CsGy1G015390 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G015390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMADS box transcription factor
LocationChr1 : 11298844 .. 11299452 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATCTTCAGGGCGTCGAAAGATTGAGATCAAAAGGCTTGACAAGAACACTACACGCCAGGTTACTTTCTCAAAACGTCGCGTCGGACTTTTCAACAAGGCAGCCGAGCTTTCCCTTCTCTGCGGCGCTGAGATCGCCATACTCCTCTTCTCCTCCCGCGGAAAAGTCTATACATTCGGCCATCCCAACGTCGACGCTCTCCTCGACCGCTTTCTCACTGGAAACTTTCTTCCGCCCAAGCCGGCGGAGGCGTATCTCCCTCTCCCGGAGTTGAATCTTGATCTCTGCAAAGCGGAAGCCGAATTTGAAATCGAGAAGAAGCGCGCGGTGGAGAGATTGAGGAATAGCGAGCGATTTTGGTGGGATGAGGCGCTGGAACGTATGAGAATGGATGAGTTGAAGTCATTCCGTTCTTCACTGCTCCAACTGAGAGCAAATGTGGCGGGGAGATTGGAGAAAATTCGGGCGATGAGAATGGAAGATCCTCCGGTAACTCCATCGTGGTCGATCGTTCTTGGTGGAGAAAATCAATGTGCGGCGTCGTTTCACGTGGGTGAAAATCAGTCGTTTGCGATGGATTGGGAAGAGGAGATTTGGGGTTAG

mRNA sequence

ATGAAGAAATCTTCAGGGCGTCGAAAGATTGAGATCAAAAGGCTTGACAAGAACACTACACGCCAGGTTACTTTCTCAAAACGTCGCGTCGGACTTTTCAACAAGGCAGCCGAGCTTTCCCTTCTCTGCGGCGCTGAGATCGCCATACTCCTCTTCTCCTCCCGCGGAAAAGTCTATACATTCGGCCATCCCAACGTCGACGCTCTCCTCGACCGCTTTCTCACTGGAAACTTTCTTCCGCCCAAGCCGGCGGAGGCGTATCTCCCTCTCCCGGAGTTGAATCTTGATCTCTGCAAAGCGGAAGCCGAATTTGAAATCGAGAAGAAGCGCGCGGTGGAGAGATTGAGGAATAGCGAGCGATTTTGGTGGGATGAGGCGCTGGAACGTATGAGAATGGATGAGTTGAAGTCATTCCGTTCTTCACTGCTCCAACTGAGAGCAAATGTGGCGGGGAGATTGGAGAAAATTCGGGCGATGAGAATGGAAGATCCTCCGGTAACTCCATCGTGGTCGATCGTTCTTGGTGGAGAAAATCAATGTGCGGCGTCGTTTCACGTGGGTGAAAATCAGTCGTTTGCGATGGATTGGGAAGAGGAGATTTGGGGTTAG

Coding sequence (CDS)

ATGAAGAAATCTTCAGGGCGTCGAAAGATTGAGATCAAAAGGCTTGACAAGAACACTACACGCCAGGTTACTTTCTCAAAACGTCGCGTCGGACTTTTCAACAAGGCAGCCGAGCTTTCCCTTCTCTGCGGCGCTGAGATCGCCATACTCCTCTTCTCCTCCCGCGGAAAAGTCTATACATTCGGCCATCCCAACGTCGACGCTCTCCTCGACCGCTTTCTCACTGGAAACTTTCTTCCGCCCAAGCCGGCGGAGGCGTATCTCCCTCTCCCGGAGTTGAATCTTGATCTCTGCAAAGCGGAAGCCGAATTTGAAATCGAGAAGAAGCGCGCGGTGGAGAGATTGAGGAATAGCGAGCGATTTTGGTGGGATGAGGCGCTGGAACGTATGAGAATGGATGAGTTGAAGTCATTCCGTTCTTCACTGCTCCAACTGAGAGCAAATGTGGCGGGGAGATTGGAGAAAATTCGGGCGATGAGAATGGAAGATCCTCCGGTAACTCCATCGTGGTCGATCGTTCTTGGTGGAGAAAATCAATGTGCGGCGTCGTTTCACGTGGGTGAAAATCAGTCGTTTGCGATGGATTGGGAAGAGGAGATTTGGGGTTAG

Protein sequence

MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTFGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQCAASFHVGENQSFAMDWEEEIWG
Homology
[Close]
BLAST of CsGy1G015390 vs. NCBI nr
Match: XP_004139610.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN65027.1 hypothetical protein Csa_1G181400 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 6.4e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180
           FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180

Query: 181 AASFHVGENQSFAMDWEEEIWG 203
           AASFHVGENQSFAMDWEEEIWG
Sbjct: 181 AASFHVGENQSFAMDWEEEIWG 202

[Close]
BLAST of CsGy1G015390 vs. NCBI nr
Match: XP_008458954.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 5.1e-74
Identity = 149/212 (70.28%), Postives = 168/212 (79.25%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GRRKIEIK+LDK +T+QVTFSKRR GLFNKAAELS+LCGAEIA+L+FSSRGK+YT
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 61  FGHPNVDALLDRFLTG-NFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSE 120
           FGHPNVDALLDRFLTG N +PPKPAEAYLP+ ELN DL KAEAEFEIEK+RA ER RNSE
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 121 RFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSI------- 180
           RFWWDE LE M++DELK FRSSL++LRANV  RLEKI       P +  + SI       
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 181 --VLGGENQCAASFHVGENQSFAMDWEEEIWG 203
             +  G N C  SFH+ EN+S AMDWE EIWG
Sbjct: 181 IQLAAGNNHCLPSFHMAENRSVAMDWEAEIWG 212

[Close]
BLAST of CsGy1G015390 vs. NCBI nr
Match: XP_023512238.1 (agamous-like MADS-box protein AGL61 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 8.2e-56
Identity = 120/172 (69.77%), Postives = 138/172 (80.23%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LCGAEIAIL+ SSR K+YT
Sbjct: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNV++LLDRFLTGN  PPKPAEAYLPL ELN D     AE++IEK+R  ERL N +R
Sbjct: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSN-DR 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMED---PPVTPS 170
           FWWDE LE M++DELK FRSSL+ LR  VA R+EK  AMR E    P + PS
Sbjct: 121 FWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQPS 171

[Close]
BLAST of CsGy1G015390 vs. NCBI nr
Match: XP_022944391.1 (agamous-like MADS-box protein AGL61 [Cucurbita moschata])

HSP 1 Score: 225.3 bits (573), Expect = 1.8e-55
Identity = 116/166 (69.88%), Postives = 136/166 (81.93%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GRRKIEIK+L+K +++QVTFSKRR GLFNKAAELS+LCGAEIAIL+ SSR K+YT
Sbjct: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNV++LLDRFLTGN  PPKPAEAYLPL ELN D     AE++IEK+R  ERL N +R
Sbjct: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLEELNRDFDDVAAEYDIEKRRTAERLSN-DR 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV 167
           FWWDE LE M++D+LK FRSSL+ LR  VA R+EK  AMR E  P+
Sbjct: 121 FWWDEPLESMKIDDLKRFRSSLVDLRGKVAERVEKFTAMRKEGSPL 165

[Close]
BLAST of CsGy1G015390 vs. NCBI nr
Match: XP_022986583.1 (agamous-like MADS-box protein AGL61 [Cucurbita maxima])

HSP 1 Score: 225.3 bits (573), Expect = 1.8e-55
Identity = 116/166 (69.88%), Postives = 136/166 (81.93%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GRRKIEIK+L+K +++QVTFSKRR GLFNKAAELS+LCGAEIAIL+ S+  K+YT
Sbjct: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNV++LLDRFL GN  PPKPAEAYLPL ELN D     AEF+IEK+RA ERL N +R
Sbjct: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN-DR 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV 167
           FWWDE LE M++DELK FRSSL++LR  VA R+EK  AMR E  P+
Sbjct: 121 FWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPI 165

[Close]
BLAST of CsGy1G015390 vs. TAIR10
Match: AT5G60440.1 (AGAMOUS-like 62)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-26
Identity = 64/159 (40.25%), Postives = 99/159 (62.26%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           +KKS GR+KIE+ ++   +  QVTFSKRR GLF KA+EL  LCGAE+AI++FS   KV++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDALLDRFLTGNFLPP--------KPAEAYLPLPELNLDLCKAEAEFEIEKKRAV 120
           FGHPNVD+++DRF+  N LPP        +       + +LN  L +  ++ E EKK+  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ERLRNSERF-----WWDEALERMRMDELKSFRSSLLQLR 147
           E  +  E+      WW++ +E + + +L+ F+ +L  L+
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLK 160

[Close]
BLAST of CsGy1G015390 vs. TAIR10
Match: AT2G24840.1 (AGAMOUS-like 61)

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24
Identity = 65/159 (40.88%), Postives = 98/159 (61.64%), Query Frame = 0 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           K+S GR+KI + ++ K + RQVTFSKRR GLF KA+EL  LCGAEI I++FS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLPLP----ELNLDLCKAEAEFEIEKKRA------ 121
           GHP+V+++LDR+++ N +    ++     P    ELN+ L    +E E EKK+       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 -VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANV 150
             E +R S   WW++ +E M M +L+  + +L +LR  V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of CsGy1G015390 vs. TAIR10
Match: AT1G17310.1 (MADS-box transcription factor family protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 64/175 (36.57%), Postives = 97/175 (55.43%), Query Frame = 0 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           K + GR+KIEIK++++ T RQVTFSKRR GLF K+AELS+L GA+IA++ FS   ++Y F
Sbjct: 44  KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSERF 121
           GH  VDAL+D++L  +   P   E Y                       A +    S R 
Sbjct: 104 GH--VDALIDKYLRKS---PVKLEGY-------------------SGDNAAD--EESRRP 163

Query: 122 WWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGG 177
           WW+  +E +  +EL+ + ++L  LR N+  ++  +   R  D  + P+W I + G
Sbjct: 164 WWERPVESVPEEELEEYMAALSMLRENIGKKIVAMGNDRTVD--MVPAWPINVMG 190

[Close]
BLAST of CsGy1G015390 vs. TAIR10
Match: AT2G34440.1 (AGAMOUS-like 29)

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-20
Identity = 58/167 (34.73%), Postives = 97/167 (58.08%), Query Frame = 0 

Query: 6   GRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTFGHPN 65
           GRRKI+++ +    TRQVTFSKRR GLF KA+EL+ LC AE+ I++FS  GK +++G PN
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VDALLDRFL-------------TGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEK-KRA 125
           +D++ +RF+             +GN+ P       L      LDL   E E E E+ +++
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYRPK------LKRLSERLDLLNQEVEAEKERGEKS 121

Query: 126 VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRA 159
            E+L ++    + E++E + +DEL  ++  L  +   + G++  ++A
Sbjct: 122 QEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]
BLAST of CsGy1G015390 vs. TAIR10
Match: AT1G65360.1 (AGAMOUS-like 23)

HSP 1 Score: 91.3 bits (225), Expect = 7.5e-19
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 0 

Query: 1  MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
          +KK+ GRRK+EI ++ K +  QVTFSKR+ GLF KA+E   LC A+IA+++FS  GKV++
Sbjct: 2  VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61 FGHPNVDALLDRF 74
          FGHPNVD LLD F
Sbjct: 62 FGHPNVDVLLDHF 74

[Close]
BLAST of CsGy1G015390 vs. Swiss-Prot
Match: sp|Q9FKK2|AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.7e-25
Identity = 64/159 (40.25%), Postives = 99/159 (62.26%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           +KKS GR+KIE+ ++   +  QVTFSKRR GLF KA+EL  LCGAE+AI++FS   KV++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDALLDRFLTGNFLPP--------KPAEAYLPLPELNLDLCKAEAEFEIEKKRAV 120
           FGHPNVD+++DRF+  N LPP        +       + +LN  L +  ++ E EKK+  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ERLRNSERF-----WWDEALERMRMDELKSFRSSLLQLR 147
           E  +  E+      WW++ +E + + +L+ F+ +L  L+
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLK 160

[Close]
BLAST of CsGy1G015390 vs. Swiss-Prot
Match: sp|Q4PSU4|AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-23
Identity = 65/159 (40.88%), Postives = 98/159 (61.64%), Query Frame = 0 

Query: 2   KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
           K+S GR+KI + ++ K + RQVTFSKRR GLF KA+EL  LCGAEI I++FS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDALLDRFLTGNFLPPKPAEAYLPLP----ELNLDLCKAEAEFEIEKKRA------ 121
           GHP+V+++LDR+++ N +    ++     P    ELN+ L    +E E EKK+       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 -VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANV 150
             E +R S   WW++ +E M M +L+  + +L +LR  V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of CsGy1G015390 vs. Swiss-Prot
Match: sp|O64703|AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-19
Identity = 58/167 (34.73%), Postives = 97/167 (58.08%), Query Frame = 0 

Query: 6   GRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTFGHPN 65
           GRRKI+++ +    TRQVTFSKRR GLF KA+EL+ LC AE+ I++FS  GK +++G PN
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VDALLDRFL-------------TGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEK-KRA 125
           +D++ +RF+             +GN+ P       L      LDL   E E E E+ +++
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYRPK------LKRLSERLDLLNQEVEAEKERGEKS 121

Query: 126 VERLRNSERFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRA 159
            E+L ++    + E++E + +DEL  ++  L  +   + G++  ++A
Sbjct: 122 QEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]
BLAST of CsGy1G015390 vs. Swiss-Prot
Match: sp|O80807|AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 0 

Query: 1  MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
          +KK+ GRRK+EI ++ K +  QVTFSKR+ GLF KA+E   LC A+IA+++FS  GKV++
Sbjct: 2  VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61 FGHPNVDALLDRF 74
          FGHPNVD LLD F
Sbjct: 62 FGHPNVDVLLDHF 74

[Close]
BLAST of CsGy1G015390 vs. Swiss-Prot
Match: sp|Q9LMM8|AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0 

Query: 2  KKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61
          +K+ GRRKIE+ ++   +  QVTFSKRR GLF K +EL  LC AEIAI++FS  GK Y+F
Sbjct: 3  RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62 GHPNVDALLDRFL 75
          GHPNV+ LLD  L
Sbjct: 63 GHPNVNKLLDHSL 75

[Close]
BLAST of CsGy1G015390 vs. TrEMBL
Match: tr|A0A0A0LW53|A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 4.2e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180
           FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSIVLGGENQC 180

Query: 181 AASFHVGENQSFAMDWEEEIWG 203
           AASFHVGENQSFAMDWEEEIWG
Sbjct: 181 AASFHVGENQSFAMDWEEEIWG 202

[Close]
BLAST of CsGy1G015390 vs. TrEMBL
Match: tr|A0A1S3CAA4|A0A1S3CAA4_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103498214 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.4e-74
Identity = 149/212 (70.28%), Postives = 168/212 (79.25%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GRRKIEIK+LDK +T+QVTFSKRR GLFNKAAELS+LCGAEIA+L+FSSRGK+YT
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 61  FGHPNVDALLDRFLTG-NFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSE 120
           FGHPNVDALLDRFLTG N +PPKPAEAYLP+ ELN DL KAEAEFEIEK+RA ER RNSE
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 121 RFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSWSI------- 180
           RFWWDE LE M++DELK FRSSL++LRANV  RLEKI       P +  + SI       
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 181 --VLGGENQCAASFHVGENQSFAMDWEEEIWG 203
             +  G N C  SFH+ EN+S AMDWE EIWG
Sbjct: 181 IQLAAGNNHCLPSFHMAENRSVAMDWEAEIWG 212

[Close]
BLAST of CsGy1G015390 vs. TrEMBL
Match: tr|A0A1S3C5V9|A0A1S3C5V9_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103497390 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.6e-52
Identity = 115/171 (67.25%), Postives = 138/171 (80.70%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKSSGR+KIEIK+L+  + RQVTFSKRR GLFNKAAELS+L GAEIAIL+FSS GK+YT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVD L+DRFLT NF+P KPAEAYLPL ELN DL  A AEFEIEK RA ER+RN+  
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRA-ERMRNTGG 120

Query: 121 FWWDEA-LERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPVTPSW 171
           FWWDE  +E M ++ELK FRSSL++LR  VA ++E++ A+  E    +PS+
Sbjct: 121 FWWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAVNQEVLITSPSF 170

[Close]
BLAST of CsGy1G015390 vs. TrEMBL
Match: tr|A0A0A0LLS2|A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus OX=3659 GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.9e-51
Identity = 109/160 (68.12%), Postives = 131/160 (81.88%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKKS GR+KIEIK+L+  + RQVTFSKRR GLFNKAAELS+L GAEIAIL+FSS  K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120
           FGHPNVD L+DRFLT NF+PPKP EAYLPL ELN DL    AEFE EK+RA ER+R +  
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRA-ERMRKTGG 120

Query: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMR 161
           FWWDEA+E M +++LK FRSSL++LR  VA R+E++ A+R
Sbjct: 121 FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVR 159

[Close]
BLAST of CsGy1G015390 vs. TrEMBL
Match: tr|A0A0A0LE01|A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.8e-49
Identity = 108/211 (51.18%), Postives = 144/211 (68.25%), Query Frame = 0 

Query: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60
           MKK+ GR+KIEIK+L+K +++QVTFSKRR GLF KA ELS+LCGAE+AI++FS   K++ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSE- 120
           FGHP+VD LLDR+LTGN  PPKPAE+Y+P+ E N D      EFE EKKRA E +R +E 
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 -----RFWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDP---------- 180
                 FWW EA+E +R++ELK FRS+L+ LRA VA R+EK+ A+R+  P          
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

Query: 181 PVTPSWSIVLGGENQC--AASFHVGENQSFA 194
           P+T S   ++G   +     +FH+  NQ  A
Sbjct: 189 PMTSSSFHLIGNHQELPPPTAFHLAGNQRVA 219

The following BLAST results are available for this feature:
BLAST of CsGy1G015390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139610.16.4e-109100.00PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN65027.1 hyp... [more]
XP_008458954.15.1e-7470.28PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
XP_023512238.18.2e-5669.77agamous-like MADS-box protein AGL61 [Cucurbita pepo subsp. pepo][more]
XP_022944391.11.8e-5569.88agamous-like MADS-box protein AGL61 [Cucurbita moschata][more]
XP_022986583.11.8e-5569.88agamous-like MADS-box protein AGL61 [Cucurbita maxima][more]
BLAST of CsGy1G015390 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.13.7e-2640.25AGAMOUS-like 62[more]
AT2G24840.12.7e-2440.88AGAMOUS-like 61[more]
AT1G17310.11.0e-2036.57MADS-box transcription factor family protein[more]
AT2G34440.12.3e-2034.73AGAMOUS-like 29[more]
AT1G65360.17.5e-1958.90AGAMOUS-like 23[more]
BLAST of CsGy1G015390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FKK2|AGL62_ARATH6.7e-2540.25Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=... [more]
sp|Q4PSU4|AGL61_ARATH4.8e-2340.88Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=... [more]
sp|O64703|AGL29_ARATH4.2e-1934.73Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=... [more]
sp|O80807|AGL23_ARATH1.3e-1758.90Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=... [more]
sp|Q9LMM8|AGL28_ARATH3.3e-1658.90Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=... [more]
BLAST of CsGy1G015390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LW53|A0A0A0LW53_CUCSA4.2e-109100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181400 PE=4 SV=1[more]
tr|A0A1S3CAA4|A0A1S3CAA4_CUCME3.4e-7470.28agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103498214 PE=4... [more]
tr|A0A1S3C5V9|A0A1S3C5V9_CUCME3.6e-5267.25agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103497390 PE=4... [more]
tr|A0A0A0LLS2|A0A0A0LLS2_CUCSA6.9e-5168.13Mads box protein OS=Cucumis sativus OX=3659 GN=Csa_2G277060 PE=4 SV=1[more]
tr|A0A0A0LE01|A0A0A0LE01_CUCSA3.8e-4951.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR033896MADS_MEF2-like
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G015390.1CsGy1G015390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 7..27
score: 56.16
coord: 42..63
score: 44.08
coord: 27..42
score: 65.05
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 5..64
e-value: 8.0E-31
score: 118.4
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 17..61
e-value: 1.4E-20
score: 72.4
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 5..65
score: 27.151
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 17..80
e-value: 2.4E-24
score: 86.6
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 6..75
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 4..161
NoneNo IPR availablePANTHERPTHR11945:SF185AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATEDcoord: 4..161
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 6..77
e-value: 4.87385E-34
score: 116.883

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G015390Csa1G181400Cucumber (Chinese Long) v2cgybcuB001
CsGy1G015390CSPI01G15670Wild cucumber (PI 183967)cgybcpiB001
CsGy1G015390CsaV3_UNG063480Cucumber (Chinese Long) v3cgybcucB051
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G015390Watermelon (97103) v2cgybwmbB006
CsGy1G015390Watermelon (97103) v2cgybwmbB009
CsGy1G015390Wax gourdcgybwgoB032
CsGy1G015390Wax gourdcgybwgoB042
CsGy1G015390Cucumber (Gy14) v2cgybcgybB036
CsGy1G015390Cucurbita maxima (Rimu)cgybcmaB068
CsGy1G015390Cucurbita maxima (Rimu)cgybcmaB080
CsGy1G015390Cucurbita maxima (Rimu)cgybcmaB095
CsGy1G015390Cucurbita maxima (Rimu)cgybcmaB128
CsGy1G015390Cucurbita moschata (Rifu)cgybcmoB065
CsGy1G015390Cucurbita moschata (Rifu)cgybcmoB074
CsGy1G015390Cucurbita moschata (Rifu)cgybcmoB084
CsGy1G015390Cucurbita moschata (Rifu)cgybcmoB118
CsGy1G015390Cucurbita pepo (Zucchini)cgybcpeB007
CsGy1G015390Cucurbita pepo (Zucchini)cgybcpeB024
CsGy1G015390Cucurbita pepo (Zucchini)cgybcpeB075
CsGy1G015390Cucumber (Chinese Long) v2cgybcuB041
CsGy1G015390Bottle gourd (USVL1VR-Ls)cgyblsiB016
CsGy1G015390Bottle gourd (USVL1VR-Ls)cgyblsiB029
CsGy1G015390Bottle gourd (USVL1VR-Ls)cgyblsiB038
CsGy1G015390Melon (DHL92) v3.5.1cgybmeB014
CsGy1G015390Melon (DHL92) v3.6.1cgybmedB022
CsGy1G015390Watermelon (97103) v1cgybwmB051
CsGy1G015390Watermelon (Charleston Gray)cgybwcgB018
CsGy1G015390Watermelon (Charleston Gray)cgybwcgB021
CsGy1G015390Watermelon (97103) v1cgybwmB048
CsGy1G015390Wild cucumber (PI 183967)cgybcpiB038
CsGy1G015390Silver-seed gourdcarcgybB0051
CsGy1G015390Silver-seed gourdcarcgybB0408
CsGy1G015390Silver-seed gourdcarcgybB1021
CsGy1G015390Cucumber (Chinese Long) v3cgybcucB002
CsGy1G015390Cucumber (Chinese Long) v3cgybcucB046