CsGy1G031330 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G031330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	proteinaceous RNase P 1, chloroplastic/mitochondrial-like
Location	Chr1 : 30182335 .. 30182751 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATTTTGACTGGTTTGAAGGTGAAATAATTCAGGGGTGGCTTGAAAAGCATGGTCCTTTTGATGCTGTAATTGATGGTGCCAATGTTGGTCTAGTAAATGAACGTCAGTTCAACTTCATCCAGGTGATATGTATTTTTAATAAATTCATAGACAATAAGTTTCTTGGAGAGATTATTTTTTCTATGTTTGTTCATTAATGTGATTGGTACTGAAATGCTATCTTTCAATTGCAGCTCAAAAGGGCTGTATATCAAATGCGTGAACTGAGCCCTTCAAAAAAGATGCCACTCATAATTTTGCATAAAAGACGCATCACTGACGGTCCTGCACGGAATCCTAATAATATGAAATTAATAGAGACATGGAAAAATTGTGGTGCACTCTATGCTACTCCTTATTCGGTCAATGATGAT

mRNA sequence

AAAAATTTTGACTGGTTTGAAGGTGAAATAATTCAGGGGTGGCTTGAAAAGCATGGTCCTTTTGATGCTGTAATTGATGGTGCCAATGTTGGTCTAGTAAATGAACGTCAGTTCAACTTCATCCAGCTCAAAAGGGCTGTATATCAAATGCGTGAACTGAGCCCTTCAAAAAAGATGCCACTCATAATTTTGCATAAAAGACGCATCACTGACGGTCCTGCACGGAATCCTAATAATATGAAATTAATAGAGACATGGAAAAATTGTGGTGCACTCTATGCTACTCCTTATTCGGTCAATGATGAT

Coding sequence (CDS)

AAAAATTTTGACTGGTTTGAAGGTGAAATAATTCAGGGGTGGCTTGAAAAGCATGGTCCTTTTGATGCTGTAATTGATGGTGCCAATGTTGGTCTAGTAAATGAACGTCAGTTCAACTTCATCCAGCTCAAAAGGGCTGTATATCAAATGCGTGAACTGAGCCCTTCAAAAAAGATGCCACTCATAATTTTGCATAAAAGACGCATCACTGACGGTCCTGCACGGAATCCTAATAATATGAAATTAATAGAGACATGGAAAAATTGTGGTGCACTCTATGCTACTCCTTATTCGGTCAATGATGAT

Protein sequence

KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD

Homology

[Close]

BLAST of CsGy1G031330 vs. NCBI nr
Match: KGN66684.1 (hypothetical protein Csa_1G659060 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 2.3e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMP 60
           KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMP
Sbjct: 7   KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMP 66

Query: 61  LIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           LIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD
Sbjct: 67  LIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 108

[Close]

BLAST of CsGy1G031330 vs. NCBI nr
Match: XP_004142562.1 (PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 7.8e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 71
           QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD
Sbjct: 396 QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 455

Query: 72  GPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           GPARNPNNMKLIETWKNCGALYATPYSVNDD
Sbjct: 456 GPARNPNNMKLIETWKNCGALYATPYSVNDD 486

[Close]

BLAST of CsGy1G031330 vs. NCBI nr
Match: XP_022159384.1 (proteinaceous RNase P 1, chloroplastic/mitochondrial-like, partial [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 9   EIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRR 68
           EIIQ WLEKHGPFDAVIDGANVGL N+ QF+FIQLKR VYQMR++SPSK+MPLIILH+ R
Sbjct: 1   EIIQEWLEKHGPFDAVIDGANVGLGNQHQFSFIQLKRVVYQMRQISPSKRMPLIILHRSR 60

Query: 69  ITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           +T GPA+NPNN KLIETWK CGALYATP   NDD
Sbjct: 61  VTGGPAQNPNNKKLIETWKECGALYATPLGSNDD 94

[Close]

BLAST of CsGy1G031330 vs. NCBI nr
Match: XP_008443714.1 (PREDICTED: LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 9.6e-37
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 14  WLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGP 73
           WLEKHGPFDAVIDGANVG+ N+  F+FIQLKRAVY+MRELSPSKKMPLIILH RR+T+GP
Sbjct: 395 WLEKHGPFDAVIDGANVGIEND-HFSFIQLKRAVYRMRELSPSKKMPLIILHTRRVTEGP 454

Query: 74  ARNPNNMKLIETWKNCGALYATPYSVNDD 103
           AR PNNMKLIE WKNCGALYATPY+ NDD
Sbjct: 455 ARYPNNMKLIEIWKNCGALYATPYTSNDD 482

[Close]

BLAST of CsGy1G031330 vs. NCBI nr
Match: XP_022159393.1 (proteinaceous RNase P 1, chloroplastic/mitochondrial-like, partial [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 71
           Q WLEKHGPFDAVIDGANVGL N+ QF+FIQLKR VYQMR++SPSK+MPLIILH+ R+T 
Sbjct: 398 QEWLEKHGPFDAVIDGANVGLGNQHQFSFIQLKRVVYQMRQISPSKRMPLIILHRSRVTG 457

Query: 72  GPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           GPA+NPNN KLIETWK CGALYATP   NDD
Sbjct: 458 GPAQNPNNKKLIETWKECGALYATPLGSNDD 488

[Close]

BLAST of CsGy1G031330 vs. TAIR10
Match: AT2G32230.1 (proteinaceous RNase P 1)

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-31
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 2   NFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPL 61
           NF+ F     Q WLE+HGPFDAVIDGAN+GLVN+R F+F QL   V + +++SPSK++PL
Sbjct: 380 NFNQF-----QEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPL 439

Query: 62  IILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           +ILHK R+  GPA  P N  L+E WKN GALYATP   NDD
Sbjct: 440 VILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDD 475

[Close]

BLAST of CsGy1G031330 vs. TAIR10
Match: AT4G21900.1 (proteinaceous RNase P 3)

HSP 1 Score: 90.1 bits (222), Expect = 8.4e-19
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 71
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  V ++   S SKK PLI+LHK+
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447

Query: 72  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           R+ +    NPN+  L+E W N   LYATP   NDD
Sbjct: 448 RV-NALLENPNHRNLVEEWINNNVLYATPPGSNDD 481

[Close]

BLAST of CsGy1G031330 vs. TAIR10
Match: AT2G16650.1 (proteinaceous RNase P 2)

HSP 1 Score: 84.7 bits (208), Expect = 3.5e-17
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 71
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  + ++   S + K PLI+LHKR
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388

Query: 72  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           R+      NP +  L+E W + G LYATP   NDD
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDD 422

[Close]

BLAST of CsGy1G031330 vs. TAIR10
Match: AT5G60430.1 (drug transmembrane transporters;antiporters)

HSP 1 Score: 42.0 bits (97), Expect = 2.6e-04
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNERQFNFI 42
           Q WLEKHG ++A++DGAN+GL    Q NF+
Sbjct: 85  QDWLEKHGDYEAIVDGANIGLY---QQNFV 111

[Close]

BLAST of CsGy1G031330 vs. Swiss-Prot
Match: sp|Q66GI4|PRRP1_ARATH (Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-30
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 2   NFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPL 61
           NF+ F     Q WLE+HGPFDAVIDGAN+GLVN+R F+F QL   V + +++SPSK++PL
Sbjct: 380 NFNQF-----QEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPL 439

Query: 62  IILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           +ILHK R+  GPA  P N  L+E WKN GALYATP   NDD
Sbjct: 440 VILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDD 475

[Close]

BLAST of CsGy1G031330 vs. Swiss-Prot
Match: sp|F4JKB6|PRRP3_ARATH (Proteinaceous RNase P 3 OS=Arabidopsis thaliana OX=3702 GN=PRORP3 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-17
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 71
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  V ++   S SKK PLI+LHK+
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447

Query: 72  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           R+ +    NPN+  L+E W N   LYATP   NDD
Sbjct: 448 RV-NALLENPNHRNLVEEWINNNVLYATPPGSNDD 481

[Close]

BLAST of CsGy1G031330 vs. Swiss-Prot
Match: sp|Q680B9|PRRP2_ARATH (Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-16
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNER----QFNFIQLKRAVYQMRELSPSKKMPLIILHKR 71
           Q WLEKHG ++A++DGAN+GL  +      F+  QL+  + ++   S + K PLI+LHKR
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388

Query: 72  RITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           R+      NP +  L+E W + G LYATP   NDD
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDD 422

[Close]

BLAST of CsGy1G031330 vs. TrEMBL
Match: tr|A0A0A0M056|A0A0A0M056_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G659060 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMP 60
           KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMP
Sbjct: 7   KNFDWFEGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMP 66

Query: 61  LIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           LIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD
Sbjct: 67  LIILHKRRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 108

[Close]

BLAST of CsGy1G031330 vs. TrEMBL
Match: tr|A0A1S3B8R1|A0A1S3B8R1_CUCME (LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103487238 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.3e-37
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 14  WLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGP 73
           WLEKHGPFDAVIDGANVG+ N+  F+FIQLKRAVY+MRELSPSKKMPLIILH RR+T+GP
Sbjct: 395 WLEKHGPFDAVIDGANVGIEND-HFSFIQLKRAVYRMRELSPSKKMPLIILHTRRVTEGP 454

Query: 74  ARNPNNMKLIETWKNCGALYATPYSVNDD 103
           AR PNNMKLIE WKNCGALYATPY+ NDD
Sbjct: 455 ARYPNNMKLIEIWKNCGALYATPYTSNDD 482

[Close]

BLAST of CsGy1G031330 vs. TrEMBL
Match: tr|A0A2N9G715|A0A2N9G715_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23127 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-31
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 7   EGEIIQGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHK 66
           EGE+IQ WL+K+GPFDAV+DGANVGLV+   F+F QL   V Q+R++SPSK++PLIILHK
Sbjct: 37  EGELIQEWLQKYGPFDAVVDGANVGLVSMHSFSFYQLNSVVKQLRQMSPSKRLPLIILHK 96

Query: 67  RRITDGPARNPNNMKLIETWKNCGALYATPYSVNDD 103
            R+T GPA++PNN KL+E WKN GALYATP   NDD
Sbjct: 97  NRVTGGPAQHPNNKKLLEHWKNSGALYATPPGSNDD 132

[Close]

BLAST of CsGy1G031330 vs. TrEMBL
Match: tr|W9RAH5|W9RAH5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026428 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.9e-31
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 71
           Q WL+ HGPFDAVIDGANVGLVN+  FNF QLK  + Q+RE+SPSK++PL+ILHK R+T 
Sbjct: 389 QEWLQCHGPFDAVIDGANVGLVNQHHFNFFQLKSVLNQLREMSPSKRLPLVILHKNRVTG 448

Query: 72  GPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           GPA+NP N +L+ETWK  GALYATP   NDD
Sbjct: 449 GPAQNPKNKQLLETWKKAGALYATPGGSNDD 479

[Close]

BLAST of CsGy1G031330 vs. TrEMBL
Match: tr|A0A1U8AEY8|A0A1U8AEY8_NELNU (proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104599528 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-30
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 12  QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 71
           Q WL +HGPFDAVIDGANVGL+N+R F+F+QL   V ++R++SPSK++PLI+LH RR+  
Sbjct: 401 QEWLLQHGPFDAVIDGANVGLINQRNFSFLQLNSVVNRVRQMSPSKRLPLIVLHSRRVKG 460

Query: 72  GPARNPNNMKLIETWKNCGALYATPYSVNDD 103
           GPA+NPNN KL+E W+  GALYATPY  NDD
Sbjct: 461 GPAQNPNNKKLLENWRKSGALYATPYGSNDD 491

The following BLAST results are available for this feature:

BLAST of CsGy1G031330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66684.1	2.3e-54	100.00	hypothetical protein Csa_1G659060 [Cucumis sativus]	[more]
XP_004142562.1	7.8e-47	100.00	PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial [Cucumis sativus...	[more]
XP_022159384.1	6.6e-38	79.79	proteinaceous RNase P 1, chloroplastic/mitochondrial-like, partial [Momordica ch...	[more]
XP_008443714.1	9.6e-37	84.27	PREDICTED: LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochond...	[more]
XP_022159393.1	2.8e-36	79.12	proteinaceous RNase P 1, chloroplastic/mitochondrial-like, partial [Momordica ch...	[more]

BLAST of CsGy1G031330 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32230.1	3.3e-31	59.41	proteinaceous RNase P 1	[more]
AT4G21900.1	8.4e-19	46.32	proteinaceous RNase P 3	[more]
AT2G16650.1	3.5e-17	43.16	proteinaceous RNase P 2	[more]
AT5G60430.1	2.6e-04	56.67	drug transmembrane transporters;antiporters	[more]

BLAST of CsGy1G031330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q66GI4\|PRRP1_ARATH	5.9e-30	59.41	Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=...	[more]
sp\|F4JKB6\|PRRP3_ARATH	1.5e-17	46.32	Proteinaceous RNase P 3 OS=Arabidopsis thaliana OX=3702 GN=PRORP3 PE=1 SV=1	[more]
sp\|Q680B9\|PRRP2_ARATH	6.4e-16	43.16	Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1	[more]

BLAST of CsGy1G031330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M056\|A0A0A0M056_CUCSA	1.5e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G659060 PE=4 SV=1	[more]
tr\|A0A1S3B8R1\|A0A1S3B8R1_CUCME	6.3e-37	84.27	LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochondrial-like O...	[more]
tr\|A0A2N9G715\|A0A2N9G715_FAGSY	1.0e-31	66.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23127 PE=4 SV=1	[more]
tr\|W9RAH5\|W9RAH5_9ROSA	8.9e-31	68.13	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026428 PE=4 SV=1	[more]
tr\|A0A1U8AEY8\|A0A1U8AEY8_NELNU	3.4e-30	64.84	proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 OS=Nelumbo ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR031595	PRORP_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004526	ribonuclease P activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G031330.1	CsGy1G031330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031595	Protein-only RNase P, C-terminal	PFAM	PF16953	PRORP	coord: 11..102 e-value: 3.5E-17 score: 62.6
None	No IPR available	GENE3D	G3DSA:3.40.50.11980		coord: 11..102 e-value: 2.3E-34 score: 120.6
None	No IPR available	PANTHER	PTHR13547	UNCHARACTERIZED	coord: 12..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G031330	Csa1G659060	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G031330	MELO3C010072	Melon (DHL92) v3.5.1	cgybmeB040
CsGy1G031330	CSPI01G32440	Wild cucumber (PI 183967)	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G031330	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G031330	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G031330	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G031330	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G031330	Cucurbita pepo (Zucchini)	cgybcpeB002
CsGy1G031330	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G031330	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G031330	Bottle gourd (USVL1VR-Ls)	cgyblsiB076
CsGy1G031330	Melon (DHL92) v3.6.1	cgybmedB034
CsGy1G031330	Watermelon (Charleston Gray)	cgybwcgB036
CsGy1G031330	Watermelon (97103) v1	cgybwmB013
CsGy1G031330	Silver-seed gourd	carcgybB0955
CsGy1G031330	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G031330	Watermelon (97103) v2	cgybwmbB035
CsGy1G031330	Wax gourd	cgybwgoB086