CSPI01G17720 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G17720
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 13333781 .. 13334058 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGGGATATATCTGTACGTGCGAGGATGTGTGTTGTTGGGAGTAGAGATACCGGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

mRNA sequence

ATGTGTGTTGTTGGGAGTAGAGATACCGGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Coding sequence (CDS)

ATGTGTGTTGTTGGGAGTAGAGATACCGGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Homology

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BLAST of CSPI01G17720 vs. TrEMBL
Match: A0A0A0LW11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256730 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MCVVGSRDTGGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDT GNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

[Close]

BLAST of CSPI01G17720 vs. NCBI nr
Match: gi|700210068|gb|KGN65164.1| (hypothetical protein Csa_1G256730 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MCVVGSRDTGGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDT GNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

The following BLAST results are available for this feature:

BLAST of CSPI01G17720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G17720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW11_CUCSA	4.7e-40	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256730 PE=4 SV=1	[more]

BLAST of CSPI01G17720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G17720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210068\|gb\|KGN65164.1\|	6.7e-40	98.80	hypothetical protein Csa_1G256730 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G17720.1	CSPI01G17720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G17720	Csa1G256730	Cucumber (Chinese Long) v2	cpicuB004
CSPI01G17720	CsaV3_1G028990	Cucumber (Chinese Long) v3	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G17720	Cucumber (Chinese Long) v3	cpicucB040
CSPI01G17720	Watermelon (97103) v2	cpiwmbB068
CSPI01G17720	Watermelon (97103) v2	cpiwmbB067
CSPI01G17720	Wax gourd	cpiwgoB076
CSPI01G17720	Wax gourd	cpiwgoB099
CSPI01G17720	Wild cucumber (PI 183967)	cpicpiB027
CSPI01G17720	Cucumber (Gy14) v1	cgycpiB100
CSPI01G17720	Cucumber (Gy14) v1	cgycpiB407
CSPI01G17720	Cucurbita maxima (Rimu)	cmacpiB059
CSPI01G17720	Cucurbita maxima (Rimu)	cmacpiB097
CSPI01G17720	Cucurbita moschata (Rifu)	cmocpiB051
CSPI01G17720	Cucurbita moschata (Rifu)	cmocpiB090
CSPI01G17720	Cucumber (Chinese Long) v2	cpicuB035
CSPI01G17720	Melon (DHL92) v3.5.1	cpimeB057
CSPI01G17720	Watermelon (Charleston Gray)	cpiwcgB070
CSPI01G17720	Watermelon (Charleston Gray)	cpiwcgB071
CSPI01G17720	Watermelon (97103) v1	cpiwmB086
CSPI01G17720	Cucurbita pepo (Zucchini)	cpecpiB351
CSPI01G17720	Cucurbita pepo (Zucchini)	cpecpiB640
CSPI01G17720	Bottle gourd (USVL1VR-Ls)	cpilsiB064
CSPI01G17720	Bottle gourd (USVL1VR-Ls)	cpilsiB075
CSPI01G17720	Melon (DHL92) v3.6.1	cpimedB051
CSPI01G17720	Melon (DHL92) v3.6.1	cpimedB072
CSPI01G17720	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G17720	Cucumber (Gy14) v2	cgybcpiB162
CSPI01G17720	Silver-seed gourd	carcpiB0138
CSPI01G17720	Silver-seed gourd	carcpiB0539