Csa1G690330 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G690330
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27795572 .. 27796665 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCTCTCTCCTCCCATTTCCCCTCTCTTTCTTCCTCTCTGATCAACCTTCTTCATCTCTTTGCCTTCCTTCCGCAGTCTTCTTCCCTTTCCGACCATTATAATTTAGCACCCTTCAGCTATCCAGCCATCAAAAGCAAGATTATTTTTGTCCTTTCAGAATTTAAGTTTATTATGGAAGTTCTGCATTTGGTTTGAAGAAGGTAATATTTTGTGGAGGACGTTGAAAATAAAAAATCCTTGCCATTAGTCAATTCTCATTTATTGGTTTTTGGATTGAATTTTGGAGCTTCTGCAAGAATAGGTTGCTTCTTTTTTCGCACGGAAAGCTAAGAACGATGCAGGGGTCATCAAAATCTCCAAATTTGCTGCCAGTTATGGATGGGGGTTGAGATGCACTGTGTGGTCTCTTCCATATCTTGTTTGAAAAGTGGAATGACATAAAGCACCCTAAGCCAGAGATTGTGAAAGGGTATGGTGGCTGGATTTCTATTAGAAACTCACCATTGGTTTATTGGAGTGTTGACGATTCCAAAGCTATTGGAGGGTACTTTGGAGGTTTTGAAAGCATCTCCTTAGAAACTACGAATCTGATTAACTGTTTGGAGGCCAAAATAAAGGTCAGCCTAAATCTGTGGGTTTTTGCCAGCTACAGTTGAATTACGAAATACAATTAGGGGCAATATTTTCCTTAATTTCGGGGACATCAAAGCTTTAGAAGCTCCAAAGGCCATTGAAGAAGCTTTTTTCATTAGCAATTTCAACAATCTGATTGATTTACTAAGGTTCAACTAAGTTCCTCAACATACTCGAAACCAGGATTTTCGAGGAACCCTTTTGAAGTCTTGATGGAAAAGGAGGTTTGCAGGGAGTTGGCTTCATCCCATGTTTGCCGGAAATCCCATCCCCAAGTCTCAAAGTTTCCAGAGAAGCACAAAACGGCTATCAGTGACGATGAGGAAATCGAAAGATCAAATTTAATGAAGACTGAGAAAGTTTCGGTCAAGCCAAAACTGTTGCCCAATAAGAAATCAAAGGAAGTTGAGAAGGTCTTCAAGGAGGACAGAGAAAGGAGTAGACAATATAATTAG

mRNA sequence

ATGTTTGCTCTCTCCTCCCATTTCCCCTCTCTTTCTTCCTCTCTGATCAACCTTCTTCATCTCTTTGCCTTCCTTCCGCAGTCTTCTTCCCTTTCCGACCATTATAATTTAGCACCCTTCAGCTATCCAGCCATCAAAAGCAAGATTATTTTTGTCCTTTCAGAATTTAAGTTTATTATGGAAGTTCTGCATTTGGTTCAACTAAGTTCCTCAACATACTCGAAACCAGGATTTTCGAGGAACCCTTTTGAAGTCTTGATGGAAAAGGAGGTTTGCAGGGAGTTGGCTTCATCCCATGTTTGCCGGAAATCCCATCCCCAAGTCTCAAAGTTTCCAGAGAAGCACAAAACGGCTATCAGTGACGATGAGGAAATCGAAAGATCAAATTTAATGAAGACTGAGAAAGTTTCGGTCAAGCCAAAACTGTTGCCCAATAAGAAATCAAAGGAAGTTGAGAAGGTCTTCAAGGAGGACAGAGAAAGGAGTAGACAATATAATTAG

Coding sequence (CDS)

ATGTTTGCTCTCTCCTCCCATTTCCCCTCTCTTTCTTCCTCTCTGATCAACCTTCTTCATCTCTTTGCCTTCCTTCCGCAGTCTTCTTCCCTTTCCGACCATTATAATTTAGCACCCTTCAGCTATCCAGCCATCAAAAGCAAGATTATTTTTGTCCTTTCAGAATTTAAGTTTATTATGGAAGTTCTGCATTTGGTTCAACTAAGTTCCTCAACATACTCGAAACCAGGATTTTCGAGGAACCCTTTTGAAGTCTTGATGGAAAAGGAGGTTTGCAGGGAGTTGGCTTCATCCCATGTTTGCCGGAAATCCCATCCCCAAGTCTCAAAGTTTCCAGAGAAGCACAAAACGGCTATCAGTGACGATGAGGAAATCGAAAGATCAAATTTAATGAAGACTGAGAAAGTTTCGGTCAAGCCAAAACTGTTGCCCAATAAGAAATCAAAGGAAGTTGAGAAGGTCTTCAAGGAGGACAGAGAAAGGAGTAGACAATATAATTAG

Protein sequence

MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIMEVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAISDDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN*
Homology
[Close]
BLAST of Csa1G690330 vs. TrEMBL
Match: A0A0A0M3I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690330 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.5e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 

Query: 1   MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIM 60
           MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIM
Sbjct: 1   MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIM 60

Query: 61  EVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAIS 120
           EVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAIS
Sbjct: 61  EVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAIS 120

Query: 121 DDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN 167
           DDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN
Sbjct: 121 DDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN 166

[Close]
BLAST of Csa1G690330 vs. NCBI nr
Match: gi|700211700|gb|KGN66796.1| (hypothetical protein Csa_1G690330 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.5e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 

Query: 1   MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIM 60
           MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIM
Sbjct: 1   MFALSSHFPSLSSSLINLLHLFAFLPQSSSLSDHYNLAPFSYPAIKSKIIFVLSEFKFIM 60

Query: 61  EVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAIS 120
           EVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAIS
Sbjct: 61  EVLHLVQLSSSTYSKPGFSRNPFEVLMEKEVCRELASSHVCRKSHPQVSKFPEKHKTAIS 120

Query: 121 DDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN 167
           DDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN
Sbjct: 121 DDEEIERSNLMKTEKVSVKPKLLPNKKSKEVEKVFKEDRERSRQYN 166

The following BLAST results are available for this feature:
BLAST of Csa1G690330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M3I8_CUCSA4.5e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690330 PE=4 SV=1[more]
BLAST of Csa1G690330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211700|gb|KGN66796.1|6.5e-87100.00hypothetical protein Csa_1G690330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU176807cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G690330.1Csa1G690330.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU176807CU176807transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G690330CSPI01G33670Wild cucumber (PI 183967)cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G690330Watermelon (97103) v2cuwmbB075
Csa1G690330Watermelon (97103) v2cuwmbB082
Csa1G690330Wax gourdcuwgoB113
Csa1G690330Cucumber (Gy14) v1cgycuB417
Csa1G690330Cucurbita maxima (Rimu)cmacuB064
Csa1G690330Cucurbita maxima (Rimu)cmacuB085
Csa1G690330Cucurbita moschata (Rifu)cmocuB075
Csa1G690330Cucurbita moschata (Rifu)cmocuB054
Csa1G690330Melon (DHL92) v3.5.1cumeB045
Csa1G690330Watermelon (Charleston Gray)cuwcgB077
Csa1G690330Watermelon (Charleston Gray)cuwcgB085
Csa1G690330Watermelon (97103) v1cuwmB090
Csa1G690330Cucurbita pepo (Zucchini)cpecuB639
Csa1G690330Cucurbita pepo (Zucchini)cpecuB701
Csa1G690330Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G690330Bottle gourd (USVL1VR-Ls)culsiB080
Csa1G690330Cucumber (Gy14) v2cgybcuB002
Csa1G690330Melon (DHL92) v3.6.1cumedB037
Csa1G690330Silver-seed gourdcarcuB0016
Csa1G690330Silver-seed gourdcarcuB0927