Csa1G654850.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G654850.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 26138384 .. 26138884 (-)
Sequence length426
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACTAGGCCAAAGTAGAAGTTAAATGTTAAGTTCGGGGCATTTTGGTCATTTCTCATTATTATTATTAATTTCTTCTTCTTCTTTCCTTTCAGTGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

mRNA sequence

ATGGAAAAACTAGGCCAAAGTAGAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

Coding sequence (CDS)

ATGGAAAAACTAGGCCAAAGTAGAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

Protein sequence

MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRNTRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPATLTPSHHSSLFWSCIAISLALF*
Homology
[Close]
BLAST of Csa1G654850.1 vs. TrEMBL
Match: A0A0A0M357_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654850 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.4e-74
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHSSLFWSCIAISLALF 142
           LTPSHHSSLFWSCIAISLALF
Sbjct: 121 LTPSHHSSLFWSCIAISLALF 141

[Close]
BLAST of Csa1G654850.1 vs. NCBI nr
Match: gi|700211560|gb|KGN66656.1| (hypothetical protein Csa_1G654850 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHSSLFWSCIAISLALF 142
           LTPSHHSSLFWSCIAISLALF
Sbjct: 121 LTPSHHSSLFWSCIAISLALF 141

The following BLAST results are available for this feature:
BLAST of Csa1G654850.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M357_CUCSA8.4e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654850 PE=4 SV=1[more]
BLAST of Csa1G654850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211560|gb|KGN66656.1|1.2e-73100.00hypothetical protein Csa_1G654850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G654850Csa1G654850gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G654850.1Csa1G654850.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G654850.1.cds2Csa1G654850.1.cds2CDS
Csa1G654850.1.cds1Csa1G654850.1.cds1CDS