CsaV3_1G044390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G044390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 29730274 .. 29734984 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACTAGGCCAAAGTAGAAGTTAAATGTTAAGTTCGGGGCATTTTGGTCATTTCTCATTATTATTATTAATTTCTTCTTCTTCTTTCCTTTCAGTGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGACCATTTCACCTCAAATTTTAGATTAGGAGTAAGTTTCATTGTTTTACTTGGATTTTTTTTTTAGATTTTCGAATACCCATTAAAATTTTGATTGAATTACACATTACCCATAACGTTTTAATGCTAGATTTGAGTTTTAGAAGAGTTTGAGATGCTGCCCAGCCACTCAAAAGCTCGAATTTAGGCGTTTCGGCACCACTTGGGTAAGGTTCAAAGTTTTGGGGTTGACCTTGAGTACCCATCTAATCCTCGTGATAGTATTGGTGTAATCTGGGATGGTGTATGCTTGTTTGTGAATTTAGAAAGTGGTTAGGATGTTTTCCATTGAAGTTAAAGTTACTTTGCTAAGTTCTTGTTGAGGGTCAGAGTGATTTAAGTGTGTTTTCTTCAAGTTCACAAGTGGCTATTGAGTCTAAGTGTTAAGATTAAATTACCCATAGTACTCGGGTTCTAAAGATAAATGTTAGAGGTTGAAATTGAGTTTTTCTTTAACTTGGAGTATGCTTGGGTGTTTACTTCTATGAAGTTCGAATTATAAAATGAATTTTGGTGATTTTAGGAAGTGTTTGAGTTGTTTGACTCATAGTAATATATTGAGTATAAATCCCAAGCATCATCAATAATGGAGGTAAAAGTGTATCTATATAAAAGAATCGTTGAGTTTTGAACTAAGTTAGGTTTGAGTTAAGTATCTAGATTTCGAGCCCAAGGGTTCGTATGTGGAAAGTTTAGTCTAATCCTAAGCGCTTTGTAAATTCAAAGACCTTAGAAGCATCAAATATATTTTGGTGACCTTGTGAAGTATTTTACATATAGTTGTAGCATCATGTCTTATGAAGATAACTAAGAGACCTTGATCGTTGTTTCAAGCCAATTTATTGTGGGGAAAGCGTATAACCTCGGGGGATTGAGTTATTGATTGTGAGTGGCTCATTTTTAAGTTTTCTTTGAATTTGTACATGTCATTTTATGATATCACTTGAAAACTACCATGACTTAAACTTTTTATGACTATGTGTTTCATTTATACTTAAGCAATGTGTTTACACTCATCAAAATTTTAAGAATGTGTATGGCTTGAACTTTATAAAAACGTGATATAAAGTTTCTGATTGTACTTGTTTTTTTTAAATATGATTGATCGATATGTTTATGATGAACGAGAAGGTGATTTCCCTGAGGCTATGTGAATGTCTTTTCCATAGCACCACCTACGTTGTTAGGGGGTTCCGAAGCAAAAAGAGGTTGTGATCGGAGATCCAAGAACCTGAGCCTTGATGTGGATATGGATGGAGGATTGAGATATGGCTTCAAGCCTAATTTAACACTATGAGCGAATGTGTAGATTGTTACTGTGGTGGGTACTAAGTATGGATGAGCTCAGTTTGGCAGCGTGTGTTCTTGTGGATATGAATCACGTGTGAGCTATTCTCGATCGTTATTAATAAAGTGTTATTATTGTAATTTCAGTAAATGTTATTGATTATATTTTTAGTTTTGTCTAAATAAACCAAATCCAATAAACTAACATTCTAAGTTGTTTGGTAAGTCATGAACAATATGTAGAGACATAAAGTGATTAATGTTTGAGATCAGCTTAAAGGGTCTATAGTATAGGGATAATGTTAGGCACCTTATTCTAGTAACACTATGAATACAACTCACTTTTGTATTTGCTACAAACACAATGATTCAAAGTGTTTGTGAATGTGACATGCGAGTGAGGGTATCTTATATAATAAGTTTGCATGAGACCAAACCACAAAATAGTAACCACTAGATGTAACTTTGTTAACTAGTTAGGTTTCTATTTCATTAGGATGACCTAGGTAACTTAGTTTTAACCCTGAGTGTATTATGAACTCCCGTTAGTGAGGAATTGTCCTTTGATTTGTACGGGTGGGAGTGGCCAGATTGTGGACTCAATATGATTTTCATTTTGGAGACAAGATCGAGTGGAGAGTTGGAAACATAATCACACAAGATGGAATTCACTCATTTCCGACTATAGGGTAAGTAGATGAGTGTTCCCTTAAATGGTGTCTTCGAGACTTGAACAAAGGGTTCTACCCTCTCTATGACACGAGAGGAGTTTCTATTTATTAGTGGACCATAAACATGTTGTTCATTCGAGGAGCACTAGTATTTAAAGGATTAGAGGTAATCTCAGGATAAAATGGTAATTTTAGCTAGTTGGTGTTACAAACATTCTTGAAGGATTAACTTGATATTATAATGTAAGTAAAAATCTGGAGGTCATTTGTTTAAGTCCCGGAGACACCATTTAAGAGAACATTCATCTACTTACCCTAAAGTAGGGAAAAAGTGAATTTCATCTTGTGTAATTATGTTTTTAGCTCCCCACTCAGTCTTATCCTCAAAATGATAAGCTTATTGGGTCAGCGATCTGGCCACTTTCACTCATACAAATCAAAGGATAATCTCTCACGAACAAGAGCTTATAATACACTTAGGATGAAGACTAAGTTACCTAGCTCATCCTAATGAAACAGAAACCTAACTAGTTAACGGAGTTACATCTAGTAGTTACTATTTTGTGGTCTGGTCTTATGCAAACTCATTGCATAGGATACCCTCACTCGTATGTCAACTACACGAACGCGTTAGATCATTGCATTTGTATCAAATACAAAGTGAGTTGTATCCATAGTGTTATCAAGATAAGGTACTCAGCCTTATCCCTATAATGTAGACTGTTTAAGCTAATTTTGAACATTGATTCATGTATGTCTCTACATACTGTTTCAGATTCATCAAACAACTTAGGATGTTAGTTTATTGGATTTAGGTTATTAAGAAAAAACTAATAATATAATCAATAATATTTATTGAAATTACAACAATAACACTTTATTAACAACGATCAATGGATTATATTTACAGTCTACGAGTTTTAGGACATAAATTCCAACACTATTCTCATCACTTAGTCGGTGCATGTCGTCAACTACCCAAGAGGGCAAGTAGCAAGGACAAGACTAATGCACAAGGATGAGTTTGGCGATAAACTCCTCCTTGGTGAGAGGACTCACATTACTTGTATCCTGAAAGGTGAGCAAGTGTGGACATGTGGTGTCGAGAGGTTCCCGTTCTTAACGTGGGGCGCTATAAGTAGTATAAATGACCACTTCTAGAATTATATCACTTTGTTAAGTTAGTCACATGGATCCTGACAGGCAATCATGTAAAGGTGTTTAATGACTCTAAAAGGAGCACGCCTTAATCATAAGATAAATAAGTAAATATATTTCGCATCAACACTATCACATGGTCAATTATATAATAGTGCATAGACTTTCCTTCACCTTCGTATCACATACAAGTTAGTTCACACATTTATCTTGCATTCATTTCCACCCATTATAGGTTCTCTAGGCATATTTAAGTAATGTTATTTCCAGTTACTTTTAGATGTTAATTGTTTATTCTTTTATACCGCATAATTGAGAAGTAGATCATAAAACTAAGTTTTGATATCAATTCTCTCTGTTCAACCTTGGTTCAATTAGGAAAACATGTTTTACTTATACTTGGGCAAGCAGCAGGAAAGCTTATACGCGATACAAACTTAGTAATCATGATAAAGAGGAACATAGTGAGTACTTCGTATACAATGATCATGGCCAATGACTTAGGGCATAGAACTAATCATGCTTATATACATAGAAACCTAAGTCTTAACGCTTTCTCCTTATCGTGCAACATCCAGCTTTAGGTTTGTTGGTTTGTTGGTTTGACTGGTGGTTATGTGATGATGACGTTTCAACTAGTATTTCATTATTGATGCATATTTACACATGTTCTTTTTTAGCATGTTTTACAAGTTTTTACTTCTAAGAACTTGCCACTCACTGAATTTTTAGCTTACGTTTTCAATGTTTTCTACCCTCCAGCACCCCCACATCAGGTAGTGATCAAGGGCCAAACGTTGTAGACCTTCATTTTGTATGGATATAGTTAACTTTTGCATTGCATCATGAGGTAGTTAAATGTAACAAGAGTGACGCTAAGGACTTGTATTTTGAGAGATCCCTCATTAGACTAAAATTATTTTGTATGTAATATTTAGTTTGAATTTTAACTCTCCTTGAAACTTTGAAATTTTCCGGATGTGTGTGGTGAGACACTTGTTGTGTTGGGAGATCTAAAGTATCAATTTACATACATATAGAAGTTAAAAATCTCTTCC

mRNA sequence

ATGGAAAAACTAGGCCAAAGTAGAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

Coding sequence (CDS)

ATGGAAAAACTAGGCCAAAGTAGAATGAGTTATTTAAAAGAAAAAACGAGGGATAAAAGGAGTTCGGGAAACTTCACGAGTGGCAAGCGCTCATCTCTTCTCTTGGAGCCATTTGTCATTACCTCGTTCTCTCTCGATCGCCGAACACTATTTTCACTTCCCTTGCACATTAACCGCAACACACGTCGGAACAACATCACACCCAGTCGTTATGCGTTGCATTTCTCTCTCACTCTTTCACACCGACTCCACCAGTCATTGTGCACCGCTCGCCTCGCCAGACTTGGTCGCTACTCCAGTTGCGGTTTTGATCTGTCGTTCTGTCCAAGTTCTTCAAATTTTGTTGCCAGTCCAGCTACTCTAACACCCAGTCACCATTCGTCACTATTTTGGAGCTGTATCGCCATTAGCCTTGCTCTTTTTTGA

Protein sequence

MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRNTRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPATLTPSHHSSLFWSCIAISLALF
Homology
[Close]
BLAST of CsaV3_1G044390 vs. NCBI nr
Match: KGN66656.1 (hypothetical protein Csa_1G654850 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 1.1e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHSSLFWSCIAISLALF 142
           LTPSHHSSLFWSCIAISLALF
Sbjct: 121 LTPSHHSSLFWSCIAISLALF 141

[Close]
BLAST of CsaV3_1G044390 vs. TrEMBL
Match: tr|A0A0A0M357|A0A0A0M357_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654850 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.2e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60
           MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN
Sbjct: 1   MEKLGQSRMSYLKEKTRDKRSSGNFTSGKRSSLLLEPFVITSFSLDRRTLFSLPLHINRN 60

Query: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120
           TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT
Sbjct: 61  TRRNNITPSRYALHFSLTLSHRLHQSLCTARLARLGRYSSCGFDLSFCPSSSNFVASPAT 120

Query: 121 LTPSHHSSLFWSCIAISLALF 142
           LTPSHHSSLFWSCIAISLALF
Sbjct: 121 LTPSHHSSLFWSCIAISLALF 141

The following BLAST results are available for this feature:
BLAST of CsaV3_1G044390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66656.11.1e-70100.00hypothetical protein Csa_1G654850 [Cucumis sativus][more]
BLAST of CsaV3_1G044390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G044390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G044390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M357|A0A0A0M357_CUCSA7.2e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654850 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G044390.1CsaV3_1G044390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G044390CSPI01G32170Wild cucumber (PI 183967)cpicucB000
CsaV3_1G044390CsGy1G031110Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G044390Wax gourdcucwgoB098
CsaV3_1G044390Wax gourdcucwgoB115
CsaV3_1G044390Silver-seed gourdcarcucB0573
CsaV3_1G044390Silver-seed gourdcarcucB1010
CsaV3_1G044390Cucumber (Gy14) v1cgycucB542
CsaV3_1G044390Cucurbita maxima (Rimu)cmacucB0066
CsaV3_1G044390Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G044390Cucurbita moschata (Rifu)cmocucB0053
CsaV3_1G044390Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G044390Cucurbita pepo (Zucchini)cpecucB0000
CsaV3_1G044390Cucurbita pepo (Zucchini)cpecucB0428
CsaV3_1G044390Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G044390Melon (DHL92) v3.5.1cucmeB044
CsaV3_1G044390Melon (DHL92) v3.6.1cucmedB041
CsaV3_1G044390Watermelon (Charleston Gray)cucwcgB041
CsaV3_1G044390Watermelon (97103) v1cucwmB016
CsaV3_1G044390Watermelon (97103) v2cucwmbB033