CU114810 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU114810
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 14775109 .. 14777598 (+)
Sequence length	239

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTGTGATAATCTCATGGATTCACGGGATAAACCAGAATATTTTTGGTTCATTTTCCATTCTTCATAAAGTGTTGGAACTACACCTCCAAGCACCGATAACCCTTTTGAACCTAAACATGCTATTCCACTATGCACTGGAGCTTTATTTTCCAAACGAATCTTGGTGCCAGGAGGAATGTCATCAGGAATAGATGGTATATGAGAGTACTCTATAGCAGTAATCTCAGAGTGTCCATCA

Library


Library category	ESTs
fruit (8DPP) library	4

Homology

[Close]

BLAST of CU114810 vs. TrEMBL
Match: A0A067K7X7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13256 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-16
Identity = 46/79 (58.23%), Postives = 50/79 (63.29%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSEITA+EYSH          G K+RLENKAPVHSGI C               LYEE
Sbjct: 119 DGHSEITAVEYSHIPLIPKDVVPGAKVRLENKAPVHSGILCLNPKVVTLIGGVVQPLYEE 178

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           W+M QKYSG+SR SMRLSQ
Sbjct: 179 WQMIQKYSGISRSSMRLSQ 197

Query: 122  181
           
Sbjct: 239  197

Query: 182  239
           
Sbjct: 299  197

[Close]

BLAST of CU114810 vs. TrEMBL
Match: A0A072V9B3_MEDTR (Tudor domain protein OS=Medicago truncatula GN=MTR_2g050180 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-16
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = -2


Query: 11  DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 70
           DGHSEITA+EY+H          GTKIRLENK PVHSGIAC              +LYEE
Sbjct: 119 DGHSEITAVEYTHIPFLPDNVVPGTKIRLENKVPVHSGIACLNPKALTVLGGVVQSLYEE 178

Query: 71  WKMNQKYSGLSRESMR 130
           W+MNQKYSG SR S+R
Sbjct: 179 WQMNQKYSGFSRSSIR 194

Query: 131  190
           
Sbjct: 239  194

Query: 191  239
           
Sbjct: 299  194

[Close]

BLAST of CU114810 vs. TrEMBL
Match: A0A061GP19_THECC (Domain of Uncharacterized protein function, putative isoform 1 OS=Theobroma cacao GN=TCM_037953 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.4e-15
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSEITAIE+SH          GTKIRLENKA +H GI C              +LYEE
Sbjct: 142 DGHSEITAIEFSHVPAIPDNVVPGTKIRLENKAIIHGGILCLNPKVVSLLGGVVQSLYEE 201

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           W+MNQKYSG SR S+R SQ
Sbjct: 202 WEMNQKYSGFSRSSLRSSQ 220

Query: 122  181
           
Sbjct: 262  220

Query: 182  239
           
Sbjct: 322  220

[Close]

BLAST of CU114810 vs. TrEMBL
Match: A0A061GNC6_THECC (Domain of Uncharacterized protein function, putative isoform 2 OS=Theobroma cacao GN=TCM_037953 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.4e-15
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSEITAIE+SH          GTKIRLENKA +H GI C              +LYEE
Sbjct: 119 DGHSEITAIEFSHVPAIPDNVVPGTKIRLENKAIIHGGILCLNPKVVSLLGGVVQSLYEE 178

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           W+MNQKYSG SR S+R SQ
Sbjct: 179 WEMNQKYSGFSRSSLRSSQ 197

Query: 122  181
           
Sbjct: 239  197

Query: 182  239
           
Sbjct: 299  197

[Close]

BLAST of CU114810 vs. TrEMBL
Match: A0A151RJH7_CAJCA (Tudor domain-containing protein 3 OS=Cajanus cajan GN=KK1_035871 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = -2


Query: 11  DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 70
           DGHSEITA+EYSH          GTKIRLENK  VHSGI C              +L+EE
Sbjct: 110 DGHSEITAVEYSHVPSIPDNVVPGTKIRLENKVVVHSGIVCLNPKVLTVLGGVVKSLHEE 169

Query: 71  WKMNQKYSGLSRESMR 130
           W+MNQKYSGLSR S+R
Sbjct: 170 WEMNQKYSGLSRSSLR 185

Query: 131  190
           
Sbjct: 230  185

Query: 191  239
           
Sbjct: 290  185

[Close]

BLAST of CU114810 vs. NCBI nr
Match: gi|778660601|ref|XP_004149862.2| (PREDICTED: tudor domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 56/79 (70.89%), Postives = 56/79 (70.89%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSEITAIEYSH          GTKIRLENKAPVHSGIAC             PTLYEE
Sbjct: 113 DGHSEITAIEYSHIPSIPDDIPPGTKIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEE 172

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           WKMNQKYSGLSRESMRLSQ
Sbjct: 173 WKMNQKYSGLSRESMRLSQ 191

Query: 122  181
           
Sbjct: 233  191

Query: 182  239
           
Sbjct: 293  191

[Close]

BLAST of CU114810 vs. NCBI nr
Match: gi|659126760|ref|XP_008463350.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-20
Identity = 53/79 (67.09%), Postives = 55/79 (69.62%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSE+TAIEYSH          GTKIRLENKAPVHSGIAC             PTLYEE
Sbjct: 113 DGHSELTAIEYSHIPFIPDDIPPGTKIRLENKAPVHSGIACLGPKGLSVLGGVVPTLYEE 172

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           WKMNQKYSGLSR S+RLSQ
Sbjct: 173 WKMNQKYSGLSRASIRLSQ 191

Query: 122  181
           
Sbjct: 233  191

Query: 182  239
           
Sbjct: 293  191

[Close]

BLAST of CU114810 vs. NCBI nr
Match: gi|643722581|gb|KDP32331.1| (hypothetical protein JCGZ_13256 [Jatropha curcas])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 46/79 (58.23%), Postives = 50/79 (63.29%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSEITA+EYSH          G K+RLENKAPVHSGI C               LYEE
Sbjct: 119 DGHSEITAVEYSHIPLIPKDVVPGAKVRLENKAPVHSGILCLNPKVVTLIGGVVQPLYEE 178

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           W+M QKYSG+SR SMRLSQ
Sbjct: 179 WQMIQKYSGISRSSMRLSQ 197

Query: 122  181
           
Sbjct: 239  197

Query: 182  239
           
Sbjct: 299  197

[Close]

BLAST of CU114810 vs. NCBI nr
Match: gi|802640663|ref|XP_012078933.1| (PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 46/79 (58.23%), Postives = 50/79 (63.29%), Query Frame = -2


Query: 2   DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 61
           DGHSEITA+EYSH          G K+RLENKAPVHSGI C               LYEE
Sbjct: 119 DGHSEITAVEYSHIPLIPKDVVPGAKVRLENKAPVHSGILCLNPKVVTLIGGVVQPLYEE 178

Query: 62  WKMNQKYSGLSRESMRLSQ 121
           W+M QKYSG+SR SMRLSQ
Sbjct: 179 WQMIQKYSGISRSSMRLSQ 197

Query: 122  181
           
Sbjct: 239  197

Query: 182  239
           
Sbjct: 299  197

[Close]

BLAST of CU114810 vs. NCBI nr
Match: gi|502149673|ref|XP_004507622.1| (PREDICTED: tudor domain-containing protein 3 isoform X1 [Cicer arietinum])

HSP 1 Score: 91.7 bits (226), Expect = 6.3e-16
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = -2


Query: 11  DGHSEITAIEYSHXXXXXXXXXXGTKIRLENKAPVHSGIACXXXXXXXXXXXXXPTLYEE 70
           DGHSEITA+EYSH          GTKIRLENK PVHSGIAC              +LYEE
Sbjct: 119 DGHSEITAVEYSHIPFIPDSVVPGTKIRLENKVPVHSGIACLNPKALTVLGGVVQSLYEE 178

Query: 71  WKMNQKYSGLSRESMR 130
           W+MN+KYSG SR S+R
Sbjct: 179 WQMNKKYSGFSRSSLR 194

Query: 131  190
           
Sbjct: 239  194

Query: 191  239
           
Sbjct: 299  194

The following BLAST results are available for this feature:

BLAST of CU114810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067K7X7_JATCU	2.6e-16	58.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13256 PE=4 SV=1	[more]
A0A072V9B3_MEDTR	7.5e-16	57.89	Tudor domain protein OS=Medicago truncatula GN=MTR_2g050180 PE=4 SV=1	[more]
A0A061GP19_THECC	6.4e-15	55.70	Domain of Uncharacterized protein function, putative isoform 1 OS=Theobroma caca...	[more]
A0A061GNC6_THECC	6.4e-15	55.70	Domain of Uncharacterized protein function, putative isoform 2 OS=Theobroma caca...	[more]
A0A151RJH7_CAJCA	1.1e-14	56.58	Tudor domain-containing protein 3 OS=Cajanus cajan GN=KK1_035871 PE=4 SV=1	[more]

BLAST of CU114810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660601\|ref\|XP_004149862.2\|	1.3e-21	70.89	PREDICTED: tudor domain-containing protein 3 [Cucumis sativus]	[more]
gi\|659126760\|ref\|XP_008463350.1\|	3.3e-20	67.09	PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo]	[more]
gi\|643722581\|gb\|KDP32331.1\|	2.8e-16	58.23	hypothetical protein JCGZ_13256 [Jatropha curcas]	[more]
gi\|802640663\|ref\|XP_012078933.1\|	2.8e-16	58.23	PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]	[more]
gi\|502149673\|ref\|XP_004507622.1\|	6.3e-16	57.89	PREDICTED: tudor domain-containing protein 3 isoform X1 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013894	RMI1_N

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G399640	Csa1G399640	gene
Csa1G399650	Csa1G399650	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MM4YH	FKNP3UI02MM4YH	EST
FKNP3UI02NYVWJ	FKNP3UI02NYVWJ	EST
FKNP3UI02NZTHR	FKNP3UI02NZTHR	EST
FKNP3UI02OKYEQ	FKNP3UI02OKYEQ	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013894	RecQ mediated genome instability protein, N-terminal	PFAM	PF08585	RMI1_N	coord: 2..64 score: 2.9
None	No IPR available	PANTHER	PTHR13681	FAMILY NOT NAMED	coord: 2..77 score: 1.8