Csa1G701340 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G701340
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein; contains IPR002885 (Pentatricopeptide repeat)
LocationChr1 : 28345093 .. 28348168 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCAAGTGCCAACCTTCTACAGATATTTACACAATGTTAATAAACGTGTATGGAAAAGTGAGCCTAAACAGGTTGTTAAGAACACTTTTATCAGTATTTGAATTTTTTTATCTGATTGCTTTAGTACAGGTATGATGGATCAAATAATATCTAGCTTACTGAAGCGTTTAAATTCTGTTTATGGGTTTCAATGATTTTTTGACGATACTTTATTATTTTAGTTTCTTTTAATATTTATTATTGTTTTTTCTTTTTTGCAATACTTTATGCAAATATTTGGTAATTCTTCTTTCCTTCTCATTTTCTGAATCTGGATTTATACATGGTTAATTTAGCAACTGGGATAACTGGTCTTCTTTGTTCAATTTTGATATATTGATATTTTCTATTTCACTTTTCATGAAAATGAAAAGAATAAGGAAAAGGCATTTTGAGTTAATAACTAGTTCTGGGAAGATTATCTGGTTTTTGGTCGGGACCAGGGATATATAATGAATGGGTGAATGAACCTTATCATGGCATGTGATGTCAGTTCATCAAACCACAACCATTGCATATCCATTGTGTCTGGTTTAACCTAAGCTCAATTCAGTTCTCTTGAACGCATGCTTAAATTGAGTCCAAATGGGAAGAAGCAATCATCTACATTTTTCACAAAAAAATCTTACGGCGAGAATGCCAGTCAGTGTAGTAATAGGACATATCAGTTTATCTGATAGGAATCCACTCTTCAATTTCTTCATCCCTTAAACTCCTCTCAACCTCAGGTCTCACGCAGCTTTATGAGAGGACCAATATTGAGATTGGCCATAATGTTTACTCTTCCAAAGAAAATCTCCAAATCCACCAAGAAAAAGTGTCATATTTTTGTACATAAGGTGGTGGGGAATCCCAGGGCCATCCCCTTACACCATTCTCCAGTTAATTGGGTGTGACACACCATCCAAACTTAGTCTTAACTTTTTGTATGAAGTTTCTAATTTTTTTTCTCAATTTCAAAGACAATAATGTTATGCACGTTGGAAAGAAAAATAGGAATAAGTAGGAAAGTTCCAGAGAACCAACTAGTTACGGAGAAAAGGAATGAGTAGAAAACTTCTGAGAGAACCAATTACTTGAAATAATCCGCTCTCTTGTAACCAGCCAAGCACGCTTCAGCTCTCGAGCCAACAAGAAATCATTTCCATCACCAGATGTGAAAATTCCTTTGGCTTAGGAGTATCTAGCAATGAAAACTCAAATATTAAAGAGAGCCGTCTCCTTTTAGGCATCCAAAATCCTCAATCACTTGCCTGACCCTTTGAATGGAAGGATGAATACACCATACCAGCCACAATAAGTTTAGTTATCTCCAGGCCTGAAGCTTCTGTAAAGATATTGACAATCCTGAATAAAAGCACTGGAATCTACTGTAGTATTTATGTGGATTTCAAATTTTGATTTTTAGTATTCTCTCCTAGTCTAATAATCATAGGTTTATGCAAGAAAGTAAGTCCTATTTGGCATTAAAGATATTTGATGAAATGAGAAGTCAAAGGTGCAAACCTAACATCTGCACCTTTACAGCTTTAGTAAACGCACTTGCTAGATAGGGACTTTGTGAGGAAACAGACGAAATATTTGAGCAAATGTAACAAGCTGGTTACAAACTTGATGCCTATGCTTATAATGCTCTCATGGAGTCATATAGGTAAAGTAAAATTAATCTGGTACGATCTTGTAGATGTAGTTTTCATTCTTGAAAGTAAAGTGGGTATGCAGTTGTCACTTCAAAATGGTCGACGGTACTTTGAAGGTCTGCTGGCATATGGTCATTGATGACTAGTGAGCTTTAGTAGGCAATAGAAATTTAATTTTCTTCTGACATTGTAATATTTGACAATCTTTGTACTTTTTTTTTGCAAGAACAAATTTCCTCTACGTTTTTAATGCATCATGCTGCAGTTAAGAACAATGTAGAACAATGGCTTATAAATTCGATGTTTTGTGCTTAGGCTTTATGTTTTCATGTGTTAGAAAATTTTAGATGGCCGTAATAGCCCTTTGATGTAATTTTTTCTTTACTAAAAAGTATACCTTCTTGGTCATTTGCAGTTGTGCTGGTTTTCCATTTGGAGCTACAGAAATATTTTCACTCATGCAATATATGGGATGTTATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCATGAAGGTATGTAAACTCAAGTTACATTTAGTAATTCTTCCATTAAGTTTCTTCTACTTGTTTCTCATTATTATAAAAATTTCTCCCATTTTTTTTTTCAGATTGAAGAGGCGATTGATCATATTGGACGATGTGGTATTCAACTCACCTCCACGCTAACATGCTGTTGTTTGTTGATTCCACTCTTTTGGCAATTTTCCTTTCAATCCATTATTGATTAGCAAAAGAGAAATTATCAGTTCCTACAATATAGTAATTGTAAAGGGAATGGATTTGTTAATAAGTTCAGGAAGGTTCTCCCATCAGCGCTTTAAGGATGTCCCTGAGAATGCTGACAACCATGGAAGGAGTGTAATTTTCAGATTGGTAATTTGAGTTATTTTCTTTCCTCTTCATGGAATACTGGTCTGATCCTCAAGCATGATGTAAGAGTTTCTTATTAAATTTGTTGGTGTGTACTAAGAAAAGTTGAACATGCTTCTTGGAATTTTAAAGAGAACAATTAATGTCTTAAGACAAGGGGATCCTTTGTCTCCTGTCGTAGATGTCTTAAGTCGGCCCATTTTCAAGGGGTGGAAGGAAACTTAATTGAGCCATTTAGGGTTGGTGGAATGAAGTGGTCTTATCGCATTTTCAATTTGCGGATGATACTATGTTATTTTGGTATGGCAAAGAGGAGTCCTTGATCCTTAACCATATTGTGACTTTTTCAGGGCTCAAAATCAACCGGAACAGATGTACAATTTTGGTAATTAATAGGTGATCAAGACAAGCTTAAGAAGTGGGCAGAGGCGTTTGATTGTGAGGTGGGTTCTCTCCCTTCTTCTTACCTTGGGCTTTTGTGGGTCCTAACTTGA

mRNA sequence

ATGGCTGCCAAGTGCCAACCTTCTACAGATATTTACACAATGTTAATAAACGTGTATGGAAAAGTGAGCCTAAACAGTTGTGCTGGTTTTCCATTTGGAGCTACAGAAATATTTTCACTCATGCAATATATGGGATGTTATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCATGAAGGTGATCAAGACAAGCTTAAGAAGTGGGCAGAGGCGTTTGATTGTGAGGTGGGTTCTCTCCCTTCTTCTTACCTTGGGCTTTTGTGGGTCCTAACTTGA

Coding sequence (CDS)

ATGGCTGCCAAGTGCCAACCTTCTACAGATATTTACACAATGTTAATAAACGTGTATGGAAAAGTGAGCCTAAACAGTTGTGCTGGTTTTCCATTTGGAGCTACAGAAATATTTTCACTCATGCAATATATGGGATGTTATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCATGAAGGTGATCAAGACAAGCTTAAGAAGTGGGCAGAGGCGTTTGATTGTGAGGTGGGTTCTCTCCCTTCTTCTTACCTTGGGCTTTTGTGGGTCCTAACTTGA

Protein sequence

MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT*
Homology
[Close]
BLAST of Csa1G701340 vs. Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.9e-15
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  Y +      AG+P+GA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 331 EPDVYVYNALMESYSR------AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 385

Query: 66  H 67
           H
Sbjct: 391 H 385


HSP 2 Score: 44.3 bits (103), Expect = 9.2e-04
Identity = 21/75 (28.00%), Postives = 42/75 (56.00%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRA 63
           +C+P+T+ Y ++IN+YGK S +      + + +++  M+   C P+  +Y  +V+A+ R 
Sbjct: 259 RCKPTTETYNLMINLYGKASKS------YMSWKLYCEMRSHQCKPNICTYTALVNAFARE 318

Query: 64  GLHEGDQDKLKKWAE 79
           GL E  ++  ++  E
Sbjct: 319 GLCEKAEEIFEQLQE 327

[Close]
BLAST of Csa1G701340 vs. TrEMBL
Match: A0A0A0LYJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701340 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60
           MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY
Sbjct: 1   MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60

Query: 61  GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT 100
           GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT
Sbjct: 61  GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT 99

[Close]
BLAST of Csa1G701340 vs. TrEMBL
Match: W9SSG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018488 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-14
Identity = 54/130 (41.54%), Postives = 58/130 (44.62%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLN--------------------------------------- 64
           CQPSTD YTMLIN+YGK S +                                       
Sbjct: 210 CQPSTDTYTMLINLYGKESKSCMSLKLFNEMRSQKCEPNICTYTALVNAFAREGLCEKAE 269

Query: 65  -------------------------SCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 71
                                    S AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAY
Sbjct: 270 EIFEQLQEAGHEPDVYAYNALIEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 329

[Close]
BLAST of Csa1G701340 vs. TrEMBL
Match: A0A067K256_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-14
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  Y +      AGFPFGA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 327 EPDVYAYNALMEAYSR------AGFPFGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 385

Query: 66  HEGDQ 71
           HE  Q
Sbjct: 387 HEDAQ 385

[Close]
BLAST of Csa1G701340 vs. TrEMBL
Match: A0A067K256_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-03
Identity = 25/74 (33.78%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAG 64
           CQPST+ YT+LIN++GK S +      + A ++F+ M+   C P+  +Y  +++A+ R G
Sbjct: 256 CQPSTETYTLLINLHGKASQS------YMALKLFNEMKTQKCKPNICTYTALMNAFAREG 315

Query: 65  LHEGDQDKLKKWAE 79
           L E  ++  ++  E
Sbjct: 316 LCEKAEEIFEQLQE 323


HSP 2 Score: 34.7 bits (78), Expect = 8.1e+01
Identity = 18/66 (27.27%), Postives = 36/66 (54.55%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P T +   ++N+YG++      G      E+ ++M+      D ++YNI+++ YGRAG 
Sbjct: 432 EPDTFVLNSMLNLYGRL------GQFEKMEEVLTVMEKGPYETDISTYNILINIYGRAGF 491

Query: 66  HEGDQD 72
            +  +D
Sbjct: 492 FDKMED 491


HSP 3 Score: 84.3 bits (207), Expect = 8.9e-14
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSL-----------------NSCAGFPFGATEIFSLMQYMGC 63
           +C+P+   YT L+N + +  L                 +S AG+P+GA EIFSLMQ+MGC
Sbjct: 304 QCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGC 363

Query: 64  YPDRASYNIMVDAYGRAGLH 67
            PDRASYNIMVDAYGRAGLH
Sbjct: 364 EPDRASYNIMVDAYGRAGLH 383

[Close]
BLAST of Csa1G701340 vs. TrEMBL
Match: D7LHS5_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_902608 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.6e-02
Identity = 22/75 (29.33%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRA 63
           +C+P+T+ Y ++IN+YGK S +      + + ++F  M+   C P+  +Y  +V+A+ R 
Sbjct: 269 RCKPTTETYNLMINLYGKASKS------YMSWKLFCEMRSHQCKPNICTYTALVNAFARE 328

Query: 64  GLHEGDQDKLKKWAE 79
           GL E  ++  ++  E
Sbjct: 329 GLCEKAEEIFEQLQE 337


HSP 2 Score: 84.3 bits (207), Expect = 8.9e-14
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 3   AKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGR 62
           A  +P    Y  L+  Y +      AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAYGR
Sbjct: 267 AGLEPDVYAYNALMEAYSR------AGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGR 326

Query: 63  AGLHEGDQ 71
           AGLHE  Q
Sbjct: 327 AGLHEDAQ 328

[Close]
BLAST of Csa1G701340 vs. TAIR10
Match: AT2G35130.2 (AT2G35130.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-16
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  Y +      AG+P+GA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 353 EPDVYVYNALMESYSR------AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 407

Query: 66  H 67
           H
Sbjct: 413 H 407


HSP 2 Score: 44.3 bits (103), Expect = 5.2e-05
Identity = 21/75 (28.00%), Postives = 42/75 (56.00%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRA 63
           +C+P+T+ Y ++IN+YGK S +      + + +++  M+   C P+  +Y  +V+A+ R 
Sbjct: 281 RCKPTTETYNLMINLYGKASKS------YMSWKLYCEMRSHQCKPNICTYTALVNAFARE 340

Query: 64  GLHEGDQDKLKKWAE 79
           GL E  ++  ++  E
Sbjct: 341 GLCEKAEEIFEQLQE 349

[Close]
BLAST of Csa1G701340 vs. NCBI nr
Match: gi|700211762|gb|KGN66858.1| (hypothetical protein Csa_1G701340 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60
           MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY
Sbjct: 1   MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60

Query: 61  GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT 100
           GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT
Sbjct: 61  GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGLLWVLT 99

[Close]
BLAST of Csa1G701340 vs. NCBI nr
Match: gi|659118262|ref|XP_008459029.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 isoform X2 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAG 64
           CQP+TD YTMLINVYGKVSLNS AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAYGRAG
Sbjct: 256 CQPATDTYTMLINVYGKVSLNSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAG 315

Query: 65  LHEGDQ 71
           LHE  Q
Sbjct: 316 LHEDAQ 321

[Close]
BLAST of Csa1G701340 vs. NCBI nr
Match: gi|659118262|ref|XP_008459029.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 isoform X2 [Cucumis melo])

HSP 1 Score: 43.1 bits (100), Expect = 3.3e-01
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATE-IFSLMQYMGCYPDRASYNIMVDAYGRAG 65
           +P T +   ++N+YG++         FG  E +FS MQ   C  D ++YNI+++ YGRAG
Sbjct: 368 KPDTFVMNSMLNLYGRLG-------QFGKMEDLFSTMQKGPCRADISTYNILINVYGRAG 423

Query: 66  LHE 68
             E
Sbjct: 428 FVE 423


HSP 2 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  Y      SCAGFPFG+ EIFSLMQ+MGC PDRASYNIMVDA+GRAGL
Sbjct: 356 EPDVYAYNALMEAY------SCAGFPFGSAEIFSLMQHMGCEPDRASYNIMVDAFGRAGL 415

Query: 66  HEGDQ---DKLKKWAE 79
           HE  Q   ++LK+  E
Sbjct: 416 HEHAQAMFEELKQQGE 425

[Close]
BLAST of Csa1G701340 vs. NCBI nr
Match: gi|672157100|ref|XP_008798244.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Phoenix dactylifera])

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-05
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRA 63
           +CQPS + YTM+IN+YGK + +S       A ++F+ M+   C P+  +Y  +++A+ R 
Sbjct: 284 RCQPSNETYTMMINLYGKANQSSM------ALKVFNEMKTERCKPNICTYTALINAFARE 343

Query: 64  GLHEGDQDKLKKWAEA 80
           GL E  ++  +K  EA
Sbjct: 344 GLCEKAEEVFEKMQEA 353


HSP 2 Score: 85.5 bits (210), Expect = 5.8e-14
Identity = 54/130 (41.54%), Postives = 58/130 (44.62%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLN--------------------------------------- 64
           CQPSTD YTMLIN+YGK S +                                       
Sbjct: 210 CQPSTDTYTMLINLYGKESKSCMSLKLFNEMRSQKCEPNICTYTALVNAFAREGLCEKAE 269

Query: 65  -------------------------SCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 71
                                    S AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAY
Sbjct: 270 EIFEQLQEAGHEPDVYAYNALIEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 329

[Close]
BLAST of Csa1G701340 vs. NCBI nr
Match: gi|743855867|ref|XP_010941649.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Elaeis guineensis])

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-14
Identity = 50/107 (46.73%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSL-----------------------------NSCAGFPFGA 63
           KC+P+   YT LIN + +  L                              S AGFPFG+
Sbjct: 315 KCKPNICTYTALINAFAREGLCEKAEKVFEEMQEAGHEPDVYAYNALMEAYSRAGFPFGS 374

Query: 64  TEIFSLMQYMGCYPDRASYNIMVDAYGRAGLHEGDQ---DKLKKWAE 79
            EIFSLMQYMGC PDRASYNIMVDA+GRAGLHE  Q   ++LK+  E
Sbjct: 375 AEIFSLMQYMGCEPDRASYNIMVDAFGRAGLHEDAQAMFEELKQQGE 421

The following BLAST results are available for this feature:
BLAST of Csa1G701340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP186_ARATH8.9e-1562.30Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN... [more]
BLAST of Csa1G701340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYJ9_CUCSA1.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701340 PE=4 SV=1[more]
W9SSG9_9ROSA4.0e-1441.54Uncharacterized protein OS=Morus notabilis GN=L484_018488 PE=4 SV=1[more]
A0A067K256_JATCU5.2e-1464.62Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1[more]
A0A067K256_JATCU1.9e-0333.78Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1[more]
D7LHS5_ARALL4.6e-0229.33Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata ... [more]
BLAST of Csa1G701340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35130.25.0e-1662.30 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Csa1G701340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211762|gb|KGN66858.1|1.5e-51100.00hypothetical protein Csa_1G701340 [Cucumis sativus][more]
gi|659118262|ref|XP_008459029.1|1.2e-2486.36PREDICTED: pentatricopeptide repeat-containing protein At2g35130 isoform X2 [Cuc... [more]
gi|659118262|ref|XP_008459029.1|3.3e-0136.51PREDICTED: pentatricopeptide repeat-containing protein At2g35130 isoform X2 [Cuc... [more]
gi|672157100|ref|XP_008798244.1|6.4e-0535.53PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Phoenix dactyl... [more]
gi|743855867|ref|XP_010941649.1|5.8e-1446.73PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Elaeis guineen... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099464cucumber EST collection version 3.0transcribed_cluster
CU124653cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G701340.1Csa1G701340.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099464CU099464transcribed_cluster
CU124653CU124653transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 52..67
score: 0.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 7..67
score: 7.2
NoneNo IPR availablePANTHERPTHR24015:SF421SUBFAMILY NOT NAMEDcoord: 7..67
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G701340Cla004611Watermelon (97103) v1cuwmB050
Csa1G701340CSPI01G34320Wild cucumber (PI 183967)cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G701340Watermelon (97103) v2cuwmbB011
Csa1G701340Wax gourdcuwgoB031
Csa1G701340Cucumber (Gy14) v1cgycuB470
Csa1G701340Cucurbita maxima (Rimu)cmacuB207
Csa1G701340Cucurbita maxima (Rimu)cmacuB400
Csa1G701340Cucurbita moschata (Rifu)cmocuB192
Csa1G701340Cucurbita moschata (Rifu)cmocuB387
Csa1G701340Melon (DHL92) v3.5.1cumeB017
Csa1G701340Watermelon (Charleston Gray)cuwcgB023
Csa1G701340Watermelon (97103) v1cuwmB044
Csa1G701340Cucurbita pepo (Zucchini)cpecuB021
Csa1G701340Cucurbita pepo (Zucchini)cpecuB518
Csa1G701340Bottle gourd (USVL1VR-Ls)culsiB033
Csa1G701340Cucumber (Gy14) v2cgybcuB002
Csa1G701340Melon (DHL92) v3.6.1cumedB012
Csa1G701340Silver-seed gourdcarcuB0123