CsaV3_1G028990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15866218 .. 15866909 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCGTATAAAAAGGTGAAAATAATAAAAACAAACGGAAAGATTCAAAAATAAAAGAATCTCTCTTTTTGTTTAGATGGACTTTCTAACTGTTCATAAATATTTTTCTTTTACTTGTACACATTTATTTTAAACCGTTAGAAAGACAATTCAAACACGTTTTAGTCTAGGGATATATCTGTACGTGCGAGGATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGAGAAGCCCGTGGTACTGAAATTGGTTTGGGGGATTTGGAATTAGAACAAAGAGAGGAAGAAAAAGGGGTATTGGAGAAGAAAGCGGGAAGATGTGAGGATTTGGATTGAACAAATGGCAGTTACTTGTAGATTATGGCAGTTTAAAATGGCCTTCAAATCAGCCATTGGACTCGCTCTGTTTCTTTTCTTTGGATTTCTTCTTTCAATATTGTATGTTTTTTATTAGAAAAATATAAATGGTTTCCCACA

mRNA sequence

ATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Coding sequence (CDS)

ATGTGTGTGGTTGGGAGTAGAGATACCCGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Protein sequence

MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRRWHLLAVILSLPMLCSSSVFGFSL
Homology
[Close]
BLAST of CsaV3_1G028990 vs. NCBI nr
Match: KGN65164.1 (hypothetical protein Csa_1G256730 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.0e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

[Close]
BLAST of CsaV3_1G028990 vs. TrEMBL
Match: tr|A0A0A0LW11|A0A0A0LW11_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256730 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65164.12.0e-40100.00hypothetical protein Csa_1G256730 [Cucumis sativus][more]
BLAST of CsaV3_1G028990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LW11|A0A0A0LW11_CUCSA1.3e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256730 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028990.1CsaV3_1G028990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G028990CSPI01G17720Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G028990Cucumber (Chinese Long) v3cuccucB032
CsaV3_1G028990Silver-seed gourdcarcucB0142
CsaV3_1G028990Silver-seed gourdcarcucB0537
CsaV3_1G028990Cucumber (Gy14) v2cgybcucB001
CsaV3_1G028990Cucumber (Gy14) v2cgybcucB165
CsaV3_1G028990Cucumber (Gy14) v1cgycucB100
CsaV3_1G028990Cucumber (Gy14) v1cgycucB413
CsaV3_1G028990Cucurbita maxima (Rimu)cmacucB0012
CsaV3_1G028990Cucurbita maxima (Rimu)cmacucB0067
CsaV3_1G028990Cucurbita maxima (Rimu)cmacucB0111
CsaV3_1G028990Cucurbita maxima (Rimu)cmacucB0517
CsaV3_1G028990Cucurbita moschata (Rifu)cmocucB0001
CsaV3_1G028990Cucurbita moschata (Rifu)cmocucB0054
CsaV3_1G028990Cucurbita moschata (Rifu)cmocucB0100
CsaV3_1G028990Cucurbita pepo (Zucchini)cpecucB0429
CsaV3_1G028990Cucurbita pepo (Zucchini)cpecucB0670
CsaV3_1G028990Cucurbita pepo (Zucchini)cpecucB0796
CsaV3_1G028990Cucurbita pepo (Zucchini)cpecucB0954
CsaV3_1G028990Wild cucumber (PI 183967)cpicucB204
CsaV3_1G028990Bottle gourd (USVL1VR-Ls)cuclsiB074
CsaV3_1G028990Bottle gourd (USVL1VR-Ls)cuclsiB085
CsaV3_1G028990Melon (DHL92) v3.5.1cucmeB054
CsaV3_1G028990Melon (DHL92) v3.5.1cucmeB086
CsaV3_1G028990Melon (DHL92) v3.6.1cucmedB052
CsaV3_1G028990Melon (DHL92) v3.6.1cucmedB081
CsaV3_1G028990Watermelon (Charleston Gray)cucwcgB073
CsaV3_1G028990Watermelon (Charleston Gray)cucwcgB074
CsaV3_1G028990Watermelon (97103) v1cucwmB047
CsaV3_1G028990Watermelon (97103) v1cucwmB091
CsaV3_1G028990Watermelon (97103) v2cucwmbB062
CsaV3_1G028990Watermelon (97103) v2cucwmbB063
CsaV3_1G028990Wax gourdcucwgoB081
CsaV3_1G028990Wax gourdcucwgoB104