGRG  ELS  TGNAG R+ACGVIGLQ
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACGVIGLQ 151

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BLAST of Carg23423 vs. Swiss-Prot
Match: sp|Q07796|SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 7.2e-64
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GV GT+FF+Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NSV+GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS +TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. Swiss-Prot
Match: sp|Q42611|SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 113/151 (74.83%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K V VL S++GVKGT+FF Q GNG TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           +PDDLG+G  ELSLTTGNAG R+ACG+IGLQ
Sbjct: 121 EPDDLGKGGHELSLTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. Swiss-Prot
Match: sp|P09678|SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC PE=1 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 112/151 (74.17%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GVKGT+FF   GNG TTV G +SGL PGLHGFHVHALGD TNGC STG
Sbjct: 1   MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN++ GDDGTATF+I D QI L GPNS++GR+IVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL+TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. Swiss-Prot
Match: sp|C0HK70|SODC_ZINOF (Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-63
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVKGT++F Q G+GPTTV G+I+GL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFVQEGDGPTTVTGSITGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGN  AG+DG  T S++D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNATAGEDGIVTVSVVDSQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS TTGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. TrEMBL
Match: tr|A0A0A0LIH2|A0A0A0LIH2_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.5e-74
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV G++FF+QNGNGPT + GNISGL  GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of Carg23423 vs. TrEMBL
Match: tr|A0A1S3C1D1|A0A1S3C1D1_CUCME (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103495717 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 7.4e-74
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GT+FF+QNGNGPTT+ GNISGL  GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGD+GTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of Carg23423 vs. TrEMBL
Match: tr|A0A2P5R123|A0A2P5R123_GOSBA (Superoxide dismutase [Cu-Zn] OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22562 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.1e-64
Identity = 117/151 (77.48%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL SN+GV GTVFF+Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSNEGVSGTVFFSQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGN+  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSIADKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS +TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. TrEMBL
Match: tr|A9PAB4|A9PAB4_POPTR (Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.3e-64
Identity = 116/151 (76.82%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GV GT+FF Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLNSSEGVSGTIFFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGN+  GDDGTATF+IIDKQI L GP+S++GR++VVH 
Sbjct: 61  PHFNPVGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIIDKQIPLTGPHSIIGRAVVVHG 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS TTGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. TrEMBL
Match: tr|Q3SAX1|Q3SAX1_GOSHI (Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum OX=3635 GN=LOC107893157 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 7.0e-64
Identity = 117/151 (77.48%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL SN+GV GTVFF+Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLGSNEGVSGTVFFSQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGN+  GDDG A+FSI DKQI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS +TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

The following BLAST results are available for this feature:

BLAST of Carg23423 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999148.1	1.2e-80	99.34	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima]	[more]
XP_022946180.1	2.1e-80	99.34	superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata]	[more]
XP_022999146.1	6.8e-79	96.79	superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147....	[more]
XP_022946178.1	1.2e-78	96.79	superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata] >XP_02294617...	[more]
XP_004139207.1	3.8e-74	91.45	PREDICTED: superoxide dismutase [Cu-Zn] 1 [Cucumis sativus] >XP_011648784.1 PRED...	[more]

BLAST of Carg23423 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08830.1	5.7e-64	73.51	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	7.5e-48	58.00	copper/zinc superoxide dismutase 3	[more]
AT2G28190.1	9.5e-43	67.77	copper/zinc superoxide dismutase 2	[more]
AT1G12520.1	3.4e-08	29.84	copper chaperone for SOD1	[more]

BLAST of Carg23423 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93258\|SODC1_MESCR	8.5e-65	76.82	Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
sp\|Q07796\|SODC_IPOBA	7.2e-64	74.17	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2	[more]
sp\|Q42611\|SODC1_BRAJU	1.2e-63	74.83	Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3	[more]
sp\|P09678\|SODC_BRAOC	1.2e-63	74.17	Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC...	[more]
sp\|C0HK70\|SODC_ZINOF	1.6e-63	74.17	Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1	[more]

BLAST of Carg23423 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIH2\|A0A0A0LIH2_CUCSA	2.5e-74	91.45	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=...	[more]
tr\|A0A1S3C1D1\|A0A1S3C1D1_CUCME	7.4e-74	91.45	Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103495717 PE=3 SV=1	[more]
tr\|A0A2P5R123\|A0A2P5R123_GOSBA	4.1e-64	77.48	Superoxide dismutase [Cu-Zn] OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22562 PE...	[more]
tr\|A9PAB4\|A9PAB4_POPTR	5.3e-64	76.82	Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]
tr\|Q3SAX1\|Q3SAX1_GOSHI	7.0e-64	77.48	Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum OX=3635 GN=LOC107893157 PE=2 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR036423	SOD-like_Cu/Zn_dom_sf
IPR001424	SOD_Cu_Zn_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006801	superoxide metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23423-RA	Carg23423-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 123..149 score: 68.5 coord: 98..120 score: 57.24 coord: 79..88 score: 70.93 coord: 43..65 score: 78.93
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 11..148 e-value: 4.6E-52 score: 175.9
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 2..145 e-value: 6.70167E-60 score: 183.616
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	G3DSA:2.60.40.200		coord: 1..152 e-value: 2.5E-66 score: 224.6
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	SSF49329	Cu,Zn superoxide dismutase-like	coord: 2..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..77
None	No IPR available	PANTHER	PTHR10003:SF31	SUPEROXIDE DISMUTASE CU-ZN 3	coord: 2..151
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 2..151
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23423	Cla019840	Watermelon (97103) v1	carwmB0290
Carg23423	Csa2G013250	Cucumber (Chinese Long) v2	carcuB0324
Carg23423	MELO3C004342	Melon (DHL92) v3.5.1	carmeB0298
Carg23423	ClCG02G016260	Watermelon (Charleston Gray)	carwcgB0290
Carg23423	CSPI02G03340	Wild cucumber (PI 183967)	carcpiB0330
Carg23423	Cucsa.133590	Cucumber (Gy14) v1	carcgyB0349
Carg23423	CmaCh05G011720	Cucurbita maxima (Rimu)	carcmaB0410
Carg23423	CmoCh05G011970	Cucurbita moschata (Rifu)	carcmoB0405
Carg23423	Lsi11G004820	Bottle gourd (USVL1VR-Ls)	carlsiB271
Carg23423	CsGy2G003440	Cucumber (Gy14) v2	carcgybB0310
Carg23423	MELO3C004342.2	Melon (DHL92) v3.6.1	carmedB0309
Carg23423	CsaV3_2G004490	Cucumber (Chinese Long) v3	carcucB0330
Carg23423	Cla97C02G042100	Watermelon (97103) v2	carwmbB0306
Carg23423	Bhi06G001484	Wax gourd	carwgoB0384

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23423	Silver-seed gourd	carcarB325
Carg23423	Cucurbita maxima (Rimu)	carcmaB0409
Carg23423	Cucurbita moschata (Rifu)	carcmoB0404
Carg23423	Cucurbita pepo (Zucchini)	carcpeB0410
Carg23423	Cucurbita pepo (Zucchini)	carcpeB0411