CSPI01G15370 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G15370
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 10949894 .. 10950402 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGTAAGAAAAGAAGGAAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGATTTGAGAGGTCGATTTTATGGTTTAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATTTGTGTTGTAATTGTCGCAAAAGATTCAACGAAAACTAAATACCACTCCTTGGCTTTGGGTTCACTACTGCTTTTCCACCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTCAGGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTACTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

mRNA sequence

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTACTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Coding sequence (CDS)

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTACTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA
Homology
[Close]
BLAST of CSPI01G15370 vs. TrEMBL
Match: A0A0A0LTC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-45
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPTKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPP+KVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]
BLAST of CSPI01G15370 vs. NCBI nr
Match: gi|700209902|gb|KGN64998.1| (hypothetical protein Csa_1G173180 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-45
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPTKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPP+KVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:
BLAST of CSPI01G15370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G15370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC1_CUCSA2.0e-4598.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1[more]
BLAST of CSPI01G15370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G15370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209902|gb|KGN64998.1|2.8e-4598.98hypothetical protein Csa_1G173180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G15370.1CSPI01G15370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G15370Csa1G173180Cucumber (Chinese Long) v2cpicuB000
CSPI01G15370Lsi02G011590Bottle gourd (USVL1VR-Ls)cpilsiB027
CSPI01G15370CsaV3_1G015530Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G15370Watermelon (97103) v2cpiwmbB005
CSPI01G15370Watermelon (97103) v2cpiwmbB008
CSPI01G15370Watermelon (97103) v2cpiwmbB009
CSPI01G15370Wax gourdcpiwgoB036
CSPI01G15370Wild cucumber (PI 183967)cpicpiB039
CSPI01G15370Wild cucumber (PI 183967)cpicpiB049
CSPI01G15370Cucumber (Gy14) v1cgycpiB017
CSPI01G15370Cucumber (Gy14) v1cgycpiB482
CSPI01G15370Cucurbita maxima (Rimu)cmacpiB215
CSPI01G15370Cucurbita maxima (Rimu)cmacpiB212
CSPI01G15370Cucurbita maxima (Rimu)cmacpiB222
CSPI01G15370Cucurbita maxima (Rimu)cmacpiB399
CSPI01G15370Cucurbita maxima (Rimu)cmacpiB403
CSPI01G15370Cucurbita moschata (Rifu)cmocpiB385
CSPI01G15370Cucumber (Chinese Long) v2cpicuB049
CSPI01G15370Melon (DHL92) v3.5.1cpimeB017
CSPI01G15370Melon (DHL92) v3.5.1cpimeB031
CSPI01G15370Watermelon (Charleston Gray)cpiwcgB022
CSPI01G15370Watermelon (Charleston Gray)cpiwcgB023
CSPI01G15370Watermelon (Charleston Gray)cpiwcgB025
CSPI01G15370Watermelon (Charleston Gray)cpiwcgB030
CSPI01G15370Watermelon (97103) v1cpiwmB044
CSPI01G15370Watermelon (97103) v1cpiwmB050
CSPI01G15370Watermelon (97103) v1cpiwmB063
CSPI01G15370Cucurbita pepo (Zucchini)cpecpiB017
CSPI01G15370Cucurbita pepo (Zucchini)cpecpiB051
CSPI01G15370Bottle gourd (USVL1VR-Ls)cpilsiB019
CSPI01G15370Bottle gourd (USVL1VR-Ls)cpilsiB033
CSPI01G15370Bottle gourd (USVL1VR-Ls)cpilsiB038
CSPI01G15370Melon (DHL92) v3.6.1cpimedB017
CSPI01G15370Melon (DHL92) v3.6.1cpimedB025
CSPI01G15370Cucumber (Gy14) v2cgybcpiB001
CSPI01G15370Cucumber (Gy14) v2cgybcpiB249
CSPI01G15370Silver-seed gourdcarcpiB0053
CSPI01G15370Silver-seed gourdcarcpiB0055
CSPI01G15370Silver-seed gourdcarcpiB0435
CSPI01G15370Cucumber (Chinese Long) v3cpicucB052