Csa1G654850 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G654850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 26138384 .. 26138884 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACTAGGCCAAAGTAGAAGTTAAATGTTAAGTTCGGGGCATTTTGGTCATTTCTCATTATTATTATTAATTTCTTCTTCTTCTTTCCTTTCAGTGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

mRNA sequence

ATGGAAAAACTAGGCCAAAGTAGAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

Coding sequence (CDS)

ATGGAAAAACTAGGCCAAAGTAGAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

Protein sequence

MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRNTRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPATLTPSHHSSLFWSCIAISLALF*
Homology
[Close]
BLAST of Csa1G654850 vs. TrEMBL
Match: A0A0A0M357_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654850 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.4e-74
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHSSLFWSCIAISLALF 142
           LTPSHHSSLFWSCIAISLALF
Sbjct: 121 LTPSHHSSLFWSCIAISLALF 141

[Close]
BLAST of Csa1G654850 vs. NCBI nr
Match: gi|700211560|gb|KGN66656.1| (hypothetical protein Csa_1G654850 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHSSLFWSCIAISLALF 142
           LTPSHHSSLFWSCIAISLALF
Sbjct: 121 LTPSHHSSLFWSCIAISLALF 141

The following BLAST results are available for this feature:
BLAST of Csa1G654850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M357_CUCSA8.4e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654850 PE=4 SV=1[more]
BLAST of Csa1G654850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211560|gb|KGN66656.1|1.2e-73100.00hypothetical protein Csa_1G654850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G654850.1Csa1G654850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G654850CSPI01G32170Wild cucumber (PI 183967)cpicuB001
Csa1G654850CsGy1G031110Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G654850Melon (DHL92) v3.6.1cumedB035
Csa1G654850Silver-seed gourdcarcuB0565
Csa1G654850Silver-seed gourdcarcuB0982
Csa1G654850Watermelon (97103) v2cuwmbB035
Csa1G654850Wax gourdcuwgoB090
Csa1G654850Wax gourdcuwgoB110
Csa1G654850Cucumber (Gy14) v1cgycuB500
Csa1G654850Cucurbita maxima (Rimu)cmacuB057
Csa1G654850Cucurbita maxima (Rimu)cmacuB085
Csa1G654850Cucurbita moschata (Rifu)cmocuB075
Csa1G654850Cucurbita moschata (Rifu)cmocuB047
Csa1G654850Melon (DHL92) v3.5.1cumeB043
Csa1G654850Watermelon (Charleston Gray)cuwcgB038
Csa1G654850Watermelon (97103) v1cuwmB011
Csa1G654850Cucurbita pepo (Zucchini)cpecuB000
Csa1G654850Cucurbita pepo (Zucchini)cpecuB349
Csa1G654850Bottle gourd (USVL1VR-Ls)culsiB058