CU124323 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU124323
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 14768444 .. 14775140 (-)
Sequence length180
The following sequences are available for this feature:

transcribed_cluster sequence

TTATCCCGTGAATCCATGAGATTATCACAAGGAGGAGATGTTGATGGTCCACCACCATTTGAGAAGTTGCAAGTTGGAGCACCTTCACAAAAACTTGGTCAGAAAGGAAAATCTTCATATCAACAGGAATCATCCTCAAAGAGCAATAGGCCTTCTGCTGATTCAGGAAATATTGAAAGG
Library categoryESTs
fruit (8DPP) library1
BLAST of CU124323 vs. TrEMBL
Match: A0A0A0LWZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G399640 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1

Query: 1   LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG 60
           LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG
Sbjct: 45  LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG 77

Query: 61  100
           
Sbjct: 105 77

BLAST of CU124323 vs. NCBI nr
Match: gi|778660601|ref|XP_004149862.2| (PREDICTED: tudor domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 44/59 (74.58%), Postives = 44/59 (74.58%), Query Frame = 1

Query: 1   LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLGXXXXXXXXXXXXXXXNRPSADSGNIE 60
           LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG               NRPSADSGNIE
Sbjct: 182 LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLGQKGKSSYQQESSSKSNRPSADSGNIE 240

Query: 61  120
           
Sbjct: 242 240

Query: 121 178
           
Sbjct: 302 240

BLAST of CU124323 vs. NCBI nr
Match: gi|659126756|ref|XP_008463347.1| (PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 1

Query: 1   LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLGXXXXXXXXXXXXXXXNRPSADSGNIE 60
           LSR S+RLSQGGD+DGPPPFEKLQVG PSQKLG               NRPSADSGN+E
Sbjct: 240 LSRASIRLSQGGDIDGPPPFEKLQVGVPSQKLGRKGKFSYQQESSSKSNRPSADSGNVE 298

Query: 61  120
           
Sbjct: 300 298

Query: 121 178
           
Sbjct: 360 298

BLAST of CU124323 vs. NCBI nr
Match: gi|659126760|ref|XP_008463350.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 1

Query: 1   LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLGXXXXXXXXXXXXXXXNRPSADSGNIE 60
           LSR S+RLSQGGD+DGPPPFEKLQVG PSQKLG               NRPSADSGN+E
Sbjct: 182 LSRASIRLSQGGDIDGPPPFEKLQVGVPSQKLGRKGKFSYQQESSSKSNRPSADSGNVE 240

Query: 61  120
           
Sbjct: 242 240

Query: 121 178
           
Sbjct: 302 240

BLAST of CU124323 vs. NCBI nr
Match: gi|700210291|gb|KGN65387.1| (hypothetical protein Csa_1G399640 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1

Query: 1   LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG 60
           LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG
Sbjct: 45  LSRESMRLSQGGDVDGPPPFEKLQVGAPSQKLG 77

Query: 61  100
           
Sbjct: 105 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LWZ7_CUCSA1.0e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G399640 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660601|ref|XP_004149862.2|1.5e-1474.58PREDICTED: tudor domain-containing protein 3 [Cucumis sativus][more]
gi|659126756|ref|XP_008463347.1|1.1e-1266.10PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo][more]
gi|659126760|ref|XP_008463350.1|1.1e-1266.10PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo][more]
gi|700210291|gb|KGN65387.1|1.1e-09100.00hypothetical protein Csa_1G399640 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G399640Csa1G399640gene
Csa1G398140Csa1G398140gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KWP9FFKNP3UI02KWP9FEST