CSPI01G15370.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G15370.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 10949894 .. 10950402 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGTAAGAAAAGAAGGAAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGATTTGAGAGGTCGATTTTATGGTTTAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATTTGTGTTGTAATTGTCGCAAAAGATTCAACGAAAACTAAATACCACTCCTTGGCTTTGGGTTCACTACTGCTTTTCCACCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTCAGGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTACTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

mRNA sequence

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTACTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Coding sequence (CDS)

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTACTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA
Homology
[Close]
BLAST of CSPI01G15370.1 vs. TrEMBL
Match: A0A0A0LTC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-45
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPTKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPP+KVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]
BLAST of CSPI01G15370.1 vs. NCBI nr
Match: gi|700209902|gb|KGN64998.1| (hypothetical protein Csa_1G173180 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-45
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPTKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPP+KVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:
BLAST of CSPI01G15370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G15370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC1_CUCSA2.0e-4598.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1[more]
BLAST of CSPI01G15370.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G15370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209902|gb|KGN64998.1|2.8e-4598.98hypothetical protein Csa_1G173180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G15370CSPI01G15370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G15370.1CSPI01G15370.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G15370.1.cds1CSPI01G15370.1.cds1CDS
CSPI01G15370.1.cds2CSPI01G15370.1.cds2CDS
CSPI01G15370.1.cds3CSPI01G15370.1.cds3CDS