Csa2G006010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G006010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 1007605 .. 1007874 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCAATCTACTCATCTTTCGCCCTATCAGAATCCAACCATCTGCCACCTCTGGCTCCAGCTCCGGTCACCGAAAACCTATATCCATACCCTGTCGCCACGGTTGGCCTCAATGGAGACTTGACCCACCAGACTACATCGGTGACAACGTGGAGCCAGATTCATATTCAACAAAGAAGGTGACAGAATCCCAACTCTCTGCCGGTTGCTTAACAGAGGAGAAGGCAAAGCAACTCCGAATTATGACGACGAGGTATAATACATGA

mRNA sequence

ATGACCACCAATCTACTCATCTTTCGCCCTATCAGAATCCAACCATCTGCCACCTCTGGCTCCAGCTCCGGTCACCGAAAACCTATATCCATACCCTGTCGCCACGGTTGGCCTCAATGGAGACTTGACCCACCAGACTACATCGGTGACAACGTGGAGCCAGATTCATATTCAACAAAGAAGGTGACAGAATCCCAACTCTCTGCCGGTTGCTTAACAGAGGAGAAGGCAAAGCAACTCCGAATTATGACGACGAGGTATAATACATGA

Coding sequence (CDS)

ATGACCACCAATCTACTCATCTTTCGCCCTATCAGAATCCAACCATCTGCCACCTCTGGCTCCAGCTCCGGTCACCGAAAACCTATATCCATACCCTGTCGCCACGGTTGGCCTCAATGGAGACTTGACCCACCAGACTACATCGGTGACAACGTGGAGCCAGATTCATATTCAACAAAGAAGGTGACAGAATCCCAACTCTCTGCCGGTTGCTTAACAGAGGAGAAGGCAAAGCAACTCCGAATTATGACGACGAGGTATAATACATGA

Protein sequence

MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTKKVTESQLSAGCLTEEKAKQLRIMTTRYNT*
Homology
[Close]
BLAST of Csa2G006010 vs. TrEMBL
Match: A0A0A0LI01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006010 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60
          MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60

Query: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 90
          KVTESQLSAGCLTEEKAKQLRIMTTRYNT
Sbjct: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 89

[Close]
BLAST of Csa2G006010 vs. NCBI nr
Match: gi|700205535|gb|KGN60654.1| (hypothetical protein Csa_2G006010 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.3e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60
          MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60

Query: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 90
          KVTESQLSAGCLTEEKAKQLRIMTTRYNT
Sbjct: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 89

[Close]
BLAST of Csa2G006010 vs. NCBI nr
Match: gi|659071052|ref|XP_008457932.1| (PREDICTED: uncharacterized protein LOC103497487 isoform X2 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-27
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 1 

Query: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60
          MTTNLLIFRPIRIQ SATSGSSSGHRKPI  P R G PQWR D PDYI DN+EPD  ST+
Sbjct: 1  MTTNLLIFRPIRIQQSATSGSSSGHRKPI--PHRKGRPQWRPDLPDYISDNMEPDLDSTE 60

Query: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 90
          +VTESQLS GC T EKAKQLRIMTT+ N+
Sbjct: 61 EVTESQLSVGCFT-EKAKQLRIMTTKANS 86

[Close]
BLAST of Csa2G006010 vs. NCBI nr
Match: gi|659071050|ref|XP_008457925.1| (PREDICTED: uncharacterized protein LOC103497487 isoform X1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-21
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 8  FRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTKKVTESQL 67
          F P  IQ SATSGSSSGHRKPI  P R G PQWR D PDYI DN+EPD  ST++VTESQL
Sbjct: 11 FLPQLIQQSATSGSSSGHRKPI--PHRKGRPQWRPDLPDYISDNMEPDLDSTEEVTESQL 70

Query: 68 SAGCLTEEKAKQLRIMTTRYNT 90
          S GC T EKAKQLRIMTT+ N+
Sbjct: 71 SVGCFT-EKAKQLRIMTTKANS 89

The following BLAST results are available for this feature:
BLAST of Csa2G006010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI01_CUCSA3.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006010 PE=4 SV=1[more]
BLAST of Csa2G006010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205535|gb|KGN60654.1|4.3e-45100.00hypothetical protein Csa_2G006010 [Cucumis sativus][more]
gi|659071052|ref|XP_008457932.1|4.1e-2777.53PREDICTED: uncharacterized protein LOC103497487 isoform X2 [Cucumis melo][more]
gi|659071050|ref|XP_008457925.1|7.5e-2171.95PREDICTED: uncharacterized protein LOC103497487 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU152478cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G006010.1Csa2G006010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU152478CU152478transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G006010Cla016734Watermelon (97103) v1cuwmB162
Csa2G006010MELO3C004529Melon (DHL92) v3.5.1cumeB140
Csa2G006010ClCG11G002800Watermelon (Charleston Gray)cuwcgB096
Csa2G006010Lsi11G002940Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G006010MELO3C004529.2Melon (DHL92) v3.6.1cumedB133
Csa2G006010Cla97C11G209260Watermelon (97103) v2cuwmbB103
Csa2G006010Bhi06G001665Wax gourdcuwgoB130
Csa2G006010Cp4.1LG11g10920Cucurbita pepo (Zucchini)cpecuB103
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G006010Silver-seed gourdcarcuB0041
Csa2G006010Silver-seed gourdcarcuB0042
Csa2G006010Silver-seed gourdcarcuB0139
Csa2G006010Silver-seed gourdcarcuB0282
Csa2G006010Silver-seed gourdcarcuB0598
Csa2G006010Silver-seed gourdcarcuB0988
Csa2G006010Watermelon (97103) v2cuwmbB142
Csa2G006010Watermelon (97103) v2cuwmbB157
Csa2G006010Watermelon (97103) v2cuwmbB162
Csa2G006010Wax gourdcuwgoB172
Csa2G006010Wax gourdcuwgoB214
Csa2G006010Cucumber (Chinese Long) v2cucuB005
Csa2G006010Cucumber (Chinese Long) v2cucuB049
Csa2G006010Cucumber (Chinese Long) v2cucuB084
Csa2G006010Cucumber (Gy14) v1cgycuB150
Csa2G006010Cucumber (Gy14) v1cgycuB234
Csa2G006010Cucurbita maxima (Rimu)cmacuB075
Csa2G006010Cucurbita maxima (Rimu)cmacuB116
Csa2G006010Cucurbita maxima (Rimu)cmacuB119
Csa2G006010Cucurbita maxima (Rimu)cmacuB172
Csa2G006010Cucurbita maxima (Rimu)cmacuB173
Csa2G006010Cucurbita maxima (Rimu)cmacuB791
Csa2G006010Cucurbita moschata (Rifu)cmocuB065
Csa2G006010Cucurbita moschata (Rifu)cmocuB103
Csa2G006010Cucurbita moschata (Rifu)cmocuB105
Csa2G006010Cucurbita moschata (Rifu)cmocuB157
Csa2G006010Cucurbita moschata (Rifu)cmocuB783
Csa2G006010Melon (DHL92) v3.5.1cumeB121
Csa2G006010Watermelon (Charleston Gray)cuwcgB148
Csa2G006010Watermelon (Charleston Gray)cuwcgB164
Csa2G006010Watermelon (Charleston Gray)cuwcgB168
Csa2G006010Watermelon (97103) v1cuwmB110
Csa2G006010Watermelon (97103) v1cuwmB120
Csa2G006010Watermelon (97103) v1cuwmB168
Csa2G006010Cucurbita pepo (Zucchini)cpecuB370
Csa2G006010Cucurbita pepo (Zucchini)cpecuB662
Csa2G006010Cucurbita pepo (Zucchini)cpecuB821
Csa2G006010Bottle gourd (USVL1VR-Ls)culsiB138
Csa2G006010Bottle gourd (USVL1VR-Ls)culsiB113
Csa2G006010Bottle gourd (USVL1VR-Ls)culsiB131
Csa2G006010Bottle gourd (USVL1VR-Ls)culsiB141
Csa2G006010Cucumber (Gy14) v2cgybcuB016
Csa2G006010Cucumber (Gy14) v2cgybcuB056
Csa2G006010Cucumber (Gy14) v2cgybcuB061
Csa2G006010Cucumber (Gy14) v2cgybcuB302
Csa2G006010Melon (DHL92) v3.6.1cumedB118
Csa2G006010Melon (DHL92) v3.6.1cumedB099
Csa2G006010Melon (DHL92) v3.6.1cumedB105