Csa1G256730.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G256730.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12543265 .. 12543605 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTTTAAACCGTTAGAAAGACAATTCAAACACGTTTTAGTCTAGGGATATATCTGTACGTGCGAGGATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGAGAAGCCCGTGGTACTGAAATT

mRNA sequence

ATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Coding sequence (CDS)

ATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Protein sequence

MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRRWHLLAVILSLPMLCSSSVFGFSL*
Homology
[Close]
BLAST of Csa1G256730.1 vs. TrEMBL
Match: A0A0A0LW11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256730 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.2e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

[Close]
BLAST of Csa1G256730.1 vs. NCBI nr
Match: gi|700210068|gb|KGN65164.1| (hypothetical protein Csa_1G256730 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

The following BLAST results are available for this feature:
BLAST of Csa1G256730.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW11_CUCSA7.2e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256730 PE=4 SV=1[more]
BLAST of Csa1G256730.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210068|gb|KGN65164.1|1.0e-40100.00hypothetical protein Csa_1G256730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G256730Csa1G256730gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G256730.1Csa1G256730.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G256730.1.utr5p1Csa1G256730.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G256730.1.cds1Csa1G256730.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G256730.1.utr3p1Csa1G256730.1.utr3p1three_prime_UTR