Csa1G399640 (gene) Cucumber (Chinese Long) v2

NameCsa1G399640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptioncDNA clone:J033114C24, full insert sequence
LocationChr1 : 14774852 .. 14776807 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGATCAACTGTTATGCAGCTTGTTTTGTCTAATATCCTTACTATTTCTCATCCTTGTTCTAATTCCTGAAAATGCAGCTAACATGGTGGAAAAGAAATTAGGAAATTCCATTGATGAGACTTTAATTAATGCAATTTTAATCAAATAATCAGTTGGAAGTTGAAATAGGCTTCTCTTCCATTGAAATAGGAGGATTGGAGATGGGAAATGTCAAATAGAGAAGCGCTCAATCTTCATTGCCCAATGCTGCTAGAAGAATTTTACATTAGGAGGATGCTTGGTGGTTTAAAATGGTTGGACAATAGTATAATTTAGAAAAGAATGGGTAGTGGTTGAAGGCAAGGTGGAAAGGAAGACGAAAAAAAATCCTAGCGTCTGTAATTGCATCAGTATGGTGGCACAATAGTAATGACTGTCAAGAGATGTGCTGTTTCTTTTATGGAGGAGGGGCCTATGCATTCCTAAGATTTGTTTTTGATGGTTCCATCTTATTATTTTCACAATAGAAAATGTTATTGATTCAAAATCAGAGCTGGATCCTTGCCTCTAGCAGAGATTTAAGAAGAGCAAAGTGACGTACCTTTGTCCTCTTGCTCAGCATGTTTACTTGATACATATTTTGGATGCTAAATGTTGGTGGTTAGGTAGTTTTAAGTTCTTTGCATGAAAATCCTTTTTTAACCACCATTCTAGCATATAAAGAAATCCACCTTTCTAAGTATTGAGTATTGCATCAATGTCTTTCTTGGGCTGCAACTTTCTGAAGACTAAATACAACTGTTGAGATTCAAAAGGTGTTTCCACTTCCTAACTGGACCTTTTCTTCTAATTGATATCTTTGCAACAGTTAGATGAAGGTCTGGATCATATTCTTCGTCCATGGTTTTGCTAACTCCTGCTAGAATAAGCCTTTAATTCTGCCGGTGTCTCCTTCTAACCTTAGAAACTATAATTCAACTGCTATGCATTAGACATTTAAAATTCTTTAATCTAGTGCCATCAAGTATCAAAACCATCCTATAGGGATTGTGAAAAATGAAAACCTTTGAGTCGTATATTATATGGCTCAATAGTGGGAAGAGATGTGGGAGTTTGCTAATTGCTAGTTGGTTTTTCCAATCATGTTTTACAAAGAAAAACCCAAATAGGTATCCTTTCTGCAACTGCTGTTGTTCTTGTACGACAGTTTGACAGATGGAGAAGCAGAATTCACTTGTTCTTGGACTGCCCATTTTCTCTTAGAGGAGTCGGGCCTATTGGTGTTTCTTTGCTAGCAATAGTTCAAGAAGCAAGCCAAGATTCTCTAATTGATCCATTTAATTGATCCACTTATGAAAGTTGGTTTTAATTGATACAATACTCAGGTTTTTATTGATATGACCTCTTTCTCCCTTTTCTAGTAAAAGTGTTTAAGAGCTAAGCTTACTGAAGTTCACAAAATTTTTGCTCGTTTCTGTTTTTTATATGACTCCATGATATGAAAAAGGACCATTTTATTAAAATGTCTTTTAACATGCTGCTTTCTGGTTGCAGATTCGTTTGGAAAATAAAGCTCCAGTGCATAGTGGAATAGCATGTTTAGGTTCAAAAGGGTTATCGGTGCTTGGAGGTGTAGTTCCAACACTTTATGAAGAATGGAAAATGAACCAAAAATATTCTGGTTTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATGTCAGTATTTTAGTTTAAGCGCCTATATTCTTGTACTGCTTTTATTTCTGTTGTATTGCTTATTGCGACTGTTGCTTAAATTATTGCCTTTGCTTTCTTCATTAAAAATTTATCATCTAGAGTGGCAAGTTTTGGGACTTGGGTCCCTTGCGATCCTTGATGCATATTAG

mRNA sequence

ATGATTCGTTTGGAAAATAAAGCTCCAGTGCATAGTGGAATAGCATGTTTAGGTTCAAAAGGGTTATCGGTGCTTGGAGGTGTAGTTCCAACACTTTATGAAGAATGGAAAATGAACCAAAAATATTCTGGTTTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATGTCAGTATTTTAGTTTAAGCGCCTATATTCTTGTACTGCTTTTATTTCTGTTGTATTGCTTATTGCGACTGTTGCTTAAATTATTGCCTTTGCTTTCTTCATTAAAAATTTATCATCTAGAGTGGCAAGTTTTGGGACTTGGGTCCCTTGCGATCCTTGATGCATATTAG

Coding sequence (CDS)

ATGATTCGTTTGGAAAATAAAGCTCCAGTGCATAGTGGAATAGCATGTTTAGGTTCAAAAGGGTTATCGGTGCTTGGAGGTGTAGTTCCAACACTTTATGAAGAATGGAAAATGAACCAAAAATATTCTGGTTTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATGTCAGTATTTTAGTTTAAGCGCCTATATTCTTGTACTGCTTTTATTTCTGTTGTATTGCTTATTGCGACTGTTGCTTAAATTATTGCCTTTGCTTTCTTCATTAAAAATTTATCATCTAGAGTGGCAAGTTTTGGGACTTGGGTCCCTTGCGATCCTTGATGCATATTAG

Protein sequence

MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKIYHLEWQVLGLGSLAILDAY*
BLAST of Csa1G399640 vs. TrEMBL
Match: A0A0A0LWZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G399640 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.9e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1

Query: 1   MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDG 60
           MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDG
Sbjct: 1   MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDG 60

Query: 61  PPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKI 120
           PPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKI
Sbjct: 61  PPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKI 120

Query: 121 YHLEWQVLGLGSLAILDAY 140
           YHLEWQVLGLGSLAILDAY
Sbjct: 121 YHLEWQVLGLGSLAILDAY 139

BLAST of Csa1G399640 vs. TrEMBL
Match: D7TBU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04530 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           +RLE KA +H+GI CL  K ++VLGGVV +LYEEW+MNQKYSG SR S+RLSQ     GP
Sbjct: 131 VRLEKKAAIHNGIICLNPKVITVLGGVVKSLYEEWQMNQKYSGFSRSSLRLSQESGTGGP 190

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQYFSLS 91
           PPFEKLQ+GAP+++  ++G+ S  Y S S
Sbjct: 191 PPFEKLQIGAPTRRSSEQGRISSCYGSTS 219

BLAST of Csa1G399640 vs. TrEMBL
Match: A5BMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030347 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           +RLE KA +H+GI CL  K ++VLGGVV +LYEEW+MNQKYSG SR S+RLSQ     GP
Sbjct: 22  VRLEKKAAIHNGIICLNPKVITVLGGVVKSLYEEWQMNQKYSGFSRSSLRLSQESGTGGP 81

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQYFSLS 91
           PPFEKLQ+GAP+++  ++G+ S  Y S S
Sbjct: 82  PPFEKLQIGAPTRRSSEQGRISSCYGSTS 110

BLAST of Csa1G399640 vs. TrEMBL
Match: B9ILH7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06350g PE=4 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 49/85 (57.65%), Postives = 66/85 (77.65%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           +RL+NKAP+H+ I CL  K ++V+GG+V +L+EEW+MNQKYSG SR S+RLSQ  D  GP
Sbjct: 147 VRLDNKAPLHNCIVCLNPKVITVIGGIVQSLHEEWQMNQKYSGFSRSSLRLSQETDNGGP 206

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQY 87
           PPFEKLQ+GAPS++  ++   S  Y
Sbjct: 207 PPFEKLQIGAPSRRSSRQAIRSVSY 231

BLAST of Csa1G399640 vs. TrEMBL
Match: A0A103XNF7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004097 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.2e-21
Identity = 46/80 (57.50%), Postives = 63/80 (78.75%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           IRLEN   +HSGI CL +K ++VLGG+VP LYEEW+MN+KY+G +R +++LSQ  D  GP
Sbjct: 136 IRLENNVVMHSGILCLNAKVVTVLGGIVPALYEEWEMNRKYAGFTRSTLKLSQSDDTGGP 195

Query: 62  PPFEKLQVGAPSQKLGQKGK 82
           PPFEK Q GAPS+++ Q+ +
Sbjct: 196 PPFEKFQAGAPSRRINQQNR 215

BLAST of Csa1G399640 vs. TAIR10
Match: AT5G19950.1 (AT5G19950.1 Domain of unknown function (DUF1767))

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           +RLENKA +  G+ CL  K ++VLGG V +L EEW+M +KY+ L+R   + S+ G  DGP
Sbjct: 151 VRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYASLARS--QESKAG--DGP 210

Query: 62  PPFEKLQV 70
           PPFE+L++
Sbjct: 211 PPFEELKI 214

BLAST of Csa1G399640 vs. NCBI nr
Match: gi|700210291|gb|KGN65387.1| (hypothetical protein Csa_1G399640 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 8.5e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1

Query: 1   MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDG 60
           MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDG
Sbjct: 1   MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDG 60

Query: 61  PPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKI 120
           PPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKI
Sbjct: 61  PPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKI 120

Query: 121 YHLEWQVLGLGSLAILDAY 140
           YHLEWQVLGLGSLAILDAY
Sbjct: 121 YHLEWQVLGLGSLAILDAY 139

BLAST of Csa1G399640 vs. NCBI nr
Match: gi|778660601|ref|XP_004149862.2| (PREDICTED: tudor domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-39
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP
Sbjct: 139 IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 198

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQYFSLS 91
           PPFEKLQVGAPSQKLGQKGKSS Q  S S
Sbjct: 199 PPFEKLQVGAPSQKLGQKGKSSYQQESSS 227

BLAST of Csa1G399640 vs. NCBI nr
Match: gi|659126760|ref|XP_008463350.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-36
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           IRLENKAPVHSGIACLG KGLSVLGGVVPTLYEEWKMNQKYSGLSR S+RLSQGGD+DGP
Sbjct: 139 IRLENKAPVHSGIACLGPKGLSVLGGVVPTLYEEWKMNQKYSGLSRASIRLSQGGDIDGP 198

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQYFSLS 91
           PPFEKLQVG PSQKLG+KGK S Q  S S
Sbjct: 199 PPFEKLQVGVPSQKLGRKGKFSYQQESSS 227

BLAST of Csa1G399640 vs. NCBI nr
Match: gi|659126756|ref|XP_008463347.1| (PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-36
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           IRLENKAPVHSGIACLG KGLSVLGGVVPTLYEEWKMNQKYSGLSR S+RLSQGGD+DGP
Sbjct: 197 IRLENKAPVHSGIACLGPKGLSVLGGVVPTLYEEWKMNQKYSGLSRASIRLSQGGDIDGP 256

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQYFSLS 91
           PPFEKLQVG PSQKLG+KGK S Q  S S
Sbjct: 257 PPFEKLQVGVPSQKLGRKGKFSYQQESSS 285

BLAST of Csa1G399640 vs. NCBI nr
Match: gi|743933128|ref|XP_011010872.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Populus euphratica])

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1

Query: 2   IRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGP 61
           +RL+NKAPVH+ I CL  K ++V+GG+VP+L+EEW+MNQKYSG SR S+RLSQ  D  GP
Sbjct: 147 VRLDNKAPVHNCIVCLNPKVITVIGGMVPSLHEEWQMNQKYSGFSRSSLRLSQETDNGGP 206

Query: 62  PPFEKLQVGAPSQKLGQKGKSSCQY 87
           PPFEKLQ+GAPS++  +K   S  Y
Sbjct: 207 PPFEKLQIGAPSRRSSRKAMRSVSY 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LWZ7_CUCSA5.9e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G399640 PE=4 SV=1[more]
D7TBU5_VITVI1.1e-2259.55Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04530 PE=4 SV=... [more]
A5BMK2_VITVI1.1e-2259.55Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030347 PE=4 SV=1[more]
B9ILH7_POPTR4.7e-2157.65Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06350g PE=4 SV=2[more]
A0A103XNF7_CYNCS6.2e-2157.50Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004097 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G19950.12.1e-1250.00 Domain of unknown function (DUF1767)[more]
Match NameE-valueIdentityDescription
gi|700210291|gb|KGN65387.1|8.5e-72100.00hypothetical protein Csa_1G399640 [Cucumis sativus][more]
gi|778660601|ref|XP_004149862.2|1.9e-3995.51PREDICTED: tudor domain-containing protein 3 [Cucumis sativus][more]
gi|659126760|ref|XP_008463350.1|5.7e-3687.64PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo][more]
gi|659126756|ref|XP_008463347.1|5.7e-3687.64PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo][more]
gi|743933128|ref|XP_011010872.1|1.2e-2261.18PREDICTED: tudor domain-containing protein 3 isoform X2 [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU114810cucumber EST collection version 3.0transcribed_cluster
CU124323cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G399640.1Csa1G399640.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU124323CU124323transcribed_cluster
CU114810CU114810transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13681FAMILY NOT NAMEDcoord: 2..71
score: 1.6