Csa1G666440.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G666440.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27075187 .. 27075884 (-)
Sequence length195
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAACGGGCTCTAAAACAAGGCACAAACATTACATTCCTTAAAAAGGAGGATATGCGGTCTGTAACCCTTTAGTTTGGATTATAATAGTAAAGTATACTATATTTCCTTTCTCAGGGTAATAATCCTTCGTTTCTTTCATGCTTATATTTTTTTTATAGGATTTTGGCGCAATGCCATAGGCTAATAGCTCAGGACCTCTGCTTATTTGAACCTAACGTGGCACACAATGATGAATGGAACATGTAACTTTGAATCGCAGAAGGTGAGCTGGCTGGCTGAAGCTTGGACTAATCTGTACTTGTAGATAGCACAGGATTTAAACCAACTACCATTGCCATTGTCACTGTTTCCAAGAAGATTTTTGGTTGGCCTTTTTATAGAGGTGCATTTTTTCACTAAATCCATGAATTTTGTTGTTAGTGGTTTCTTTTTTCATCTATTTTTTTCTATCATGCATTCGAAGATATCTTCAAGTAATGAAAATAAAACTACTGTACGACTTATGTGCCAACTTCTCGTTATTATTATTATTATTTTAACTGATTGATGATGTGATTTTAAGATTTTAATAACATGAATTTGTGTACTCATTTTATCTAAACCTACACCTAAACCTATCTAATTTGTGTATTGATAGCAGCAGGTTGGTCAAGTTATGGAATTCAAGTTCAGCCCACATGGGTTACATTTGA

mRNA sequence

ATGCTTGAACGGGCTCTAAAACAAGGCACAAACATTACATTCCTTAAAAAGGAGGATATGCGGATTTTGGCGCAATGCCATAGGCTAATAGCTCAGGACCTCTGCTTATTTGAACCTAACGTGGCACACAATGATGAATGGAACATGTTGGTCAAGTTATGGAATTCAAGTTCAGCCCACATGGGTTACATTTGA

Coding sequence (CDS)

ATGCTTGAACGGGCTCTAAAACAAGGCACAAACATTACATTCCTTAAAAAGGAGGATATGCGGATTTTGGCGCAATGCCATAGGCTAATAGCTCAGGACCTCTGCTTATTTGAACCTAACGTGGCACACAATGATGAATGGAACATGTTGGTCAAGTTATGGAATTCAAGTTCAGCCCACATGGGTTACATTTGA

Protein sequence

MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAHMGYI*
Homology
[Close]
BLAST of Csa1G666440.1 vs. TrEMBL
Match: A0A0A0M0A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666440 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60
          MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH
Sbjct: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60

Query: 61 MGYI 65
          MGYI
Sbjct: 61 MGYI 64

[Close]
BLAST of Csa1G666440.1 vs. NCBI nr
Match: gi|700211638|gb|KGN66734.1| (hypothetical protein Csa_1G666440 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60
          MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH
Sbjct: 1  MLERALKQGTNITFLKKEDMRILAQCHRLIAQDLCLFEPNVAHNDEWNMLVKLWNSSSAH 60

Query: 61 MGYI 65
          MGYI
Sbjct: 61 MGYI 64

The following BLAST results are available for this feature:
BLAST of Csa1G666440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0A7_CUCSA1.3e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666440 PE=4 SV=1[more]
BLAST of Csa1G666440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211638|gb|KGN66734.1|1.8e-29100.00hypothetical protein Csa_1G666440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G666440Csa1G666440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G666440.1Csa1G666440.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G666440.1.cds3Csa1G666440.1.cds3CDS
Csa1G666440.1.cds2Csa1G666440.1.cds2CDS
Csa1G666440.1.cds1Csa1G666440.1.cds1CDS