CsGy1G031110 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G031110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 29869011 .. 29875294 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTAGGCCAAAGTAGAAGTTAAATGTTAAGTTCGGGGCATTTTGGTCATTTCTCATTATTATTATTAATTTCTTCTTCTTCTTTCCTTTCAGTGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTATTTTTTGACCATTTCACCTCAAATTTTAGATTAGGAGTAAGTTTCATTGTTTTACTTGGATTTTTTTTTTTAGATTTTCGAATACCCATTAAAATTTTGATTGAATTAAACATTACCCATAACGTTTTAATGCTAGATTTGAGTTTTAGAAGAGTTTGAGATGCTGCCCAGCCACTCAAAAGCTCGAATTTAGGCGTTTCGGCACCACTTGGGTAAGGTTCAAAGTTTTGGGGTTGACCTTGAGTACCCATCTAATCCTCGTGATAGTATTGGTGTAATCTGGGATGGTGTATGCTTGTTTGTGAATTTAGAAAGTGGTTAGGATGTTTTCCATTGAAGTTAAAGTTACTTTGCTAAGTTCTTGTTGAGGGTCAGAGTGATTTAAGTGTGTTTTCTTCAAGTTCACAAGTGGCTATTGAGTCTAAGTGTTAAGATTAAATTACCCATAGTACTCGGGTTCTAAAGATAAATGTTAGAGGTTGAAATTGAGTTTTTCTTTAACTTGGAGTATGTTTGGGTGTTTACTTCTATGAAGTTCGAATTATAAAATGAATTTTGGTGATTTTAGGAAGTGTTTGAGTTGTTTGACTCATAGTAATATATTGAGTATAAATCCCAAGCATCATCAATAATGGAGGTAAAAGTGTATCTATATAAAAGAATCGTTGAGTTTTGAACTAAGTTAGGTTTGAGTTAAGTATCTAGATTTCGAGCCCAAGGGTTCGTATGTGGAAAGTTTAGTCTAATCCTAAGCGCTTTGTAAATTCAAAGACCTTAGAAGCATCAAATATATTTTGGTGACCTTGTGAAGTATTTTACATATAGTTGTAGCATCATGTCTTATGAAGATAACTAAGAGACCTTGATCGTTGTTTCAAGCCAATTTATTGTGGGGAAAGCGTATAACCTCGGGGGATTGAGTTATTGATTGTGAGTGGCTCATTTTTAAGTTTTCTTTGAATTTGTACATGTCATTTTATGATATCACTTGAAAACTACCATGACTTAAACTTTTTATGACTATGTGTTTCATTTATACTTAAGCAATGTGTTTACACTCATCAAAATTTTAAGAATGTGTATGGCTTGAACTTTATAAAAACGTGATATAAAGTTTCTGATTGTACTTGTTTTTTTTAAATATGATTGATCGATATGTTTATGATGAACGAGAAGGTGATTTCCCTGAGGCTATGTGAATGTCTTTTCCATAGCACCACCTACGTTGTTAGGGGGTTCCGAAGCAAAAAGAGGTTGTGATCGGAGATCCAAGAACCTGAGCCTTGATGTGGATATGGATGGAGGATTGAGATATGGCTTCAAGCCTAATTTAACACTATGAGCGAATGTGTAGATTGTTACTGTGGTGGGTACTAAGTATGGATGAGCTCAGTTTGGCAGCGTGTGTTCTTGTGGATATGAATCACGTGTGAGCTATTCTCGATCGTTATTAATAAAGTGTTATTATTGTAATTTCAGTAAATGTTATTGATTATATTTTTAGTTTTGTCTAAATAAACCAAATTCAATAAACTAACATTCTAAGTTGTTTGGTAAGTCATGAACAATATGTAGAGACATAAAGTGATTAATGTTTGAGATCAGCTTAAAGGGTCTATAGTATAGGGATAATGTTAGGCACCTTATTCTAGTAACACTATGAATACAACTCACTTTTGTATTTGCTACAAACACAATGATTCAAAGTGTTTGTGAATGTGACATGCGAGTGAGGGTATCTTATATAATAAGTTTGCATGAGACCAAACCACAAAATAGTAACCACTAGATGTAACTTTGTTAACTAGTTAGGTTTCTATTTCATTAGGATGACCTAGGTAACTTAGTTTTAACCCTGAGTGTATTATGAACTCCCGTTAGTGAGGAATTGTCCTTTGATTTGTACGGGTGGGAGTGGCCAGATTGTGGACTCAATATGATTTTCATTTTGGAGACAAGATTGAGTGGAGAGTTGGAAACATAATCACACAAGATGGAATTCACTCATTTCCGACTATAGGGTAAGTAGATGAGTGTTCCCTTAAATGGTGTCTTCGAGACTTGAACAAAGGGTTCTACCCTCTCTATGACACGAGAGGAGTTTCTATTTATTGGTGGACCATAAACATGTTGTTCATTCGAGGAGCACTAGTATTTAAAGGACTAGAGGTAATCTCAGGATAAAATGGTAATTTTAGCTAGTTGGTGTTACAAACATTCTTGAAGGATTAACTTGATATTATAATGTAAGTAAAAATCTGGAGGTCATTTGTTTAAGTCCCGGAGACACCATTTAAGAGAACATTCATCTACTTACCCTAAAGTAGGGAAAAAGTGAATTTCATCTTGTGTAATTATGTTTTTAGCTCCCCACTCAGTCTTATCCTCAAAATGATAAGCTTATTGGGTCAGCGATCTGACCACTTTCACTCATACAAATCAAAGGATAATCTCTCACGAACAAGAGCTTATAATACACTTAGGATGAAGACTAAGTTACCTAGCTCATCCTAATGAAACAGAAACCTAACTAGTTAACGGAGTTACATCTAGTAGTTACTATTTTGTGGTCTGGTCTTATGCAAACTCATTGCATAGGATACCCTCACTCGTATGTCAACTACACGAACGCGTTAGATCATTGCATTTGTATCAAATACAAAGTGAGTTGTATCCATAGTGTTATCAAGATAAGGTACTCAGCCTTATCCCTATAATGTAGACTGTTTAAGCTAATTTTGAACATTGATTCATGTATGTCTCTACATACTGTTTCAGATTCATCAAACAACTTAGGATGTTAGTTTATTGGATTTAGGTTATTAAGAAAAAACTAATAATATAATCAATAATATTTATTGAAATTACAACAATAACACTTTATTAACAACGATCAATGGATTATATTTACAGTCTACGAGTTTTAGGACATAAATTCCAACACTATTCTCATCACTTAGTCGGTGCATGTCGTCAACTACCCAAGAGGGCAAGTAGCAAGGACAAGACTAATGCACAAGGATGAGTTTGGCGATAAACTCCTCCTTGGTGAGAGGACTCACATTACTTGTATCCTGAAAGGTGAGCAAGTGTGGACATGTGGTGTCGAGAGGTTCCCGTTCTTAACGTGGGGCGCTATAAGTAGTATAAATGACCACTTCTAGAATTATATCACTTTGTTAAGTTAGTCACATGGATCCTGACAGGCAATCATGTAAAGGTGTTTAATGACTCTAAAAGGAGCACGCCTTAATCATAAGATAAATAAGTAAATATATTTCGCATCAACACTATCACATGGTCAATTATATAATAGTGCATAGACTTTCCTTCACCTTCGTATCACATACAAGTTAGTTCACACATTTATCTTGCATTCATTTCCACCCATTATAGGTTCTCTAGGCATATTTAAGTAATGTTATTTCCAGTTACTTTTAGATGTTAATTGTTTATTCTTTTATACCGCATAATTGAGAAGTAGATCATAAAACTAAGTTTTGATATCAATTCTCTCTGTTCAACCTTGGTTCAATTAGGAAAACATGTTTTACTTATACTTGGGCAAGCAGCAGGAAAGCTTATACGCGATACAAACTTAGTAATCATGATAAAGAGGAACATAGTGAGTACTTCGTATACAATGATCATGGCCAATGACTTAGGGCATAGAACTAATCATGCTTATATACATAGAAACCTAAGTCTTAACGCTTTCTCCTTATCGTGCAACATCCAGGTTTAGGTTTGTTGGTTTGTTGGTTTGACTGGTGGTTATGTGATGATGACGTTTCAACTAGTATTTCATTATTGATGCATATTTACACATGTTCTTTTTTAGCATGTTTTACAAGTTTTTACTTCTAAGAACTTGCCACTCACTGAATTTTTAGCTTACGTTTTCAATGTTTTCTACCCTCCAGCACCCCCACATCAGGTAGTGATCAAGGGCCAAACGTTGTAGACCTTCATTTTGTATGGATATAGTTAACTTTTGCATTGCATCATGAGGTAGTTAAATGTAACAAGAGTGACGCTAAGGACTTGTATTTTGAGAGATCCCTCATTAGACTAAAATTATTTTGTATGTAATATTTAGTTTGAATTTTAACTCTCCTTGAAACTTTGAAATTTTCCGGATGTGTGTGGTGAGACACTTGTTGTGTTGGGAGATCTAAAGTATCAATTTACATACATATAGAAGTTAAAAATCTCTTCCTTTTCAGGTTTGGGCTAACCCATAATTTAGGAGAGATGCTGTCAAAATTTCTATATAAATTCATAATATGCGTTCCATAGAAGTTAAGTTAGAAAAAGTTGTTTTAAAAAGTGTTTTTTCATGCCACGATCTAGATTAAAGAGGAAAACCTAGAATGGGGTGTGACAAAATATAAAATTTGGCCACTGTTTTCTAAACAGGTGTTATGAAGTGCTAACACTCTCCCCATATACAAATGACACCAAAGCTCAACTCTAGCTTTTTTCGTAGGTTATTTTTATTAAGTTTATTAAAACAATATTTACTTTATTATGACGTCTAATCACATCGTAAAAAGGATTGATGGTGATTTCTTACTTGTTTTATTTTAAAATTTACCATTTTTCAACGACGTCGACTATTCCACACCATCTCGGGACACGTGGTGACAAGTTAAGCTATGCTCATTACTCATGATACCCTATAAAATAAGTTAATAATATAAAGTTTTCAAACAATATAATGGTTTGAAATTTATGTGATCAAATAGGTCAATGAAAAACAACCCAACAAAAACATTGAAAATATAATCAAATTAAAGGAAGACATTTAGATATATGTGACATAGAAAATTGAATGACTTAAAAGGAAACTTTTGCACGTACAGTACCCTATATCAGAAAAAAGAAAAATTCTTGCATGCATCTTCGGTTGCTTATCAATCTTACATTTTACCGATACAATCTTGTTTGCACCCGAGTATTATTCTTATTATTTAAACATGCAACACACTGTAAAACTTTTGTTGAAAAGGCTTTTGAATTAGGGTAAAGGTACGTTGTATAAAACCTCAATCCCTTCAATGTCATCAGCATTCAAGCCTTTAGTAGACCCAGATTCTATAGTAGGATACATTATAGCATTTTTAACTCTGCTATGCCCAAGTCCAAGAAGATGTCCAATCTCATGCAAAGCCACTGTTTCCAAATCAAATCTCCCTCTTACTGCCCCAACTACCCATTTCTCTGTTGAATCAAAATGAACTCTCCCATCAGTTGGAGTAAAAGCATGTGCCAAAGTTCCTCCTGACCCGTCAAATGGGTACCCATCTCCATGGTTCCCTCTATAAAACCCTATCTTCAAATCAGCTCTTCTAGAGTTTGTGGCCAAAGAAAACTTAAAATGTGTGTGTCGAGCCCATGTTGCGAACGCTCGTGTCACCGGTGCTTTTGCGTCTGCATGAGTGTTGGGAAGAAACTCATATGTTAAGTGATATTTGGTAGGTGGCCACCTAGGCCTTCCTGGGAAGAAACTGTAGTGTGGTACAGCATGGGAGAGTTGGTGGTAGTGATCGTGACTACTATCGTTGTTGTTGTTTTCTAATAGCATTCGACCAGTGGCTTCATTAAGGATATCTGGATTACCGCACCGAGGTGTTGCAAGTTGGGATAGCGTCTCGGCATTCAGAGATCCAGTGGAGTTTAGATGGAAGTATTGTTGGTAGGTTTTGACGGCAGACTCGAAGCGATCGTCAAAGGTGTCGTCGGCATCATGGTCGATCAAATGACCAGTGACATTGATTTGATGATTTAA

mRNA sequence

ATGGAAAAACTAGGCCAAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCCATTCGACCAGTGGCTTCATTAAGGATATCTGGATTACCGCACCGAGGTGTTGCAAGTTGGGATAGCGTCTCGGCATTCAGAGATCCAGTGGAGTTTAGATGGAAACTCGAAGCGATCGTCAAAGGTGTCGTCGGCATCATGGTCGATCAAATGACCAGTGACATTGATTTGATGATTTAA

Coding sequence (CDS)

ATGGAAAAACTAGGCCAAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCCATTCGACCAGTGGCTTCATTAAGGATATCTGGATTACCGCACCGAGGTGTTGCAAGTTGGGATAGCGTCTCGGCATTCAGAGATCCAGTGGAGTTTAGATGGAAACTCGAAGCGATCGTCAAAGGTGTCGTCGGCATCATGGTCGATCAAATGACCAGTGACATTGATTTGATGATTTAA

Protein sequence

MEKLGQMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRNTRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPATLTPSHHSIRPVASLRISGLPHRGVASWDSVSAFRDPVEFRWKLEAIVKGVVGIMVDQMTSDIDLMI

Homology

[Close]

BLAST of CsGy1G031110 vs. NCBI nr
Match: KGN66656.1 (hypothetical protein Csa_1G654850 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 2.9e-60
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MEKLGQ--MSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQ  MSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHS 126
           LTPSHHS
Sbjct: 121 LTPSHHS 127

[Close]

BLAST of CsGy1G031110 vs. TrEMBL
Match: tr|A0A0A0M357|A0A0A0M357_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654850 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-60
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MEKLGQ--MSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQ  MSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHS 126
           LTPSHHS
Sbjct: 121 LTPSHHS 127

The following BLAST results are available for this feature:

BLAST of CsGy1G031110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66656.1	2.9e-60	98.43	hypothetical protein Csa_1G654850 [Cucumis sativus]	[more]

BLAST of CsGy1G031110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G031110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G031110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M357\|A0A0A0M357_CUCSA	1.9e-60	98.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654850 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G031110.1	CsGy1G031110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G031110	Csa1G654850	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G031110	CSPI01G32170	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G031110	CsaV3_1G044390	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G031110	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G031110	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G031110	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G031110	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G031110	Cucurbita pepo (Zucchini)	cgybcpeB002
CsGy1G031110	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G031110	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G031110	Melon (DHL92) v3.5.1	cgybmeB040
CsGy1G031110	Melon (DHL92) v3.6.1	cgybmedB034
CsGy1G031110	Watermelon (Charleston Gray)	cgybwcgB036
CsGy1G031110	Watermelon (97103) v1	cgybwmB013
CsGy1G031110	Silver-seed gourd	carcgybB0542
CsGy1G031110	Silver-seed gourd	carcgybB0955
CsGy1G031110	Watermelon (97103) v2	cgybwmbB035
CsGy1G031110	Wax gourd	cgybwgoB086
CsGy1G031110	Wax gourd	cgybwgoB103