Csa1G257300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G257300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Plasma membrane protein 3; contains IPR000612 (Proteolipid membrane potential modulator)
Location	Chr1 : 12585784 .. 12586633 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATTTCTTAACCTATTTTGGTTTCTGCCACACCTACCATCGTCTTCCTTCTGAATTTGCTCAGACCGCCATTAAACCATGCCATCTCGCTGTGAAATCTTCTGCGAGATTCTCATTGCTATCTTGATTCCTCCTTTGGGCGTCTGTCTCAGGCATGGATGTTGCACCGTACGTTTCTGATTCTTTTCTCCTTTTGTTTGAATTTTTCCTCTTTTCTTTTTTTTTTATCAATTCGAATGTAATTCTGATTTATGATTGCTTGTGGTGGTGGTGGTGCTTGTGGTTGCAGGTTGAGTTTTGTATATGCCTTCTTTTGACATTTCTCGGTTATGTTCCTGGAATCATCTACGCTTTGTATGCCATCGTTTTCATCGATCGCAATGAGTACTTCGATGAATACAGACGTCCTCTGTATGCGCCGGCCTAGATTCCTTAATCCTTAGGTATTTCGCTTTTACATCATTTCTTGTGCCGTAATTACTCCGAATTTCATCTGTTTGTGATTGGATCTGTGTATTGTGTATTCGCGTTCTGTTATTGCTAAAACCCTTGTATAAGTTCATCCGGATGGAGTAACCAATTAATCGATGTTGTTAATGGAACGACTACTATTTGCTTATTTGCTTGTTCAATTTTCTACTTGAAAATTTGGGATTATGATAGAAGGAAAAACTAAAACCAGTTGAGTTTAATTCCTTCTGTTTCTTGTTGTGTTCGTTGGATCGATTCGTCATCCAATTAAGGTCAAGTTTCAACTTCTCTGAGTGTTATAAGTGGAATTATTAGAAAGAGAATGAGACAATGCTGAAATTTTTTGGTAGTGGTGATTAGCAATGCATTCTTAATGT

mRNA sequence

ATGCCATCTCGCTGTGAAATCTTCTGCGAGATTCTCATTGCTATCTTGATTCCTCCTTTGGGCGTCTGTCTCAGGCATGGATGTTGCACCGTTGAGTTTTGTATATGCCTTCTTTTGACATTTCTCGGTTATGTTCCTGGAATCATCTACGCTTTGTATGCCATCGTTTTCATCGATCGCAATGAGTACTTCGATGAATACAGACGTCCTCTGTATGCGCCGGCCTAG

Coding sequence (CDS)

ATGCCATCTCGCTGTGAAATCTTCTGCGAGATTCTCATTGCTATCTTGATTCCTCCTTTGGGCGTCTGTCTCAGGCATGGATGTTGCACCGTTGAGTTTTGTATATGCCTTCTTTTGACATTTCTCGGTTATGTTCCTGGAATCATCTACGCTTTGTATGCCATCGTTTTCATCGATCGCAATGAGTACTTCGATGAATACAGACGTCCTCTGTATGCGCCGGCCTAG

Protein sequence

MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDRNEYFDEYRRPLYAPA*

Homology

[Close]

BLAST of Csa1G257300 vs. Swiss-Prot
Match: RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-29
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPS CEI CEI+IAIL+PPLGVC R GCCTVEF ICL+LT LGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 NEYFDEYRRPLYA 74
           EYFDEYRRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Csa1G257300 vs. Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-28
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S CE+ CEI IAIL+PP+GVCLRHGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 NEYFDEYRRPLY 73
          +EYFDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of Csa1G257300 vs. Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-21
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S  E+FCEILIAIL+PPLGVCL+ GCCTVEF ICL+LT LGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

[Close]

BLAST of Csa1G257300 vs. Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.1e-20
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 4  RCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDRNEY 63
          RC  F EIL+AI++PPLGV LR GCC++EFCICLLLT LGYVPGIIYA+Y +V +D ++Y
Sbjct: 5  RCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQY 64

Query: 64 FDEY 68
            EY
Sbjct: 65 QREY 68

[Close]

BLAST of Csa1G257300 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-11
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 10 EILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAI 56
          +ILIAI++PPLGV L+ GC   EF ICLLLTFLGY+PGIIYA+YAI
Sbjct: 9  DILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAI 53

[Close]

BLAST of Csa1G257300 vs. TrEMBL
Match: A0A0A0LTR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257300 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]

BLAST of Csa1G257300 vs. TrEMBL
Match: A9PBM2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s19630g PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.0e-35
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEI CEILIAIL+PPLGVC RHGCC+VEFCICLLLT LGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]

BLAST of Csa1G257300 vs. TrEMBL
Match: A0A067F037_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034455mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.5e-34
Identity = 65/74 (87.84%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MP+RCEIFCEIL+A+L+PP+GVCLRHGCC+VEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 NEYFDEYRRPLYAP 75
          +EYFDEYRRPLYAP
Sbjct: 61 DEYFDEYRRPLYAP 74

[Close]

BLAST of Csa1G257300 vs. TrEMBL
Match: V4UR64_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010088mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.5e-34
Identity = 65/74 (87.84%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MP+RCEIFCEIL+A+L+PP+GVCLRHGCC+VEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 NEYFDEYRRPLYAP 75
          +EYFDEYRRPLYAP
Sbjct: 61 DEYFDEYRRPLYAP 74

[Close]

BLAST of Csa1G257300 vs. TrEMBL
Match: M5W4C1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016228mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.5e-34
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIA+LIPPLGVCLRHGCCT+EFCICLLLT LGY+PGIIYALYAIVF++R
Sbjct: 1  MPSRCEIFCEILIAVLIPPLGVCLRHGCCTIEFCICLLLTLLGYIPGIIYALYAIVFVNR 60

Query: 61 NEYFDEYRRPLYA 74
          +EYFDEYRRPLYA
Sbjct: 61 DEYFDEYRRPLYA 73

[Close]

BLAST of Csa1G257300 vs. TAIR10
Match: AT4G28088.1 (AT4G28088.1 Low temperature and salt responsive protein family)

HSP 1 Score: 130.6 bits (327), Expect = 4.2e-31
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M + CEI CEI+IAILIPPLGVCLRHGCCT EF ICL+LT LGYVPGIIYALYAIV++DR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 NEYFDEYRRPLY 73
          +++FDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of Csa1G257300 vs. TAIR10
Match: AT4G30660.1 (AT4G30660.1 Low temperature and salt responsive protein family)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-30
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPS CEI CEI+IAIL+PPLGVC R GCCTVEF ICL+LT LGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 NEYFDEYRRPLYA 74
           EYFDEYRRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Csa1G257300 vs. TAIR10
Match: AT2G24040.1 (AT2G24040.1 Low temperature and salt responsive protein family)

HSP 1 Score: 126.7 bits (317), Expect = 6.0e-30
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S CE+ CEI IAIL+PP+GVCLRHGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 NEYFDEYRRPLY 73
          +EYFDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of Csa1G257300 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-22
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S  E+FCEILIAIL+PPLGVCL+ GCCTVEF ICL+LT LGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

[Close]

BLAST of Csa1G257300 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-14
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 6  EIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIV 57
          E F EI++AIL+PP+GV LR+GC  VEF ICLLLT LGY+PGIIYA+Y +V
Sbjct: 4  ETFLEIILAILLPPVGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53

[Close]

BLAST of Csa1G257300 vs. NCBI nr
Match: gi|449457875|ref|XP_004146673.1| (PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]

BLAST of Csa1G257300 vs. NCBI nr
Match: gi|659086272|ref|XP_008443846.1| (PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 6.3e-37
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          +EYFDEYRRPLYAPA
Sbjct: 61 DEYFDEYRRPLYAPA 75

[Close]

BLAST of Csa1G257300 vs. NCBI nr
Match: gi|566177126|ref|XP_002308410.2| (hypothetical protein POPTR_0006s19630g [Populus trichocarpa])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEI CEILIAIL+PPLGVC RHGCC+VEFCICLLLT LGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]

BLAST of Csa1G257300 vs. NCBI nr
Match: gi|645275850|ref|XP_008243011.1| (PREDICTED: UPF0057 membrane protein At4g30660-like [Prunus mume])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIA+LIPPLGVCLRHGCCT+EFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEIFCEILIAVLIPPLGVCLRHGCCTIEFCICLLLTLLGYVPGIIYALYAIVFVDR 60

Query: 61 NEYFDEYRRPLYA 74
          +EYFDEYRRPLYA
Sbjct: 61 DEYFDEYRRPLYA 73

[Close]

BLAST of Csa1G257300 vs. NCBI nr
Match: gi|568840116|ref|XP_006474017.1| (PREDICTED: UPF0057 membrane protein At4g30660 isoform X2 [Citrus sinensis])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 66/74 (89.19%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MP+RCEIFCEILIA+L+PP+GVCLRHGCC+VEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPTRCEIFCEILIAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 NEYFDEYRRPLYAP 75
          +EYFDEYRRPLYAP
Sbjct: 61 DEYFDEYRRPLYAP 74

The following BLAST results are available for this feature:

BLAST of Csa1G257300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RC24_ARATH	2.2e-29	78.08	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=...	[more]
RC22_ARATH	1.1e-28	76.39	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=...	[more]
RC23_ARATH	2.2e-21	76.67	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=...	[more]
OSR8_ORYSJ	9.1e-20	67.19	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1	[more]
LTI6B_ORYSI	1.6e-11	73.91	Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2	[more]

BLAST of Csa1G257300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTR2_CUCSA	1.2e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257300 PE=4 SV=1	[more]
A9PBM2_POPTR	7.0e-35	93.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s19630g PE=2 SV=1	[more]
A0A067F037_CITSI	4.5e-34	87.84	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034455mg PE=4 SV=1	[more]
V4UR64_9ROSI	4.5e-34	87.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010088mg PE=4 SV=1	[more]
M5W4C1_PRUPE	4.5e-34	90.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016228mg PE=4 SV=1	[more]

BLAST of Csa1G257300 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28088.1	4.2e-31	79.17	Low temperature and salt responsive protein family	[more]
AT4G30660.1	1.2e-30	78.08	Low temperature and salt responsive protein family	[more]
AT2G24040.1	6.0e-30	76.39	Low temperature and salt responsive protein family	[more]
AT4G30650.1	1.2e-22	76.67	Low temperature and salt responsive protein family	[more]
AT2G38905.1	3.6e-14	68.63	Low temperature and salt responsive protein family	[more]

BLAST of Csa1G257300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457875\|ref\|XP_004146673.1\|	1.7e-37	100.00	PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus]	[more]
gi\|659086272\|ref\|XP_008443846.1\|	6.3e-37	98.67	PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis melo]	[more]
gi\|566177126\|ref\|XP_002308410.2\|	1.0e-34	93.33	hypothetical protein POPTR_0006s19630g [Populus trichocarpa]	[more]
gi\|645275850\|ref\|XP_008243011.1\|	1.3e-34	93.15	PREDICTED: UPF0057 membrane protein At4g30660-like [Prunus mume]	[more]
gi\|568840116\|ref\|XP_006474017.1\|	3.8e-34	89.19	PREDICTED: UPF0057 membrane protein At4g30660 isoform X2 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000612	PMP3

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092985	cucumber EST collection version 3.0	transcribed_cluster
CU149639	cucumber EST collection version 3.0	transcribed_cluster
CU152445	cucumber EST collection version 3.0	transcribed_cluster
CU164132	cucumber EST collection version 3.0	transcribed_cluster
CU172652	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G257300.1	Csa1G257300.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU149639	CU149639	transcribed_cluster
CU152445	CU152445	transcribed_cluster
CU172652	CU172652	transcribed_cluster
CU092985	CU092985	transcribed_cluster
CU164132	CU164132	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..72 score: 6.4
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 9..56 score: 5.5
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G257300	Cla018743	Watermelon (97103) v1	cuwmB085
Csa1G257300	MELO3C010211	Melon (DHL92) v3.5.1	cumeB060
Csa1G257300	ClCG06G012500	Watermelon (Charleston Gray)	cuwcgB072
Csa1G257300	Lsi11G006900	Bottle gourd (USVL1VR-Ls)	culsiB011
Csa1G257300	Lsi06G011440	Bottle gourd (USVL1VR-Ls)	culsiB076
Csa1G257300	MELO3C010211.2	Melon (DHL92) v3.6.1	cumedB053
Csa1G257300	Cla97C06G121730	Watermelon (97103) v2	cuwmbB071
Csa1G257300	Bhi02G000674	Wax gourd	cuwgoB103
Csa1G257300	CSPI02G05240	Wild cucumber (PI 183967)	cpicuB060
Csa1G257300	CSPI01G17820	Wild cucumber (PI 183967)	cpicuB004
Csa1G257300	Cucsa.090120	Cucumber (Gy14) v1	cgycuB095
Csa1G257300	Cucsa.170640	Cucumber (Gy14) v1	cgycuB260
Csa1G257300	CmaCh11G004520	Cucurbita maxima (Rimu)	cmacuB102
Csa1G257300	CmoCh11G004520	Cucurbita moschata (Rifu)	cmocuB091
Csa1G257300	Cp4.1LG04g08770	Cucurbita pepo (Zucchini)	cpecuB641
Csa1G257300	CsGy1G016310	Cucumber (Gy14) v2	cgybcuB008
Csa1G257300	CsGy1G017970	Cucumber (Gy14) v2	cgybcuB006
Csa1G257300	Carg14080	Silver-seed gourd	carcuB0532

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Csa1G257300	Csa2G036040	Cucumber (Chinese Long) v2	cucuB009

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G257300	Cucurbita maxima (Rimu)	cmacuB067
Csa1G257300	Cucurbita moschata (Rifu)	cmocuB056
Csa1G257300	Cucurbita pepo (Zucchini)	cpecuB356
Csa1G257300	Bottle gourd (USVL1VR-Ls)	culsiB066
Csa1G257300	Silver-seed gourd	carcuB0136