Csa1G173180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G173180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10768091 .. 10768561 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGTAAGAAAAGAAGGAAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGATTTGAGAGGTCGATTTTATGGTTTAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATTTGTGTTGTAATTGTCTTTGGGTTCACTACTGCTTTTCCACCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTCAGGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

mRNA sequence

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Coding sequence (CDS)

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Protein sequence

MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI*
Homology
[Close]
BLAST of Csa1G173180 vs. TrEMBL
Match: A0A0A0LTC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]
BLAST of Csa1G173180 vs. NCBI nr
Match: gi|700209902|gb|KGN64998.1| (hypothetical protein Csa_1G173180 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 6.0e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:
BLAST of Csa1G173180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC1_CUCSA4.2e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1[more]
BLAST of Csa1G173180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209902|gb|KGN64998.1|6.0e-48100.00hypothetical protein Csa_1G173180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU171255cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G173180.1Csa1G173180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU171255CU171255transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G173180Lsi02G011590Bottle gourd (USVL1VR-Ls)culsiB027
Csa1G173180CSPI01G15370Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G173180Wax gourdcuwgoB036
Csa1G173180Wax gourdcuwgoB047
Csa1G173180Cucumber (Chinese Long) v2cucuB042
Csa1G173180Cucumber (Gy14) v1cgycuB016
Csa1G173180Cucumber (Gy14) v1cgycuB457
Csa1G173180Cucurbita maxima (Rimu)cmacuB212
Csa1G173180Cucurbita maxima (Rimu)cmacuB210
Csa1G173180Cucurbita maxima (Rimu)cmacuB395
Csa1G173180Cucurbita maxima (Rimu)cmacuB399
Csa1G173180Cucurbita moschata (Rifu)cmocuB199
Csa1G173180Cucurbita moschata (Rifu)cmocuB382
Csa1G173180Melon (DHL92) v3.5.1cumeB000
Csa1G173180Melon (DHL92) v3.5.1cumeB004
Csa1G173180Watermelon (Charleston Gray)cuwcgB019
Csa1G173180Watermelon (Charleston Gray)cuwcgB020
Csa1G173180Watermelon (Charleston Gray)cuwcgB022
Csa1G173180Watermelon (97103) v1cuwmB042
Csa1G173180Watermelon (97103) v1cuwmB048
Csa1G173180Watermelon (97103) v1cuwmB059
Csa1G173180Cucurbita pepo (Zucchini)cpecuB020
Csa1G173180Cucurbita pepo (Zucchini)cpecuB056
Csa1G173180Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G173180Bottle gourd (USVL1VR-Ls)culsiB020
Csa1G173180Bottle gourd (USVL1VR-Ls)culsiB037
Csa1G173180Cucumber (Gy14) v2cgybcuB001
Csa1G173180Cucumber (Gy14) v2cgybcuB240
Csa1G173180Melon (DHL92) v3.6.1cumedB024
Csa1G173180Melon (DHL92) v3.6.1cumedB016
Csa1G173180Silver-seed gourdcarcuB0049
Csa1G173180Silver-seed gourdcarcuB0051
Csa1G173180Watermelon (97103) v2cuwmbB005
Csa1G173180Watermelon (97103) v2cuwmbB008
Csa1G173180Watermelon (97103) v2cuwmbB009