Csa1G256730 (gene) Cucumber (Chinese Long) v2

NameCsa1G256730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12543265 .. 12543605 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTTTAAACCGTTAGAAAGACAATTCAAACACGTTTTAGTCTAGGGATATATCTGTACGTGCGAGGATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGAGAAGCCCGTGGTACTGAAATT

mRNA sequence

ATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Coding sequence (CDS)

ATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Protein sequence

MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRRWHLLAVILSLPMLCSSSVFGFSL*
BLAST of Csa1G256730 vs. TrEMBL
Match: A0A0A0LW11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256730 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.2e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1

Query: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

BLAST of Csa1G256730 vs. NCBI nr
Match: gi|700210068|gb|KGN65164.1| (hypothetical protein Csa_1G256730 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1

Query: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LW11_CUCSA7.2e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256730 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700210068|gb|KGN65164.1|1.0e-40100.00hypothetical protein Csa_1G256730 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G256730.1Csa1G256730.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G256730CSPI01G17720Wild cucumber (PI 183967)cpicuB004
The following gene(s) are paralogous to this gene:

None