Csa2G006010.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G006010.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 1007605 .. 1007874 (+)
Sequence length270
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCAATCTACTCATCTTTCGCCCTATCAGAATCCAACCATCTGCCACCTCTGGCTCCAGCTCCGGTCACCGAAAACCTATATCCATACCCTGTCGCCACGGTTGGCCTCAATGGAGACTTGACCCACCAGACTACATCGGTGACAACGTGGAGCCAGATTCATATTCAACAAAGAAGGTGACAGAATCCCAACTCTCTGCCGGTTGCTTAACAGAGGAGAAGGCAAAGCAACTCCGAATTATGACGACGAGGTATAATACATGA

mRNA sequence

ATGACCACCAATCTACTCATCTTTCGCCCTATCAGAATCCAACCATCTGCCACCTCTGGCTCCAGCTCCGGTCACCGAAAACCTATATCCATACCCTGTCGCCACGGTTGGCCTCAATGGAGACTTGACCCACCAGACTACATCGGTGACAACGTGGAGCCAGATTCATATTCAACAAAGAAGGTGACAGAATCCCAACTCTCTGCCGGTTGCTTAACAGAGGAGAAGGCAAAGCAACTCCGAATTATGACGACGAGGTATAATACATGA

Coding sequence (CDS)

ATGACCACCAATCTACTCATCTTTCGCCCTATCAGAATCCAACCATCTGCCACCTCTGGCTCCAGCTCCGGTCACCGAAAACCTATATCCATACCCTGTCGCCACGGTTGGCCTCAATGGAGACTTGACCCACCAGACTACATCGGTGACAACGTGGAGCCAGATTCATATTCAACAAAGAAGGTGACAGAATCCCAACTCTCTGCCGGTTGCTTAACAGAGGAGAAGGCAAAGCAACTCCGAATTATGACGACGAGGTATAATACATGA

Protein sequence

MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTKKVTESQLSAGCLTEEKAKQLRIMTTRYNT*
Homology
[Close]
BLAST of Csa2G006010.1 vs. TrEMBL
Match: A0A0A0LI01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006010 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60
          MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60

Query: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 90
          KVTESQLSAGCLTEEKAKQLRIMTTRYNT
Sbjct: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 89

[Close]
BLAST of Csa2G006010.1 vs. NCBI nr
Match: gi|700205535|gb|KGN60654.1| (hypothetical protein Csa_2G006010 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.3e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60
          MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60

Query: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 90
          KVTESQLSAGCLTEEKAKQLRIMTTRYNT
Sbjct: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 89

[Close]
BLAST of Csa2G006010.1 vs. NCBI nr
Match: gi|659071052|ref|XP_008457932.1| (PREDICTED: uncharacterized protein LOC103497487 isoform X2 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-27
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 1 

Query: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60
          MTTNLLIFRPIRIQ SATSGSSSGHRKPI  P R G PQWR D PDYI DN+EPD  ST+
Sbjct: 1  MTTNLLIFRPIRIQQSATSGSSSGHRKPI--PHRKGRPQWRPDLPDYISDNMEPDLDSTE 60

Query: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 90
          +VTESQLS GC T EKAKQLRIMTT+ N+
Sbjct: 61 EVTESQLSVGCFT-EKAKQLRIMTTKANS 86

[Close]
BLAST of Csa2G006010.1 vs. NCBI nr
Match: gi|659071050|ref|XP_008457925.1| (PREDICTED: uncharacterized protein LOC103497487 isoform X1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-21
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 8  FRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTKKVTESQL 67
          F P  IQ SATSGSSSGHRKPI  P R G PQWR D PDYI DN+EPD  ST++VTESQL
Sbjct: 11 FLPQLIQQSATSGSSSGHRKPI--PHRKGRPQWRPDLPDYISDNMEPDLDSTEEVTESQL 70

Query: 68 SAGCLTEEKAKQLRIMTTRYNT 90
          S GC T EKAKQLRIMTT+ N+
Sbjct: 71 SVGCFT-EKAKQLRIMTTKANS 89

The following BLAST results are available for this feature:
BLAST of Csa2G006010.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI01_CUCSA3.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006010 PE=4 SV=1[more]
BLAST of Csa2G006010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205535|gb|KGN60654.1|4.3e-45100.00hypothetical protein Csa_2G006010 [Cucumis sativus][more]
gi|659071052|ref|XP_008457932.1|4.1e-2777.53PREDICTED: uncharacterized protein LOC103497487 isoform X2 [Cucumis melo][more]
gi|659071050|ref|XP_008457925.1|7.5e-2171.95PREDICTED: uncharacterized protein LOC103497487 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G006010Csa2G006010gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G006010.1Csa2G006010.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G006010.1.cds1Csa2G006010.1.cds1CDS