Csa1G202290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G202290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTransmembrane protein 234 homolog; contains IPR018908 (Uncharacterised protein family UPF0546)
LocationChr1 : 11580665 .. 11581527 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAAAAGAGAGAGCGAGAGAGAGAGTGAGGGAAAAATGATGATAGGAGATGTAGAAAAAATGGTTGCTATCGGTCTCGTTTGGGGCGCCACCAATGTTCTGATGCGCCGCGGCGCTCTTCTCTGGGACCAAGCTCTCAAATCTTCCTCTGATTCAACTAAACCCTTTTCCTCCCTCCGTCGATGGCTCAAGCTCTTCTCTATTTGGCAGTACACTCTCCCTTTTTTTCTTAATCTCACTGCCTCTGCTACCTTCTTCACCATTCTAAGCCATGCCCCAATATCTCTCGCCGTTCCGGTCACCAACGCTACTACTTTTGCTGCCACTGCTGTTTTCGGAATGCTCCTTGGCGAGGCCACTCGTGTCGGGTACGCTCTGTTTGGTACCACTCTCATTGGTTTCGGCGTATGGCTTTGCATTAACTAATGCTGATTTCTCAATCGCAGAATTTAGGTTTTCTTGTAATTTTTCTCTTTCTAGAGATGTATGATATGAATCTGTCCAAAGTAGCCCTGCTGAATTTTACTCTGACATTAACTGTAGTGAAATTGGGATGTGTTTAGTCTCTTCAAATTCGAAAATGATTTGTTTAATGCACTGAAAGAGAGCTGGTTGTTTTGATGACGGGTCGAAGAATTAGAAACTTGAGAGGATGGACATGGTTGTGAGTTCCTATGCCAACTTTCTATCCAACTCTTTTTATCTACTTGGCTTTGTGTTTGGTCTCTATACCTATCATGTACATTGGTAGCAAAAGTGGATCTTAGTCTCTTGTTAGGGTTAGGCGTTTGAAAGAGCACAGATAGGTGCAAATTGGCCATTGGAAGGGCGTTTGGAACATTGAGTTGATTTTTATAGT

mRNA sequence

ATGATGATAGGAGATGTAGAAAAAATGGTTGCTATCGGTCTCGTTTGGGGCGCCACCAATGTTCTGATGCGCCGCGGCGCTCTTCTCTGGGACCAAGCTCTCAAATCTTCCTCTGATTCAACTAAACCCTTTTCCTCCCTCCGTCGATGGCTCAAGCTCTTCTCTATTTGGCAGTACACTCTCCCTTTTTTTCTTAATCTCACTGCCTCTGCTACCTTCTTCACCATTCTAAGCCATGCCCCAATATCTCTCGCCGTTCCGGTCACCAACGCTACTACTTTTGCTGCCACTGCTGTTTTCGGAATGCTCCTTGGCGAGGCCACTCGTGTCGGGTACGCTCTGTTTGGTACCACTCTCATTGGTTTCGGCGTATGGCTTTGCATTAACTAA

Coding sequence (CDS)

ATGATGATAGGAGATGTAGAAAAAATGGTTGCTATCGGTCTCGTTTGGGGCGCCACCAATGTTCTGATGCGCCGCGGCGCTCTTCTCTGGGACCAAGCTCTCAAATCTTCCTCTGATTCAACTAAACCCTTTTCCTCCCTCCGTCGATGGCTCAAGCTCTTCTCTATTTGGCAGTACACTCTCCCTTTTTTTCTTAATCTCACTGCCTCTGCTACCTTCTTCACCATTCTAAGCCATGCCCCAATATCTCTCGCCGTTCCGGTCACCAACGCTACTACTTTTGCTGCCACTGCTGTTTTCGGAATGCTCCTTGGCGAGGCCACTCGTGTCGGGTACGCTCTGTTTGGTACCACTCTCATTGGTTTCGGCGTATGGCTTTGCATTAACTAA

Protein sequence

MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLIGFGVWLCIN*
Homology
[Close]
BLAST of Csa1G202290 vs. Swiss-Prot
Match: TM234_DICDI (Transmembrane protein 234 homolog OS=Dictyostelium discoideum GN=DDB_G0277575 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.3e-13
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 1 

Query: 5   DVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYTLPFF 64
           ++  ++ +G +WG TN L++RG+    +  K +  S   +  +  W +      YT+P  
Sbjct: 5   NIISLLLVGFIWGGTNPLIKRGSEGVSKVKKDNFLSQIIYEFVYLWTRP----SYTIPML 64

Query: 65  LNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLIGFGV 124
           +NL+ S  FF  LS   ISL VP++N+ TF  T++ GMLLGE      +  G   +  GV
Sbjct: 65  INLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGMIFVLAGV 124

Query: 125 WLCIN 130
            +C++
Sbjct: 125 TICVS 125

[Close]
BLAST of Csa1G202290 vs. Swiss-Prot
Match: TM234_ANOGA (Transmembrane protein 234 homolog OS=Anopheles gambiae GN=AGAP012180 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 39/122 (31.97%), Postives = 62/122 (50.82%), Query Frame = 1 

Query: 6   VEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYTLPFFL 65
           V  ++ + ++WGATN  ++RG++ +++ LK+ S   + +  +R    L + WQY LP  +
Sbjct: 17  VLSILLVAIMWGATNPFIKRGSIGYNE-LKADSKLGQLWLEVRF---LITRWQYLLPLVI 76

Query: 66  NLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLIGFGVW 125
           N   S  +   L    +SL VP+ N+ TF  TA+   LLGE         G TL+  G  
Sbjct: 77  NQLGSIVYVLTLQRTELSLTVPMANSLTFVFTAITARLLGERQSGWKIYCGMTLVILGTV 134

Query: 126 LC 128
           +C
Sbjct: 137 IC 134

[Close]
BLAST of Csa1G202290 vs. Swiss-Prot
Match: TM234_BOVIN (Transmembrane protein 234 OS=Bos taurus GN=TMEM234 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 37/126 (29.37%), Postives = 58/126 (46.03%), Query Frame = 1 

Query: 3   IGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYTLP 62
           +G V  +V +  +WG T  L++R +      L+   + T     L+    LF   +Y +P
Sbjct: 5   LGQVLALVLVAALWGGTQPLLKRAS----SRLQQVHERTWARQLLQEMKTLFLNPEYLMP 64

Query: 63  FFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLIGF 122
           F LN   S  ++  L+   ++LAVP++N+     T + G +LGE      A  G  L   
Sbjct: 65  FSLNQCGSLLYYLTLASTDLTLAVPISNSLAIIFTLIVGKVLGEDIGGKRAFAGMVLTVA 124

Query: 123 GVWLCI 129
           G+ LCI
Sbjct: 125 GITLCI 126

[Close]
BLAST of Csa1G202290 vs. TrEMBL
Match: A0A0A0LT65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G202290 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYT 60
           MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYT
Sbjct: 1   MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYT 60

Query: 61  LPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLI 120
           LPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLI
Sbjct: 61  LPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLI 120

Query: 121 GFGVWLCIN 130
           GFGVWLCIN
Sbjct: 121 GFGVWLCIN 129

[Close]
BLAST of Csa1G202290 vs. TrEMBL
Match: M5VRJ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013135mg PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48
Identity = 100/137 (72.99%), Postives = 111/137 (81.02%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDST----------KPFSSLRRWL 61
           MIGDVEKM+A+GLVWGATN LMRRGALLWDQALKSSS +           K  +S++ WL
Sbjct: 1   MIGDVEKMIAVGLVWGATNALMRRGALLWDQALKSSSSAQAQAQPGRIHHKLLTSIKSWL 60

Query: 62  KLFSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVG 121
           KL SIWQYT+PFF+NL+ASATFF ILSH PISLAVPVTNATTFAATAVFG LLGE T +G
Sbjct: 61  KLLSIWQYTVPFFVNLSASATFFAILSHTPISLAVPVTNATTFAATAVFGWLLGEQTHLG 120

Query: 122 YALFGTTLIGFGVWLCI 129
            ALFGT LI  G+WLCI
Sbjct: 121 LALFGTALIVLGIWLCI 137

[Close]
BLAST of Csa1G202290 vs. TrEMBL
Match: V4WDB9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009852mg PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-44
Identity = 93/136 (68.38%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDST--------KPFSSLRRWLKL 61
           M GDVEKM+A+GLVWGATN LMRRGALLWDQ+++  S  +        K F+SL+ WL L
Sbjct: 1   MNGDVEKMIAVGLVWGATNALMRRGALLWDQSVRRLSTPSSSSLKLHQKLFASLKNWLAL 60

Query: 62  FSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYA 121
             IWQYT+PF LNL+ASATFF ILSH PISLAVPVTNATTFAATA FG+LLGE TRVG++
Sbjct: 61  LVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFS 120

Query: 122 LFGTTLIGFGVWLCIN 130
           L G   I  GVWLCIN
Sbjct: 121 LLGMASIVLGVWLCIN 136

[Close]
BLAST of Csa1G202290 vs. TrEMBL
Match: A0A061GMI4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037830 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-43
Identity = 93/135 (68.89%), Postives = 103/135 (76.30%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKP--------FSSLRRWLKL 61
           MIG VEKM+A+GL+WGATN  MRRGALLWDQ+LKS+     P          SL  WL L
Sbjct: 1   MIGGVEKMLAVGLIWGATNAAMRRGALLWDQSLKSTPPPRDPPHKLHQKLLDSLSNWLTL 60

Query: 62  FSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYA 121
              WQY+LPF +NL+ASATFFTILS APISLAVPVTNATTFAATAVFG+LLGE TRVG+A
Sbjct: 61  LFFWQYSLPFLINLSASATFFTILSQAPISLAVPVTNATTFAATAVFGILLGEETRVGHA 120

Query: 122 LFGTTLIGFGVWLCI 129
           L GT  I  GVWLCI
Sbjct: 121 LLGTGFIVLGVWLCI 135

[Close]
BLAST of Csa1G202290 vs. TrEMBL
Match: M1C7S6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023982 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 88/131 (67.18%), Postives = 105/131 (80.15%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKP----FSSLRRWLKLFSIW 61
           MIG+VEKM+ +GLVWGATN LMR+GA+ WD+ +KS      P     ++L+ WLKL  IW
Sbjct: 1   MIGEVEKMITVGLVWGATNALMRKGAIKWDETIKSLPQPNTPQHPVLTTLQNWLKLLLIW 60

Query: 62  QYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGT 121
           QY+LPF LNL+ASATFF ILS  PISLAVPVTNATTFAATAVFG++LGE TRVG ALFGT
Sbjct: 61  QYSLPFLLNLSASATFFAILSDTPISLAVPVTNATTFAATAVFGLILGEETRVGLALFGT 120

Query: 122 TLIGFGVWLCI 129
           +LI  GV++CI
Sbjct: 121 SLIVLGVYICI 131

[Close]
BLAST of Csa1G202290 vs. TAIR10
Match: AT5G19570.1 (AT5G19570.1 unknown protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-42
Identity = 81/133 (60.90%), Postives = 99/133 (74.44%), Query Frame = 1 

Query: 5   DVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDST---------KPFSSLRRWLKLFS 64
           D++KMVA+GLVWGATN L+RRGAL WD+   SS+  +         K   +LR W+ L  
Sbjct: 4   DMDKMVAVGLVWGATNALIRRGALAWDKTKSSSTTESHSPPLQIRRKIMIALRDWINLLL 63

Query: 65  IWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALF 124
            WQY++PF +NL+ASATFF +LSHAPISLAVPVTNATTFAATA FG+LLGE T++G AL 
Sbjct: 64  FWQYSIPFLINLSASATFFALLSHAPISLAVPVTNATTFAATAAFGILLGEETQIGLALL 123

Query: 125 GTTLIGFGVWLCI 129
           GT+ I FG+WLC+
Sbjct: 124 GTSFIVFGIWLCV 136

[Close]
BLAST of Csa1G202290 vs. NCBI nr
Match: gi|449465679|ref|XP_004150555.1| (PREDICTED: transmembrane protein 234 homolog [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYT 60
           MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYT
Sbjct: 1   MMIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYT 60

Query: 61  LPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLI 120
           LPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLI
Sbjct: 61  LPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALFGTTLI 120

Query: 121 GFGVWLCIN 130
           GFGVWLCIN
Sbjct: 121 GFGVWLCIN 129

[Close]
BLAST of Csa1G202290 vs. NCBI nr
Match: gi|659125569|ref|XP_008462752.1| (PREDICTED: transmembrane protein 234 homolog [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 5.0e-50
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDSTKPFSSLRRWLKLFSIWQYTL 61
           MIGDVEKMVAIGLVWGATN LMRRGALLWDQAL+SSSDSTKPFSSLRRWLKLFSIWQYTL
Sbjct: 11  MIGDVEKMVAIGLVWGATNALMRRGALLWDQALQSSSDSTKPFSSLRRWLKLFSIWQYTL 70

Query: 62  PFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYA 114
           PF LNLTASATFF ILS APISLAVPVTNATTFAATAVFG+LLGE TRVG A
Sbjct: 71  PFLLNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGVLLGEDTRVGLA 122

[Close]
BLAST of Csa1G202290 vs. NCBI nr
Match: gi|470102004|ref|XP_004287449.1| (PREDICTED: transmembrane protein 234 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 201.8 bits (512), Expect = 7.2e-49
Identity = 99/133 (74.44%), Postives = 110/133 (82.71%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDS------TKPFSSLRRWLKLFS 61
           M+GDVEKM+ +GLVWGATN LMRRGALLWDQALKSSS         K  +SL+ WLKL S
Sbjct: 1   MVGDVEKMIGVGLVWGATNALMRRGALLWDQALKSSSSQQNTAHGNKLLTSLKSWLKLLS 60

Query: 62  IWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVGYALF 121
           IWQYT+PFF+NL+ASATFF ILSH PISLAVPVTNATTFAATAVFG+LLGE T +G ALF
Sbjct: 61  IWQYTIPFFVNLSASATFFAILSHTPISLAVPVTNATTFAATAVFGLLLGEQTHLGLALF 120

Query: 122 GTTLIGFGVWLCI 129
           GT LI  G+WLCI
Sbjct: 121 GTALIVLGIWLCI 133

[Close]
BLAST of Csa1G202290 vs. NCBI nr
Match: gi|645274908|ref|XP_008242562.1| (PREDICTED: transmembrane protein 234 homolog [Prunus mume])

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-48
Identity = 101/137 (73.72%), Postives = 111/137 (81.02%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDST----------KPFSSLRRWL 61
           MIGDVEKM+A+GLVWGATN LMRRGALLWDQALKSSS +           K  +SL+ WL
Sbjct: 1   MIGDVEKMIAVGLVWGATNALMRRGALLWDQALKSSSSAQAQAQPGRIHHKLLTSLKSWL 60

Query: 62  KLFSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVG 121
           KL SIWQYT+PFF+NL+ASATFF ILSH PISLAVPVTNATTFAATAVFG LLGE T +G
Sbjct: 61  KLLSIWQYTVPFFVNLSASATFFAILSHTPISLAVPVTNATTFAATAVFGWLLGEQTHLG 120

Query: 122 YALFGTTLIGFGVWLCI 129
            ALFGT LI  G+WLCI
Sbjct: 121 LALFGTALIVLGIWLCI 137

[Close]
BLAST of Csa1G202290 vs. NCBI nr
Match: gi|595808222|ref|XP_007202735.1| (hypothetical protein PRUPE_ppa013135mg [Prunus persica])

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-48
Identity = 100/137 (72.99%), Postives = 111/137 (81.02%), Query Frame = 1 

Query: 2   MIGDVEKMVAIGLVWGATNVLMRRGALLWDQALKSSSDST----------KPFSSLRRWL 61
           MIGDVEKM+A+GLVWGATN LMRRGALLWDQALKSSS +           K  +S++ WL
Sbjct: 1   MIGDVEKMIAVGLVWGATNALMRRGALLWDQALKSSSSAQAQAQPGRIHHKLLTSIKSWL 60

Query: 62  KLFSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFGMLLGEATRVG 121
           KL SIWQYT+PFF+NL+ASATFF ILSH PISLAVPVTNATTFAATAVFG LLGE T +G
Sbjct: 61  KLLSIWQYTVPFFVNLSASATFFAILSHTPISLAVPVTNATTFAATAVFGWLLGEQTHLG 120

Query: 122 YALFGTTLIGFGVWLCI 129
            ALFGT LI  G+WLCI
Sbjct: 121 LALFGTALIVLGIWLCI 137

The following BLAST results are available for this feature:
BLAST of Csa1G202290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TM234_DICDI8.3e-1332.00Transmembrane protein 234 homolog OS=Dictyostelium discoideum GN=DDB_G0277575 PE... [more]
TM234_ANOGA1.7e-1031.97Transmembrane protein 234 homolog OS=Anopheles gambiae GN=AGAP012180 PE=3 SV=1[more]
TM234_BOVIN1.6e-0829.37Transmembrane protein 234 OS=Bos taurus GN=TMEM234 PE=2 SV=1[more]
BLAST of Csa1G202290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT65_CUCSA1.5e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G202290 PE=4 SV=1[more]
M5VRJ9_PRUPE1.9e-4872.99Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013135mg PE=4 SV=1[more]
V4WDB9_9ROSI2.8e-4468.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009852mg PE=4 SV=1[more]
A0A061GMI4_THECC1.8e-4368.89Uncharacterized protein OS=Theobroma cacao GN=TCM_037830 PE=4 SV=1[more]
M1C7S6_SOLTU1.2e-4267.18Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023982 PE=4 SV=1[more]
BLAST of Csa1G202290 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19570.11.1e-4260.90 unknown protein[more]
BLAST of Csa1G202290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465679|ref|XP_004150555.1|2.2e-66100.00PREDICTED: transmembrane protein 234 homolog [Cucumis sativus][more]
gi|659125569|ref|XP_008462752.1|5.0e-5092.86PREDICTED: transmembrane protein 234 homolog [Cucumis melo][more]
gi|470102004|ref|XP_004287449.1|7.2e-4974.44PREDICTED: transmembrane protein 234 homolog [Fragaria vesca subsp. vesca][more]
gi|645274908|ref|XP_008242562.1|1.6e-4873.72PREDICTED: transmembrane protein 234 homolog [Prunus mume][more]
gi|595808222|ref|XP_007202735.1|2.7e-4872.99hypothetical protein PRUPE_ppa013135mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018908TMEM234
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095500cucumber EST collection version 3.0transcribed_cluster
CU109021cucumber EST collection version 3.0transcribed_cluster
CU135820cucumber EST collection version 3.0transcribed_cluster
CU142068cucumber EST collection version 3.0transcribed_cluster
CU163367cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G202290.1Csa1G202290.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095500CU095500transcribed_cluster
CU142068CU142068transcribed_cluster
CU135820CU135820transcribed_cluster
CU109021CU109021transcribed_cluster
CU163367CU163367transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018908Putative transmembrane family 234PFAMPF10639TMEM234coord: 9..128
score: 1.5
NoneNo IPR availablePANTHERPTHR28668FAMILY NOT NAMEDcoord: 1..129
score: 3.1
NoneNo IPR availablePANTHERPTHR28668:SF1TRANSMEMBRANE PROTEIN 234coord: 1..129
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G202290ClCG06G008870Watermelon (Charleston Gray)cuwcgB086
Csa1G202290Lsi06G008420Bottle gourd (USVL1VR-Ls)culsiB069
Csa1G202290Bhi02G000972Wax gourdcuwgoB091
Csa1G202290CSPI01G16350Wild cucumber (PI 183967)cpicuB000
Csa1G202290CsGy5G012930Cucumber (Gy14) v2cgybcuB198
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None