Csa1G399640 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAGATCAACTGTTATGCAGCTTGTTTTGTCTAATATCCTTACTATTTCTCATCCTTGTTCTAATTCCTGAAAATGCAGCTAACATGGTGGAAAAGAAATTAGGAAATTCCATTGATGAGACTTTAATTAATGCAATTTTAATCAAATAATCAGTTGGAAGTTGAAATAGGCTTCTCTTCCATTGAAATAGGAGGATTGGAGATGGGAAATGTCAAATAGAGAAGCGCTCAATCTTCATTGCCCAATGCTGCTAGAAGAATTTTACATTAGGAGGATGCTTGGTGGTTTAAAATGGTTGGACAATAGTATAATTTAGAAAAGAATGGGTAGTGGTTGAAGGCAAGGTGGAAAGGAAGACGAAAAAAAATCCTAGCGTCTGTAATTGCATCAGTATGGTGGCACAATAGTAATGACTGTCAAGAGATGTGCTGTTTCTTTTATGGAGGAGGGGCCTATGCATTCCTAAGATTTGTTTTTGATGGTTCCATCTTATTATTTTCACAATAGAAAATGTTATTGATTCAAAATCAGAGCTGGATCCTTGCCTCTAGCAGAGATTTAAGAAGAGCAAAGTGACGTACCTTTGTCCTCTTGCTCAGCATGTTTACTTGATACATATTTTGGATGCTAAATGTTGGTGGTTAGGTAGTTTTAAGTTCTTTGCATGAAAATCCTTTTTTAACCACCATTCTAGCATATAAAGAAATCCACCTTTCTAAGTATTGAGTATTGCATCAATGTCTTTCTTGGGCTGCAACTTTCTGAAGACTAAATACAACTGTTGAGATTCAAAAGGTGTTTCCACTTCCTAACTGGACCTTTTCTTCTAATTGATATCTTTGCAACAGTTAGATGAAGGTCTGGATCATATTCTTCGTCCATGGTTTTGCTAACTCCTGCTAGAATAAGCCTTTAATTCTGCCGGTGTCTCCTTCTAACCTTAGAAACTATAATTCAACTGCTATGCATTAGACATTTAAAATTCTTTAATCTAGTGCCATCAAGTATCAAAACCATCCTATAGGGATTGTGAAAAATGAAAACCTTTGAGTCGTATATTATATGGCTCAATAGTGGGAAGAGATGTGGGAGTTTGCTAATTGCTAGTTGGTTTTTCCAATCATGTTTTACAAAGAAAAACCCAAATAGGTATCCTTTCTGCAACTGCTGTTGTTCTTGTACGACAGTTTGACAGATGGAGAAGCAGAATTCACTTGTTCTTGGACTGCCCATTTTCTCTTAGAGGAGTCGGGCCTATTGGTGTTTCTTTGCTAGCAATAGTTCAAGAAGCAAGCCAAGATTCTCTAATTGATCCATTTAATTGATCCACTTATGAAAGTTGGTTTTAATTGATACAATACTCAGGTTTTTATTGATATGACCTCTTTCTCCCTTTTCTAGTAAAAGTGTTTAAGAGCTAAGCTTACTGAAGTTCACAAAATTTTTGCTCGTTTCTGTTTTTTATATGACTCCATGATATGAAAAAGGACCATTTTATTAAAATGTCTTTTAACATGCTGCTTTCTGGTTGCAGATTCGTTTGGAAAATAAAGCTCCAGTGCATAGTGGAATAGCATGTTTAGGTTCAAAAGGGTTATCGGTGCTTGGAGGTGTAGTTCCAACACTTTATGAAGAATGGAAAATGAACCAAAAATATTCTGGTTTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATGTCAGTATTTTAGTTTAAGCGCCTATATTCTTGTACTGCTTTTATTTCTGTTGTATTGCTTATTGCGACTGTTGCTTAAATTATTGCCTTTGCTTTCTTCATTAAAAATTTATCATCTAGAGTGGCAAGTTTTGGGACTTGGGTCCCTTGCGATCCTTGATGCATATTAG ATGATTCGTTTGGAAAATAAAGCTCCAGTGCATAGTGGAATAGCATGTTTAGGTTCAAAAGGGTTATCGGTGCTTGGAGGTGTAGTTCCAACACTTTATGAAGAATGGAAAATGAACCAAAAATATTCTGGTTTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATGTCAGTATTTTAGTTTAAGCGCCTATATTCTTGTACTGCTTTTATTTCTGTTGTATTGCTTATTGCGACTGTTGCTTAAATTATTGCCTTTGCTTTCTTCATTAAAAATTTATCATCTAGAGTGGCAAGTTTTGGGACTTGGGTCCCTTGCGATCCTTGATGCATATTAG ATGATTCGTTTGGAAAATAAAGCTCCAGTGCATAGTGGAATAGCATGTTTAGGTTCAAAAGGGTTATCGGTGCTTGGAGGTGTAGTTCCAACACTTTATGAAGAATGGAAAATGAACCAAAAATATTCTGGTTTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATGTCAGTATTTTAGTTTAAGCGCCTATATTCTTGTACTGCTTTTATTTCTGTTGTATTGCTTATTGCGACTGTTGCTTAAATTATTGCCTTTGCTTTCTTCATTAAAAATTTATCATCTAGAGTGGCAAGTTTTGGGACTTGGGTCCCTTGCGATCCTTGATGCATATTAG MIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLGQKGKSSCQYFSLSAYILVLLLFLLYCLLRLLLKLLPLLSSLKIYHLEWQVLGLGSLAILDAY*
BLAST of Csa1G399640 vs. TrEMBL
Match: A0A0A0LWZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G399640 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 5.9e-72 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
BLAST of Csa1G399640 vs. TrEMBL
Match: D7TBU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04530 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22 Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1
BLAST of Csa1G399640 vs. TrEMBL
Match: A5BMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030347 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22 Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1
BLAST of Csa1G399640 vs. TrEMBL
Match: B9ILH7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06350g PE=4 SV=2) HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21 Identity = 49/85 (57.65%), Postives = 66/85 (77.65%), Query Frame = 1
BLAST of Csa1G399640 vs. TrEMBL
Match: A0A103XNF7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004097 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 6.2e-21 Identity = 46/80 (57.50%), Postives = 63/80 (78.75%), Query Frame = 1
BLAST of Csa1G399640 vs. TAIR10
Match: AT5G19950.1 (AT5G19950.1 Domain of unknown function (DUF1767)) HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12 Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
BLAST of Csa1G399640 vs. NCBI nr
Match: gi|700210291|gb|KGN65387.1| (hypothetical protein Csa_1G399640 [Cucumis sativus]) HSP 1 Score: 278.1 bits (710), Expect = 8.5e-72 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
BLAST of Csa1G399640 vs. NCBI nr
Match: gi|778660601|ref|XP_004149862.2| (PREDICTED: tudor domain-containing protein 3 [Cucumis sativus]) HSP 1 Score: 170.6 bits (431), Expect = 1.9e-39 Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 1
BLAST of Csa1G399640 vs. NCBI nr
Match: gi|659126760|ref|XP_008463350.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo]) HSP 1 Score: 159.1 bits (401), Expect = 5.7e-36 Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 1
BLAST of Csa1G399640 vs. NCBI nr
Match: gi|659126756|ref|XP_008463347.1| (PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo]) HSP 1 Score: 159.1 bits (401), Expect = 5.7e-36 Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 1
BLAST of Csa1G399640 vs. NCBI nr
Match: gi|743933128|ref|XP_011010872.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Populus euphratica]) HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22 Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |