Csa1G659060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G659060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationChr1 : 26447897 .. 26448355 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATTTGTGTTAGGAAAAATTTTGACTGGTTTGAAGGTGAAATAATTCAGGGGTGGCTTGAAAAGCATGGTCCTTTTGATGCTGTAATTGATGGTGCCAATGTTGGTCTAGTAAATGAACGTCAGTTCAACTTCATCCAGGTGATATGTATTTTTAATAAATTCATAGACAATAAGTTTCTTGGAGAGATTATTTTTTCTATGTTTGTTCATTAATGTGATTGGTACTGAAATGCTATCTTTCAATTGCAGCTCAAAAGGGCTGTATATCAAATGCGTGAACTGAGCCCTTCAAAAAAGATGCCACTCATAATTTTGCATAAAAGACGCATCACTGACGGTCCTGCACGGAATCCTAATAATATGAAATTAATAGAGACATGGAAAAATTGTGGTGCACTCTATGCTACTCCTTATTCGGTCAATGATGATTGGTATTCATCTTTCTTGCAGTAA

mRNA sequence

ATGTTAATTTGTGTTAGGAAAAATTTTGACTGGTTTGAAGGTGAAATAATTCAGGGGTGGCTTGAAAAGCATGGTCCTTTTGATGCTGTAATTGATGGTGCCAATGTTGGTCTAGTAAATGAACGTCAGTTCAACTTCATCCAGCTCAAAAGGGCTGTATATCAAATGCGTGAACTGAGCCCTTCAAAAAAGATGCCACTCATAATTTTGCATAAAAGACGCATCACTGACGGTCCTGCACGGAATCCTAATAATATGAAATTAATAGAGACATGGAAAAATTGTGGTGCACTCTATGCTACTCCTTATTCGGTCAATGATGATTGGTATTCATCTTTCTTGCAGTAA

Coding sequence (CDS)

ATGTTAATTTGTGTTAGGAAAAATTTTGACTGGTTTGAAGGTGAAATAATTCAGGGGTGGCTTGAAAAGCATGGTCCTTTTGATGCTGTAATTGATGGTGCCAATGTTGGTCTAGTAAATGAACGTCAGTTCAACTTCATCCAGCTCAAAAGGGCTGTATATCAAATGCGTGAACTGAGCCCTTCAAAAAAGATGCCACTCATAATTTTGCATAAAAGACGCATCACTGACGGTCCTGCACGGAATCCTAATAATATGAAATTAATAGAGACATGGAAAAATTGTGGTGCACTCTATGCTACTCCTTATTCGGTCAATGATGATTGGTATTCATCTTTCTTGCAGTAA

Protein sequence

MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ*
Homology
[Close]
BLAST of Csa1G659060 vs. Swiss-Prot
Match: PRRP1_ARATH (Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-32
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1 

Query: 5   VRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKK 64
           V+ NF+ F     Q WLE+HGPFDAVIDGAN+GLVN+R F+F QL   V + +++SPSK+
Sbjct: 377 VKANFNQF-----QEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKR 436

Query: 65  MPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           +PL+ILHK R+  GPA  P N  L+E WKN GALYATP   NDDWY
Sbjct: 437 LPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWY 477

[Close]
BLAST of Csa1G659060 vs. Swiss-Prot
Match: PRRP3_ARATH (Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.0e-19
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 77
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  V ++   S SKK PLI+LHK+
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447

Query: 78  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           R+ +    NPN+  L+E W N   LYATP   NDDWY
Sbjct: 448 RV-NALLENPNHRNLVEEWINNNVLYATPPGSNDDWY 483

[Close]
BLAST of Csa1G659060 vs. Swiss-Prot
Match: PRRP2_ARATH (Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-17
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 77
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  + ++   S + K PLI+LHKR
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388

Query: 78  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           R+      NP +  L+E W + G LYATP   NDDWY
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWY 424

[Close]
BLAST of Csa1G659060 vs. TrEMBL
Match: A0A0A0M056_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659060 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELS 60
           MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELS
Sbjct: 1   MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELS 60

Query: 61  PSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ 116
           PSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ
Sbjct: 61  PSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ 115

[Close]
BLAST of Csa1G659060 vs. TrEMBL
Match: W9RAH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026428 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-32
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 77
           Q WL+ HGPFDAVIDGANVGLVN+  FNF QLK  + Q+RE+SPSK++PL+ILHK R+T 
Sbjct: 389 QEWLQCHGPFDAVIDGANVGLVNQHHFNFFQLKSVLNQLREMSPSKRLPLVILHKNRVTG 448

Query: 78  GPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           GPA+NP N +L+ETWK  GALYATP   NDDWY
Sbjct: 449 GPAQNPKNKQLLETWKKAGALYATPGGSNDDWY 481

[Close]
BLAST of Csa1G659060 vs. TrEMBL
Match: K4C7H9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 5   VRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKK 64
           V+ NF  F     Q WL+KHGPFDAV+DGANVGL+ +R FNF QL+  V ++R++S SKK
Sbjct: 367 VKANFVQF-----QDWLQKHGPFDAVVDGANVGLITQRNFNFSQLRSVVNKLRQMSESKK 426

Query: 65  MPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           +PL+ILHK R T GPA++PNN KL+E+WK  GALYATP+  NDDWY
Sbjct: 427 LPLVILHKSRTTGGPAQHPNNKKLLESWKKAGALYATPHGSNDDWY 467

[Close]
BLAST of Csa1G659060 vs. TrEMBL
Match: M1CGV0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026122 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 5   VRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKK 64
           V+ NF  F     Q WL+KHGPFDAV+DGANVGL+ +R FNF QL+  V ++R++S SKK
Sbjct: 367 VKANFVQF-----QDWLQKHGPFDAVVDGANVGLITQRNFNFSQLRSVVNKLRQMSESKK 426

Query: 65  MPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           +PL+ILHK R T GPA++PNN KL+E+WK  GALYATP+  NDDWY
Sbjct: 427 LPLVILHKSRTTGGPAQHPNNKKLLESWKKAGALYATPHGSNDDWY 467

[Close]
BLAST of Csa1G659060 vs. TrEMBL
Match: A0A0V0IU40_SOLCH (Uncharacterized protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 5   VRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKK 64
           V+ NF  F     Q WL+KHGPFDAV+DGANVGL+ +R FNF QL+  V ++R++S SKK
Sbjct: 313 VKANFVQF-----QDWLQKHGPFDAVVDGANVGLITQRNFNFSQLRSVVNKLRQMSESKK 372

Query: 65  MPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           +PL+ILHK R T GPA++PNN KL+E+WK  GALYATP+  NDDWY
Sbjct: 373 LPLVILHKSRTTGGPAQHPNNKKLLESWKKAGALYATPHGSNDDWY 413

[Close]
BLAST of Csa1G659060 vs. TAIR10
Match: AT2G32230.1 (AT2G32230.1 proteinaceous RNase P 1)

HSP 1 Score: 137.9 bits (346), Expect = 4.0e-33
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1 

Query: 5   VRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKK 64
           V+ NF+ F     Q WLE+HGPFDAVIDGAN+GLVN+R F+F QL   V + +++SPSK+
Sbjct: 377 VKANFNQF-----QEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKR 436

Query: 65  MPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           +PL+ILHK R+  GPA  P N  L+E WKN GALYATP   NDDWY
Sbjct: 437 LPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWY 477

[Close]
BLAST of Csa1G659060 vs. TAIR10
Match: AT4G21900.1 (AT4G21900.1 proteinaceous RNase P 3)

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-20
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 77
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  V ++   S SKK PLI+LHK+
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447

Query: 78  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           R+ +    NPN+  L+E W N   LYATP   NDDWY
Sbjct: 448 RV-NALLENPNHRNLVEEWINNNVLYATPPGSNDDWY 483

[Close]
BLAST of Csa1G659060 vs. TAIR10
Match: AT2G16650.1 (AT2G16650.1 proteinaceous RNase P 2)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-18
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 77
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  + ++   S + K PLI+LHKR
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388

Query: 78  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           R+      NP +  L+E W + G LYATP   NDDWY
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWY 424

[Close]
BLAST of Csa1G659060 vs. NCBI nr
Match: gi|700211588|gb|KGN66684.1| (hypothetical protein Csa_1G659060 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.0e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELS 60
           MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELS
Sbjct: 1   MLICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELS 60

Query: 61  PSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ 116
           PSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ
Sbjct: 61  PSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWYSSFLQ 115

[Close]
BLAST of Csa1G659060 vs. NCBI nr
Match: gi|449449619|ref|XP_004142562.1| (PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 77
           QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD
Sbjct: 396 QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 455

Query: 78  GPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           GPARNPNNMKLIETWKNCGALYATPYSVNDDWY
Sbjct: 456 GPARNPNNMKLIETWKNCGALYATPYSVNDDWY 488

[Close]
BLAST of Csa1G659060 vs. NCBI nr
Match: gi|659085997|ref|XP_008443714.1| (PREDICTED: LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 1 

Query: 5   VRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKK 64
           V+ NF  F     + WLEKHGPFDAVIDGANVG+ N+  F+FIQLKRAVY+MRELSPSKK
Sbjct: 385 VKDNFGKF-----RVWLEKHGPFDAVIDGANVGIENDH-FSFIQLKRAVYRMRELSPSKK 444

Query: 65  MPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           MPLIILH RR+T+GPAR PNNMKLIE WKNCGALYATPY+ NDDWY
Sbjct: 445 MPLIILHTRRVTEGPARYPNNMKLIEIWKNCGALYATPYTSNDDWY 484

[Close]
BLAST of Csa1G659060 vs. NCBI nr
Match: gi|703081032|ref|XP_010091581.1| (hypothetical protein L484_026428 [Morus notabilis])

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-32
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1 

Query: 18  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 77
           Q WL+ HGPFDAVIDGANVGLVN+  FNF QLK  + Q+RE+SPSK++PL+ILHK R+T 
Sbjct: 389 QEWLQCHGPFDAVIDGANVGLVNQHHFNFFQLKSVLNQLREMSPSKRLPLVILHKNRVTG 448

Query: 78  GPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           GPA+NP N +L+ETWK  GALYATP   NDDWY
Sbjct: 449 GPAQNPKNKQLLETWKKAGALYATPGGSNDDWY 481

[Close]
BLAST of Csa1G659060 vs. NCBI nr
Match: gi|720014150|ref|XP_010260407.1| (PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1 

Query: 2   LICVRKNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSP 61
           L C R+    F     Q WL +HGPFDAVIDGANVGL+N+R F+F+QL   V ++R++SP
Sbjct: 387 LACQREAMADFNS--FQEWLLQHGPFDAVIDGANVGLINQRNFSFLQLNSVVNRVRQMSP 446

Query: 62  SKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDDWY 111
           SK++PLI+LH RR+  GPA+NPNN KL+E W+  GALYATPY  NDDWY
Sbjct: 447 SKRLPLIVLHSRRVKGGPAQNPNNKKLLENWRKSGALYATPYGSNDDWY 493

The following BLAST results are available for this feature:
BLAST of Csa1G659060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRRP1_ARATH7.1e-3259.43Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=... [more]
PRRP3_ARATH9.0e-1947.42Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1[more]
PRRP2_ARATH2.9e-1744.33Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1[more]
BLAST of Csa1G659060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M056_CUCSA3.5e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659060 PE=4 SV=1[more]
W9RAH5_9ROSA2.9e-3268.82Uncharacterized protein OS=Morus notabilis GN=L484_026428 PE=4 SV=1[more]
K4C7H9_SOLLC1.1e-3161.32Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1CGV0_SOLTU1.1e-3161.32Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026122 PE=4 SV=1[more]
A0A0V0IU40_SOLCH1.1e-3161.32Uncharacterized protein OS=Solanum chacoense PE=4 SV=1[more]
BLAST of Csa1G659060 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32230.14.0e-3359.43 proteinaceous RNase P 1[more]
AT4G21900.15.1e-2047.42 proteinaceous RNase P 3[more]
AT2G16650.11.6e-1844.33 proteinaceous RNase P 2[more]
BLAST of Csa1G659060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211588|gb|KGN66684.1|5.0e-62100.00hypothetical protein Csa_1G659060 [Cucumis sativus][more]
gi|449449619|ref|XP_004142562.1|2.4e-48100.00PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial [Cucumis sativus... [more]
gi|659085997|ref|XP_008443714.1|2.3e-3876.42PREDICTED: LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochond... [more]
gi|703081032|ref|XP_010091581.1|4.2e-3268.82hypothetical protein L484_026428 [Morus notabilis][more]
gi|720014150|ref|XP_010260407.1|1.2e-3159.63PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0001682 tRNA 5'-leader removal
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
molecular_function GO:0004526 ribonuclease P activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU154727cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G659060.1Csa1G659060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU154727CU154727transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13547UNCHARACTERIZEDcoord: 18..110
score: 1.0
NoneNo IPR availablePANTHERPTHR13547:SF3PROTEINACEOUS RNASE P 1, CHLOROPLASTIC/MITOCHONDRIALcoord: 18..110
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G659060MELO3C010072Melon (DHL92) v3.5.1cumeB043
Csa1G659060CSPI01G32440Wild cucumber (PI 183967)cpicuB001
Csa1G659060CsGy1G031330Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G659060Cucumber (Gy14) v1cgycuB500
Csa1G659060Cucurbita maxima (Rimu)cmacuB057
Csa1G659060Cucurbita maxima (Rimu)cmacuB085
Csa1G659060Cucurbita moschata (Rifu)cmocuB075
Csa1G659060Cucurbita moschata (Rifu)cmocuB047
Csa1G659060Watermelon (Charleston Gray)cuwcgB038
Csa1G659060Watermelon (97103) v1cuwmB011
Csa1G659060Cucurbita pepo (Zucchini)cpecuB000
Csa1G659060Cucurbita pepo (Zucchini)cpecuB349
Csa1G659060Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G659060Bottle gourd (USVL1VR-Ls)culsiB082
Csa1G659060Melon (DHL92) v3.6.1cumedB035
Csa1G659060Silver-seed gourdcarcuB0982
Csa1G659060Watermelon (97103) v2cuwmbB035
Csa1G659060Wax gourdcuwgoB090