Csa1G181400 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G181400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription factor MADS box; contains IPR002100 (Transcription factor, MADS-box)
LocationChr1 : 11024946 .. 11025554 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATCTTCAGGGCGTCGAAAGATTGAGATCAAAAGGCTTGACAAGAACACTACACGCCAGGTTACTTTCTCAAAACGTCGCGTCGGACTTTTCAACAAGGCAGCCGAGCTTTCCCTTCTCTGCGGCGCTGAGATCGCCATACTCCTCTTCTCCTCCCGCGGAAAAGTCTATACATTCGGCCATCCCAACGTCGACGCTCTCCTCGACCGCTTTCTCACTGGAAACTTTCTTCCGCCCAAGCCGGCGGAGGCGTATCTCCCTCTCCCGGAGTTGAATCTTGATCTCTGCAAAGCGGAAGCCGAATTTGAAATCGAGAAGAAGCGCGCGGTGGAGAGATTGAGGAATAGCGAGCGATTTTGGTGGGATGAGGCGCTGGAACGTATGAGAATGGATGAGTTGAAGTCATTCCGTTCTTCACTGCTCCAACTGAGAGCAAATGTGGCGGGGAGATTGGAGAAAATTCGGGCGATGAGAATGGAAGATCCTCCGGTAACTCCATCGTGGTCGATCGTTCTTGGTGGAGAAAATCAATGTGCGGCGTCGTTTCACGTGGGTGAAAATCAGTCGTTTGCGATGGATTGGGAAGAGGAGATTTGGGGTTAG

mRNA sequence

ATGAAGAAATCTTCAGGGCGTCGAAAGATTGAGATCAAAAGGCTTGACAAGAACACTACACGCCAGGTTACTTTCTCAAAACGTCGCGTCGGACTTTTCAACAAGGCAGCCGAGCTTTCCCTTCTCTGCGGCGCTGAGATCGCCATACTCCTCTTCTCCTCCCGCGGAAAAGTCTATACATTCGGCCATCCCAACGTCGACGCTCTCCTCGACCGCTTTCTCACTGGAAACTTTCTTCCGCCCAAGCCGGCGGAGGCGTATCTCCCTCTCCCGGAGTTGAATCTTGATCTCTGCAAAGCGGAAGCCGAATTTGAAATCGAGAAGAAGCGCGCGGTGGAGAGATTGAGGAATAGCGAGCGATTTTGGTGGGATGAGGCGCTGGAACGTATGAGAATGGATGAGTTGAAGTCATTCCGTTCTTCACTGCTCCAACTGAGAGCAAATGTGGCGGGGAGATTGGAGAAAATTCGGGCGATGAGAATGGAAGATCCTCCGGTAACTCCATCGTGGTCGATCGTTCTTGGTGGAGAAAATCAATGTGCGGCGTCGTTTCACGTGGGTGAAAATCAGTCGTTTGCGATGGATTGGGAAGAGGAGATTTGGGGTTAG

Coding sequence (CDS)

ATGAAGAAATCTTCAGGGCGTCGAAAGATTGAGATCAAAAGGCTTGACAAGAACACTACACGCCAGGTTACTTTCTCAAAACGTCGCGTCGGACTTTTCAACAAGGCAGCCGAGCTTTCCCTTCTCTGCGGCGCTGAGATCGCCATACTCCTCTTCTCCTCCCGCGGAAAAGTCTATACATTCGGCCATCCCAACGTCGACGCTCTCCTCGACCGCTTTCTCACTGGAAACTTTCTTCCGCCCAAGCCGGCGGAGGCGTATCTCCCTCTCCCGGAGTTGAATCTTGATCTCTGCAAAGCGGAAGCCGAATTTGAAATCGAGAAGAAGCGCGCGGTGGAGAGATTGAGGAATAGCGAGCGATTTTGGTGGGATGAGGCGCTGGAACGTATGAGAATGGATGAGTTGAAGTCATTCCGTTCTTCACTGCTCCAACTGAGAGCAAATGTGGCGGGGAGATTGGAGAAAATTCGGGCGATGAGAATGGAAGATCCTCCGGTAACTCCATCGTGGTCGATCGTTCTTGGTGGAGAAAATCAATGTGCGGCGTCGTTTCACGTGGGTGAAAATCAGTCGTTTGCGATGGATTGGGAAGAGGAGATTTGGGGTTAG

Protein sequence

MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTFGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQCAASFHVGENQSFAMDWEEEIWG*
Homology
[Close]
BLAST of Csa1G181400 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.2e-27
Identity = 64/159 (40.25%), Postives = 97/159 (61.01%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           +KKS GR+KIE+ ++   +  QVTFSKRR GLF KA+EL  LCGAE+AI++FS   KV++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDALLDRFLTGNFLPP--------KPAEAYLPLPELNLDLCKAEAEFEIEKKRAV 120
           FGHPNVD+++DRF+  N LPP        +       + +LN  L +  ++ E EKK+  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ERLRNSERF-----WWDEALERMRMDELKSFRSSLLQLR 147
           E  +  E+      WW++ +E + + +L+ F+ +L  L+
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLK 160

[Close]
BLAST of Csa1G181400 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.6e-25
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 1 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           K+S GR+KI + ++ K + RQVTFSKRR GLF KA+EL  LCGAEI I++FS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLPLP----ELNLDLCKAEAEFEIEKKRA------ 121
           GHP+V+++LDR+++ N +    ++     P    ELN+ L    +E E EKK+       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 -VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANV 150
             E +R S   WW++ +E M M +L+  + +L +LR  V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of Csa1G181400 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = 1 

Query: 6   GRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTFGHPN 65
           GRRKI+++ +    TRQVTFSKRR GLF KA+EL+ LC AE+ I++FS  GK +++G PN
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VDALLDRFL-------------TGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEK-KRA 125
           +D++ +RF+             +GN+ P       L      LDL   E E E E+ +++
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYRPK------LKRLSERLDLLNQEVEAEKERGEKS 121

Query: 126 VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRA 159
            E+L ++    + E++E + +DEL  ++  L  +   + G++  ++A
Sbjct: 122 QEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]
BLAST of Csa1G181400 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           +KK+ GRRK+EI ++ K +  QVTFSKR+ GLF KA+E   LC A+IA+++FS  GKV++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVDALLDRF----LTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLR 120
           FGHPNVD LLD F    +  N      +   L +  LN    + +AE E E+K    R +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 N-----SERFWWDEA 127
           N     +   WW ++
Sbjct: 122 NERENENAEEWWSKS 136

[Close]
BLAST of Csa1G181400 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.9e-20
Identity = 62/164 (37.80%), Postives = 88/164 (53.66%), Query Frame = 1 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           +K+ GRRKIE+ ++   +  QVTFSKRR GLF K +EL  LC AEIAI++FS  GK Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVDALLD----RFLTGNFLPPKPAEAYLPLPELNLDLCK--AEAEFEIEKKRAV--- 121
           GHPNV+ LLD    R +  N      +   L +  LN  L +  AE E E E K+++   
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 122 ERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKI 157
           ER       WW  +   + + +  S +  L  L+  V  ++ ++
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

[Close]
BLAST of Csa1G181400 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 7.2e-111
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180
           FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180

Query: 181 AASFHVGENQSFAMDWEEEIWG 203
           AASFHVGENQSFAMDWEEEIWG
Sbjct: 181 AASFHVGENQSFAMDWEEEIWG 202

[Close]
BLAST of Csa1G181400 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.2e-53
Identity = 109/160 (68.12%), Postives = 131/160 (81.88%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GR+KIEIK+L+  + RQVTFSKRR GLFNKAAELS+L GAEIAIL+FSS  K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVD L+DRFLT NF+PPKP EAYLPL ELN DL    AEFE EK+RA ER+R +  
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRA-ERMRKTGG 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMR 161
           FWWDEA+E M +++LK FRSSL++LR  VA R+E++ A+R
Sbjct: 121 FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVR 159

[Close]
BLAST of Csa1G181400 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-50
Identity = 108/211 (51.18%), Postives = 144/211 (68.25%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKK+ GR+KIEIK+L+K +++QVTFSKRR GLF KA ELS+LCGAE+AI++FS   K++ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSE- 120
           FGHP+VD LLDR+LTGN  PPKPAE+Y+P+ E N D      EFE EKKRA E +R +E 
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 -----RFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDP---------- 180
                 FWW EA+E +R++ELK FRS+L+ LRA VA R+EK+ A+R+  P          
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

Query: 181 PVTPSWSIVLGGENQC--AASFHVGENQSFA 194
           P+T S   ++G   +     +FH+  NQ  A
Sbjct: 189 PMTSSSFHLIGNHQELPPPTAFHLAGNQRVA 219

[Close]
BLAST of Csa1G181400 vs. TrEMBL
Match: W9QW40_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002949 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.7e-32
Identity = 76/172 (44.19%), Postives = 111/172 (64.53%), Query Frame = 1 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           KK+ GR++IEIK+L+  + +QVTFSKRR GLF KAAELS+LCG+E+A L+FS  GK++TF
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFRKAAELSVLCGSEVAALVFSPNGKLFTF 70

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLP------LPELNLDLCKAEAEFEIEKKRAVERL 121
           GHP+VD+++ R+  G    P  A +           E N D  +A  E E EK R  E  
Sbjct: 71  GHPSVDSVVLRYAHGTNTAPAAAASTSTNVVTNVSEEFNRDYVEAVKELEAEKTRLAEEK 130

Query: 122 RNS----ERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMED 164
           + +    E+FWWDE +E M M+EL+   ++L++LR  VA R++ ++A   E+
Sbjct: 131 KKAKIGGEKFWWDEGIEGMGMEELRQHMAALIELRRRVAARVQGLKAAPPEN 182

[Close]
BLAST of Csa1G181400 vs. TrEMBL
Match: W9R6M2_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002953 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 74/173 (42.77%), Postives = 108/173 (62.43%), Query Frame = 1 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           KK+ GR++IEIK+L+  + +QVTFSKRR GLF KAAELS+LCG+E+A L+FS   K++ F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNSKLFAF 70

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLP-------LPELNLDLCKAEAEFEIEKKRAVER 121
           GHP+VD+++ R+  G       A A            E N D  +A  E E EK R  E 
Sbjct: 71  GHPSVDSIVLRYAHGTNTAAAAAAASTSTNVVTNVFEEFNRDYVEAVKELEAEKTRLAEE 130

Query: 122 LR----NSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMED 164
            +      E+FWWDE +E M M+EL+   ++L++LR  VA R+++++A   E+
Sbjct: 131 KKKEKIGGEKFWWDEGIEGMGMEELRQHMAALIELRRRVAARVQELKAAPPEN 183

[Close]
BLAST of Csa1G181400 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-28
Identity = 64/159 (40.25%), Postives = 97/159 (61.01%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           +KKS GR+KIE+ ++   +  QVTFSKRR GLF KA+EL  LCGAE+AI++FS   KV++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDALLDRFLTGNFLPP--------KPAEAYLPLPELNLDLCKAEAEFEIEKKRAV 120
           FGHPNVD+++DRF+  N LPP        +       + +LN  L +  ++ E EKK+  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ERLRNSERF-----WWDEALERMRMDELKSFRSSLLQLR 147
           E  +  E+      WW++ +E + + +L+ F+ +L  L+
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLK 160

[Close]
BLAST of Csa1G181400 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-26
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 1 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           K+S GR+KI + ++ K + RQVTFSKRR GLF KA+EL  LCGAEI I++FS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLPLP----ELNLDLCKAEAEFEIEKKRA------ 121
           GHP+V+++LDR+++ N +    ++     P    ELN+ L    +E E EKK+       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 -VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANV 150
             E +R S   WW++ +E M M +L+  + +L +LR  V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of Csa1G181400 vs. TAIR10
Match: AT1G17310.1 (AT1G17310.1 MADS-box transcription factor family protein)

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-22
Identity = 64/175 (36.57%), Postives = 95/175 (54.29%), Query Frame = 1 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           K + GR+KIEIK++++ T RQVTFSKRR GLF K+AELS+L GA+IA++ FS   ++Y F
Sbjct: 44  KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSERF 121
           GH  VDAL+D++L  +   P   E Y                       A +    S R 
Sbjct: 104 GH--VDALIDKYLRKS---PVKLEGY-------------------SGDNAAD--EESRRP 163

Query: 122 WWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGG 177
           WW+  +E +  +EL+ + ++L  LR N+  ++  +   R  D  + P+W I + G
Sbjct: 164 WWERPVESVPEEELEEYMAALSMLRENIGKKIVAMGNDRTVD--MVPAWPINVMG 190

[Close]
BLAST of Csa1G181400 vs. TAIR10
Match: AT2G34440.1 (AT2G34440.1 AGAMOUS-like 29)

HSP 1 Score: 101.3 bits (251), Expect = 7.3e-22
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = 1 

Query: 6   GRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTFGHPN 65
           GRRKI+++ +    TRQVTFSKRR GLF KA+EL+ LC AE+ I++FS  GK +++G PN
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VDALLDRFL-------------TGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEK-KRA 125
           +D++ +RF+             +GN+ P       L      LDL   E E E E+ +++
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYRPK------LKRLSERLDLLNQEVEAEKERGEKS 121

Query: 126 VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRA 159
            E+L ++    + E++E + +DEL  ++  L  +   + G++  ++A
Sbjct: 122 QEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]
BLAST of Csa1G181400 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-21
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           +KK+ GRRK+EI ++ K +  QVTFSKR+ GLF KA+E   LC A+IA+++FS  GKV++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVDALLDRF----LTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLR 120
           FGHPNVD LLD F    +  N      +   L +  LN    + +AE E E+K    R +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 N-----SERFWWDEA 127
           N     +   WW ++
Sbjct: 122 NERENENAEEWWSKS 136

[Close]
BLAST of Csa1G181400 vs. NCBI nr
Match: gi|449443690|ref|XP_004139610.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 407.9 bits (1047), Expect = 1.0e-110
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180
           FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180

Query: 181 AASFHVGENQSFAMDWEEEIWG 203
           AASFHVGENQSFAMDWEEEIWG
Sbjct: 181 AASFHVGENQSFAMDWEEEIWG 202

[Close]
BLAST of Csa1G181400 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 8.2e-76
Identity = 149/212 (70.28%), Postives = 168/212 (79.25%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GRRKIEIK+LDK +T+QVTFSKRR GLFNKAAELS+LCGAEIA+L+FSSRGK+YT
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 61  FGHPNVDALLDRFLTG-NFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSE 120
           FGHPNVDALLDRFLTG N +PPKPAEAYLP+ ELN DL KAEAEFEIEK+RA ER RNSE
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 121 RFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSI------- 180
           RFWWDE LE M++DELK FRSSL++LRANV  RLEKI       P +  + SI       
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 181 --VLGGENQCAASFHVGENQSFAMDWEEEIWG 203
             +  G N C  SFH+ EN+S AMDWE EIWG
Sbjct: 181 IQLAAGNNHCLPSFHMAENRSVAMDWEAEIWG 212

[Close]
BLAST of Csa1G181400 vs. NCBI nr
Match: gi|659115872|ref|XP_008457781.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 5.2e-54
Identity = 115/171 (67.25%), Postives = 138/171 (80.70%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKSSGR+KIEIK+L+  + RQVTFSKRR GLFNKAAELS+L GAEIAIL+FSS GK+YT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVD L+DRFLT NF+P KPAEAYLPL ELN DL  A AEFEIEK RA ER+RN+  
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRA-ERMRNTGG 120

Query: 121 FWWDEA-LERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSW 171
           FWWDE  +E M ++ELK FRSSL++LR  VA ++E++ A+  E    +PS+
Sbjct: 121 FWWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAVNQEVLITSPSF 170

[Close]
BLAST of Csa1G181400 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 7.5e-53
Identity = 109/160 (68.12%), Postives = 131/160 (81.88%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GR+KIEIK+L+  + RQVTFSKRR GLFNKAAELS+L GAEIAIL+FSS  K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVD L+DRFLT NF+PPKP EAYLPL ELN DL    AEFE EK+RA ER+R +  
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRA-ERMRKTGG 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMR 161
           FWWDEA+E M +++LK FRSSL++LR  VA R+E++ A+R
Sbjct: 121 FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVR 159

[Close]
BLAST of Csa1G181400 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.6e-50
Identity = 108/211 (51.18%), Postives = 144/211 (68.25%), Query Frame = 1 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKK+ GR+KIEIK+L+K +++QVTFSKRR GLF KA ELS+LCGAE+AI++FS   K++ 
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSE- 120
           FGHP+VD LLDR+LTGN  PPKPAE+Y+P+ E N D      EFE EKKRA E +R +E 
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 121 -----RFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDP---------- 180
                 FWW EA+E +R++ELK FRS+L+ LRA VA R+EK+ A+R+  P          
Sbjct: 121 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 180

Query: 181 PVTPSWSIVLGGENQC--AASFHVGENQSFA 194
           P+T S   ++G   +     +FH+  NQ  A
Sbjct: 181 PMTSSSFHLIGNHQELPPPTAFHLAGNQRVA 211

The following BLAST results are available for this feature:
BLAST of Csa1G181400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL62_ARATH9.2e-2740.25Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH6.6e-2540.88Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL29_ARATH1.3e-2034.73Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1[more]
AGL23_ARATH2.9e-2041.48Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
AGL28_ARATH4.9e-2037.80Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1[more]
BLAST of Csa1G181400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW53_CUCSA7.2e-111100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1[more]
A0A0A0LLS2_CUCSA5.2e-5368.13Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1[more]
A0A0A0LE01_CUCSA1.1e-5051.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1[more]
W9QW40_9ROSA8.7e-3244.19Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002949 PE=4 SV=1[more]
W9R6M2_9ROSA1.6e-3042.77Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002953 PE=4 SV=1[more]
BLAST of Csa1G181400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.15.2e-2840.25 AGAMOUS-like 62[more]
AT2G24840.13.7e-2640.88 AGAMOUS-like 61[more]
AT1G17310.15.6e-2236.57 MADS-box transcription factor family protein[more]
AT2G34440.17.3e-2234.73 AGAMOUS-like 29[more]
AT1G65360.11.6e-2141.48 AGAMOUS-like 23[more]
BLAST of Csa1G181400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443690|ref|XP_004139610.1|1.0e-110100.00PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|659118116|ref|XP_008458954.1|8.2e-7670.28PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|659115872|ref|XP_008457781.1|5.2e-5467.25PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|449463992|ref|XP_004149713.1|7.5e-5368.13PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|778686644|ref|XP_004147877.2|1.6e-5051.18PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G181400.1Csa1G181400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 7..27
score: 4.9E-22coord: 42..63
score: 4.9E-22coord: 27..42
score: 4.9
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 17..61
score: 1.2
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 5..64
score: 8.0
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 5..65
score: 27
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 6..75
score: 7.98
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 6..179
score: 3.8