Csa1G666440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G666440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27075187 .. 27075884 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAACGGGCTCTAAAACAAGGCACAAACATTACATTCCTTAAAAAGGAGGATATGCGGTCTGTAACCCTTTAGTTTGGATTATAATAGTAAAGTATACTATATTTCCTTTCTCAGGGTAATAATCCTTCGTTTCTTTCATGCTTATATTTTTTTTATAGGATTTTGGCGCAATGCCATAGGCTAATAGCTCAGGACCTCTGCTTATTTGAACCTAACGTGGCACACAATGATGAATGGAACATGTAACTTTGAATCGCAGAAGGTGAGCTGGCTGGCTGAAGCTTGGACTAATCTGTACTTGTAGATAGCACAGGATTTAAACCAACTACCATTGCCATTGTCACTGTTTCCAAGAAGATTTTTGGTTGGCCTTTTTATAGAGGTGCATTTTTTCACTAAATCCATGAATTTTGTTGTTAGTGGTTTCTTTTTTCATCTATTTTTTTCTATCATGCATTCGAAGATATCTTCAAGTAATGAAAATAAAACTACTGTACGACTTATGTGCCAACTTCTCGTTATTATTATTATTATTTTAACTGATTGATGATGTGATTTTAAGATTTTAATAACATGAATTTGTGTACTCATTTTATCTAAACCTACACCTAAACCTATCTAATTTGTGTATTGATAGCAGCAGGTTGGTCAAGTTATGGAATTCAAGTTCAGCCCACATGGGTTACATTTGA

mRNA sequence

ATGCTTGAACGGGCTCTAAAACAAGGCACAAACATTACATTCCTTAAAAAGGAGGATATGCGGATTTTGGCGCAATGCCATAGGCTAATAGCTCAGGACCTCTGCTTATTTGAACCTAACGTGGCACACAATGATGAATGGAACATGTTGGTCAAGTTATGGAATTCAAGTTCAGCCCACATGGGTTACATTTGA

Coding sequence (CDS)

ATGCTTGAACGGGCTCTAAAACAAGGCACAAACATTACATTCCTTAAAAAGGAGGATATGCGGATTTTGGCGCAATGCCATAGGCTAATAGCTCAGGACCTCTGCTTATTTGAACCTAACGTGGCACACAATGATGAATGGAACATGTTGGTCAAGTTATGGAATTCAAGTTCAGCCCACATGGGTTACATTTGA

Protein sequence

MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAHMGYI*
Homology
[Close]
BLAST of Csa1G666440 vs. TrEMBL
Match: A0A0A0M0A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666440 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60
          MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH
Sbjct: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60

Query: 61 MGYI 65
          MGYI
Sbjct: 61 MGYI 64

[Close]
BLAST of Csa1G666440 vs. NCBI nr
Match: gi|700211638|gb|KGN66734.1| (hypothetical protein Csa_1G666440 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60
          MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH
Sbjct: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60

Query: 61 MGYI 65
          MGYI
Sbjct: 61 MGYI 64

The following BLAST results are available for this feature:
BLAST of Csa1G666440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0A7_CUCSA1.3e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666440 PE=4 SV=1[more]
BLAST of Csa1G666440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211638|gb|KGN66734.1|1.8e-29100.00hypothetical protein Csa_1G666440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088882cucumber EST collection version 3.0transcribed_cluster
CU133070cucumber EST collection version 3.0transcribed_cluster
CU159071cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G666440.1Csa1G666440.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU133070CU133070transcribed_cluster
CU159071CU159071transcribed_cluster
CU088882CU088882transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G666440CSPI01G32980Wild cucumber (PI 183967)cpicuB001
Csa1G666440CsGy1G031760Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G666440Silver-seed gourdcarcuB0927
Csa1G666440Wax gourdcuwgoB111
Csa1G666440Cucumber (Gy14) v1cgycuB555
Csa1G666440Cucurbita maxima (Rimu)cmacuB064
Csa1G666440Cucurbita maxima (Rimu)cmacuB085
Csa1G666440Cucurbita moschata (Rifu)cmocuB075
Csa1G666440Cucurbita moschata (Rifu)cmocuB054
Csa1G666440Melon (DHL92) v3.5.1cumeB043
Csa1G666440Watermelon (97103) v1cuwmB018
Csa1G666440Cucurbita pepo (Zucchini)cpecuB639
Csa1G666440Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G666440Bottle gourd (USVL1VR-Ls)culsiB081
Csa1G666440Melon (DHL92) v3.6.1cumedB035