CSPI01G34320 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G34320
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing protein
LocationChr1 : 29221957 .. 29224927 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCAAGTGCCAACCTTCTACAGATATTTACACAATGTTAATAAACGTGTATGGAAAAGTGAGCCTAAACAGGTTGTTAAGAACACTTTTATCAGTATTTGAATTTTTTTATCTGATTGCTTTAGTACAGGTATGATGGATCAAATAATATCTAGCTTACTGAAGCGTTTAAATTCTGTTTATGGGTTTCAATGATTTTTTGACGATACTTTATTATTTTAGTTTCTTTTAATATTTATTATTGTTTTTTCTTTTTTGCAATACTTTATGCAAATATTTGGTAATTCTTCTTTCCTTCTCATTTTCTGAATCTGGATTTATACGTGGTTAATTTAGCAACTGGGATAACTGGTCTTCTTTGTTCAATTTTGATATATTGATATTTTCTATTTCACTTTTCATGAAAATGAAAAGAATAAGGAAAAGGCATTTTGAGTTAATAACTAGTTCTGGGAAGATTATCTGGTTTTTGGTCGGGACCAGGGATATATAATGAATGGGTGAATGAACCTTATCATGGCATGTGATGTCAGTTCATCAAACCACAACCGTTGCATATCCATTGTGTCTGGTTTAACCTAAGCTCAATTCAGTTCTCTTGAACGCATGCTTAAATTGAGTCCAAATGGGAAGAAGCAATCTTCTACATTTTTCACAAAAAAATCTTACGGCGAGAATGCCAGTCAGTGTAGTAATAGGACATATCAGTTTATCTGATAGGAATCCACTCTTCAATTTCTTCATCCCTTAAACTCCTCTCAACCTCAGGTCTCACGCAGCTTTATGAGAGGACCAATATTGAGATTGGCCATAATGTTTACTCTTCCAAAGAAAATCTCCAAATCCACCAAGAAAAAGTGTCATATTTTTGTACATAAGGTGGTGGGGAATCCCAGGGCCATCCCCTTACACCATTCTCCAGTTAATTGGGTGTGACACACCATCCAAACTTAGTCTTAACTTTTTGTATGAAGTTTCTAATTTTTTTTCTCAATTTCAAAGACAATAATGTTATGCACGTTGGAAAGAAAAATAGGAATAAGTAGGAAAGTTCCAGAGAACCAACTAGTTACGGAGAAAAGGAATGAGTAGAAAACTTCTGAGAGAACCAATTACTTGAAATAATCCGCTCTCTTGTAACCAGCCAAGCACGCTTCAGCTCTCGAGCCAACAAGAAATCATTTCCATCACCAGATGTGAAAATTCCTTTGGCTTAGGAGTATCTAGCAATGAAAACTCAAATATTAAAGAGAGCCGTCTCCTTTTAGGCATCCAAAATCCTCAATCACTTGCCTGACCCTTTGAATGGAAGGATGAATACACCATACCAGCCACAATAAGTTTAGTTATCTCCAGGCCTGAAGCTTCTGTAAAGATATTGACAATCCTGAATAAAAGCACTGGAATCTACTGTAGTATTTATGTGGATTTCAAATTTTGATTTTTAGTATTCTCTCCTAGTCTAATAATCATAGGTTTATGCAAGAAAGTAAGTCCTATTTGGCATTAAAGATATTTGATGAAATGAGAAGTCAAAGGTGCAAACCTAACATCTGCACCTTTACAGCTTTAGTAAACGCACTTGCTAGATAGGGACTTTGTGAGGAAACAGACGAAATATTTGAGCAAATGTAACAAGCTGGTTACAAACTTGATGCCTATGCTTATAATGCTCTCATGGAGTCATATAGGTAAAGTAAAATTAATCTGGTACGATCTTGTAGATGTAGTTTTCATTCTTGAAAGTAAAGTGGGTATGCAGTTGTCACTTCAAAATGGTCGACGGTACTTTGAAGGTCTGCTGGCATATGGTCATTGATGACTAGTGAGCTTTAGTAGGCAATTGAAATTTAATTTTCTTCTAACATTGTAATATTTGACAATCTTTGTACTTTTTTTTTGCAAGAACAAATTTCCTCTACGTTTTTAATGCATCATGCTGCAGTTAAGAACAATGTAGAACAATGGCTTATAAATTCGATGTTTTGTGCTTAGGCTTTATGTTTTCATGTGTTAGAAAATTTTAGATGGCCGTAATAGCCCTTTGATGTAATTTTTTCTTTACTAAAAAGTATACCTTCTTGGTCATTTGCAGTTGTGCTGGTTTTCCATTTGGAGCTACAGAAATATTTTCACTCATGCAATATATGGGATGTTATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCATGAAGGTATGTAAACTCAAGTTACATTTAGTAATTCTTCCATTAAGTTTCTTCTAATTGTTTCTCATTATTATAAAAATTTCTCCCATTTTTTTTTTCAGATTGAAGAGGCGATTGATCATATTGGACGATGTGGTATTCAACTCACCTCCACGCTAACATGCTGTTGTTTGTTGATTCCACTCTTTTGGCAATTTTCCTTTCAATCCATTATTGATTAGCAAAAGAGAAATTATCAGGTCCTACAATATAGTAATTGTAAAGGGAATGGATTTGTTAATAAGTTCAGGAAGGTTCTCCCATCAGCGCTTTAAGGATGTCCCTGAGAATGCTGACAACCATGGAAGGAGTGTAATTTTCAGATTGGTAATTTGAGTTATTTTCTTTCCTCTTCATGGAATACTGGTCTGATCCTCAAGCATGATGTAAGAGTTTCTTATTAAATTTGTTGGTGTGTACTAAGAAAAGTTGAACATGCTTCTTGGAATTTTAAAGAGAACAATTAATGTCTTAAGACAAGGGGATCCTTTGTCTCCTGTCGTAGATGTCTTAAGTCGGCCCATTTTCAAGGGGTGGAAGGAAACTTAATTGAGCCATTTAGGGTTGGTGGAATGAAGTGGTCTTATCGCATTTTCAATTTGCGGATGATACTATGTTATTTTGGTATGGCAAAGAGGAGTCCTTGATCCTTAACCATATTGTGACTTTTTCAGGGCTCAAAATCAACAGGAACAGATGTACAATTTTGGTAA

mRNA sequence

ATGGCTGCCAAGTGCCAACCTTCTACAGATATTTACACAATGTTAATAAACGTGTATGGAAAAGTGAGCCTAAACAGTTGTGCTGGTTTTCCATTTGGAGCTACAGAAATATTTTCACTCATGCAATATATGGGATGTTATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCATGAAGGAAGGTTCTCCCATCAGCGCTTTAAGGATGTCCCTGAGAATGCTGACAACCATGGAAGGAGTGTAATTTTCAGATTGGGCTCAAAATCAACAGGAACAGATGTACAATTTTGGTAA

Coding sequence (CDS)

ATGGCTGCCAAGTGCCAACCTTCTACAGATATTTACACAATGTTAATAAACGTGTATGGAAAAGTGAGCCTAAACAGTTGTGCTGGTTTTCCATTTGGAGCTACAGAAATATTTTCACTCATGCAATATATGGGATGTTATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCATGAAGGAAGGTTCTCCCATCAGCGCTTTAAGGATGTCCCTGAGAATGCTGACAACCATGGAAGGAGTGTAATTTTCAGATTGGGCTCAAAATCAACAGGAACAGATGTACAATTTTGGTAA
Homology
[Close]
BLAST of CSPI01G34320 vs. Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  Y +      AG+P+GA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 331 EPDVYVYNALMESYSR------AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 385

Query: 66  H 67
           H
Sbjct: 391 H 385

[Close]
BLAST of CSPI01G34320 vs. TrEMBL
Match: A0A0A0LYJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701340 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60
          MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY
Sbjct: 1  MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60

Query: 61 GRAGLHEG 69
          GRAGLHEG
Sbjct: 61 GRAGLHEG 68

[Close]
BLAST of CSPI01G34320 vs. TrEMBL
Match: W9SSG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018488 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 53/127 (41.73%), Postives = 57/127 (44.88%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLN--------------------------------------- 64
           CQPSTD YTMLIN+YGK S +                                       
Sbjct: 210 CQPSTDTYTMLINLYGKESKSCMSLKLFNEMRSQKCEPNICTYTALVNAFAREGLCEKAE 269

Query: 65  -------------------------SCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 68
                                    S AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAY
Sbjct: 270 EIFEQLQEAGHEPDVYAYNALIEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 329

[Close]
BLAST of CSPI01G34320 vs. TrEMBL
Match: A0A067K256_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-14
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  Y +      AGFPFGA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 327 EPDVYAYNALMEAYSR------AGFPFGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 382

Query: 66  HE 68
           HE
Sbjct: 387 HE 382

[Close]
BLAST of CSPI01G34320 vs. TrEMBL
Match: D7LHS5_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_902608 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-14
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSL-----------------NSCAGFPFGATEIFSLMQYMGC 63
           +C+P+   YT L+N + +  L                 +S AG+P+GA EIFSLMQ+MGC
Sbjct: 304 QCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGC 363

Query: 64  YPDRASYNIMVDAYGRAGLH 67
            PDRASYNIMVDAYGRAGLH
Sbjct: 364 EPDRASYNIMVDAYGRAGLH 383

[Close]
BLAST of CSPI01G34320 vs. TrEMBL
Match: U5CXL5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00032p00172780 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-14
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1 

Query: 4   KCQPSTDIYTMLINVYGKVSL-----------------------------NSCAGFPFGA 63
           KC+P+   YT LIN Y + +L                              S AGFP+GA
Sbjct: 255 KCKPNICTYTALINAYAREALCEKAEEIFEALQDAGHEPDVYVYNALMEAYSRAGFPYGA 314

Query: 64  TEIFSLMQYMGCYPDRASYNIMVDAYGRAGLHE 68
            EIFSLMQ+MGC PD+ASYNIMVDAYGRAGLHE
Sbjct: 315 AEIFSLMQHMGCEPDQASYNIMVDAYGRAGLHE 347

[Close]
BLAST of CSPI01G34320 vs. TAIR10
Match: AT2G35130.2 (AT2G35130.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-16
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  Y +      AG+P+GA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 353 EPDVYVYNALMESYSR------AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 407

Query: 66  H 67
           H
Sbjct: 413 H 407

[Close]
BLAST of CSPI01G34320 vs. NCBI nr
Match: gi|700211762|gb|KGN66858.1| (hypothetical protein Csa_1G701340 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60
          MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY
Sbjct: 1  MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60

Query: 61 GRAGLHEG 69
          GRAGLHEG
Sbjct: 61 GRAGLHEG 68

[Close]
BLAST of CSPI01G34320 vs. NCBI nr
Match: gi|659118262|ref|XP_008459029.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 isoform X2 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 7.7e-25
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAG 64
           CQP+TD YTMLINVYGKVSLNS AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAYGRAG
Sbjct: 256 CQPATDTYTMLINVYGKVSLNSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAG 315

Query: 65  LHE 68
           LHE
Sbjct: 316 LHE 318

[Close]
BLAST of CSPI01G34320 vs. NCBI nr
Match: gi|672157100|ref|XP_008798244.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Phoenix dactylifera])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  Y      SCAGFPFG+ EIFSLMQ+MGC PDRASYNIMVDA+GRAGL
Sbjct: 356 EPDVYAYNALMEAY------SCAGFPFGSAEIFSLMQHMGCEPDRASYNIMVDAFGRAGL 411

Query: 66  HE 68
           HE
Sbjct: 416 HE 411

[Close]
BLAST of CSPI01G34320 vs. NCBI nr
Match: gi|703150326|ref|XP_010109831.1| (hypothetical protein L484_018488 [Morus notabilis])

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-14
Identity = 53/127 (41.73%), Postives = 57/127 (44.88%), Query Frame = 1 

Query: 5   CQPSTDIYTMLINVYGKVSLN--------------------------------------- 64
           CQPSTD YTMLIN+YGK S +                                       
Sbjct: 210 CQPSTDTYTMLINLYGKESKSCMSLKLFNEMRSQKCEPNICTYTALVNAFAREGLCEKAE 269

Query: 65  -------------------------SCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 68
                                    S AGFP+GA EIFSLMQ+MGC PDRASYNIMVDAY
Sbjct: 270 EIFEQLQEAGHEPDVYAYNALIEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 329

[Close]
BLAST of CSPI01G34320 vs. NCBI nr
Match: gi|802724980|ref|XP_012085913.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas])

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-14
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 6   QPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  Y +      AGFPFGA EIFSLMQ+MGC PDRASYNIMVDAYGRAGL
Sbjct: 327 EPDVYAYNALMEAYSR------AGFPFGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 382

Query: 66  HE 68
           HE
Sbjct: 387 HE 382

The following BLAST results are available for this feature:
BLAST of CSPI01G34320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP186_ARATH3.2e-1562.30Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN... [more]
BLAST of CSPI01G34320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYJ9_CUCSA1.2e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701340 PE=4 SV=1[more]
W9SSG9_9ROSA2.5e-1441.73Uncharacterized protein OS=Morus notabilis GN=L484_018488 PE=4 SV=1[more]
A0A067K256_JATCU3.3e-1466.13Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1[more]
D7LHS5_ARALL3.3e-1452.50Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata ... [more]
U5CXL5_AMBTC4.3e-1449.46Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00032p00172780 PE=4 SV=... [more]
BLAST of CSPI01G34320 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35130.21.8e-1662.30 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CSPI01G34320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211762|gb|KGN66858.1|1.7e-32100.00hypothetical protein Csa_1G701340 [Cucumis sativus][more]
gi|659118262|ref|XP_008459029.1|7.7e-2588.89PREDICTED: pentatricopeptide repeat-containing protein At2g35130 isoform X2 [Cuc... [more]
gi|672157100|ref|XP_008798244.1|2.1e-1466.13PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Phoenix dactyl... [more]
gi|703150326|ref|XP_010109831.1|3.6e-1441.73hypothetical protein L484_018488 [Morus notabilis][more]
gi|802724980|ref|XP_012085913.1|4.7e-1466.13PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G34320.1CSPI01G34320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 52..67
score:
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 7..67
score: 7.2
NoneNo IPR availablePANTHERPTHR24015:SF421SUBFAMILY NOT NAMEDcoord: 7..67
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G34320Csa1G701340Cucumber (Chinese Long) v2cpicuB001
CSPI01G34320MELO3C021744.2Melon (DHL92) v3.6.1cpimedB022
CSPI01G34320CsaV3_1G046180Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G34320Melon (DHL92) v3.6.1cpimedB013
CSPI01G34320Cucumber (Gy14) v2cgybcpiB002
CSPI01G34320Silver-seed gourdcarcpiB0128
CSPI01G34320Watermelon (97103) v2cpiwmbB011
CSPI01G34320Wax gourdcpiwgoB031
CSPI01G34320Cucumber (Gy14) v1cgycpiB496
CSPI01G34320Cucurbita maxima (Rimu)cmacpiB209
CSPI01G34320Cucurbita maxima (Rimu)cmacpiB404
CSPI01G34320Cucurbita moschata (Rifu)cmocpiB196
CSPI01G34320Cucurbita moschata (Rifu)cmocpiB390
CSPI01G34320Melon (DHL92) v3.5.1cpimeB013
CSPI01G34320Watermelon (Charleston Gray)cpiwcgB026
CSPI01G34320Watermelon (97103) v1cpiwmB045
CSPI01G34320Watermelon (97103) v1cpiwmB053
CSPI01G34320Cucurbita pepo (Zucchini)cpecpiB019
CSPI01G34320Cucurbita pepo (Zucchini)cpecpiB520
CSPI01G34320Bottle gourd (USVL1VR-Ls)cpilsiB034