Csa1G173180.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G173180.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10768091 .. 10768561 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGTAAGAAAAGAAGGAAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGATTTGAGAGGTCGATTTTATGGTTTAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATTTGTGTTGTAATTGTCTTTGGGTTCACTACTGCTTTTCCACCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTCAGGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

mRNA sequence

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Coding sequence (CDS)

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Protein sequence

MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI*
Homology
[Close]
BLAST of Csa1G173180.1 vs. TrEMBL
Match: A0A0A0LTC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]
BLAST of Csa1G173180.1 vs. NCBI nr
Match: gi|700209902|gb|KGN64998.1| (hypothetical protein Csa_1G173180 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 6.0e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:
BLAST of Csa1G173180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC1_CUCSA4.2e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173180 PE=4 SV=1[more]
BLAST of Csa1G173180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209902|gb|KGN64998.1|6.0e-48100.00hypothetical protein Csa_1G173180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G173180Csa1G173180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G173180.1Csa1G173180.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G173180.1.cds1Csa1G173180.1.cds1CDS
Csa1G173180.1.cds2Csa1G173180.1.cds2CDS
Csa1G173180.1.cds3Csa1G173180.1.cds3CDS