Csa1G168860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G168860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10463014 .. 10463335 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGATGCTTCTCTGACC

mRNA sequence

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Coding sequence (CDS)

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Protein sequence

MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTVQICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR*
Homology
[Close]
BLAST of Csa1G168860 vs. TrEMBL
Match: A0A0A0LSS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168860 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

[Close]
BLAST of Csa1G168860 vs. NCBI nr
Match: gi|700209864|gb|KGN64960.1| (hypothetical protein Csa_1G168860 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 5.5e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

The following BLAST results are available for this feature:
BLAST of Csa1G168860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSS3_CUCSA3.8e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168860 PE=4 SV=1[more]
BLAST of Csa1G168860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209864|gb|KGN64960.1|5.5e-52100.00hypothetical protein Csa_1G168860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G168860.1Csa1G168860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G168860ClCG01G011710Watermelon (Charleston Gray)cuwcgB022
Csa1G168860CSPI01G15010Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G168860Silver-seed gourdcarcuB0000
Csa1G168860Silver-seed gourdcarcuB0931
Csa1G168860Silver-seed gourdcarcuB0998
Csa1G168860Watermelon (97103) v2cuwmbB009
Csa1G168860Watermelon (97103) v2cuwmbB018
Csa1G168860Watermelon (97103) v2cuwmbB026
Csa1G168860Wax gourdcuwgoB049
Csa1G168860Cucumber (Chinese Long) v2cucuB016
Csa1G168860Cucumber (Gy14) v1cgycuB342
Csa1G168860Cucumber (Gy14) v1cgycuB457
Csa1G168860Cucurbita maxima (Rimu)cmacuB222
Csa1G168860Cucurbita maxima (Rimu)cmacuB399
Csa1G168860Cucurbita maxima (Rimu)cmacuB579
Csa1G168860Cucurbita moschata (Rifu)cmocuB206
Csa1G168860Cucurbita moschata (Rifu)cmocuB383
Csa1G168860Cucurbita moschata (Rifu)cmocuB569
Csa1G168860Melon (DHL92) v3.5.1cumeB015
Csa1G168860Melon (DHL92) v3.5.1cumeB068
Csa1G168860Watermelon (Charleston Gray)cuwcgB006
Csa1G168860Watermelon (Charleston Gray)cuwcgB028
Csa1G168860Watermelon (97103) v1cuwmB007
Csa1G168860Watermelon (97103) v1cuwmB042
Csa1G168860Watermelon (97103) v1cuwmB065
Csa1G168860Cucurbita pepo (Zucchini)cpecuB003
Csa1G168860Cucurbita pepo (Zucchini)cpecuB020
Csa1G168860Cucurbita pepo (Zucchini)cpecuB848
Csa1G168860Bottle gourd (USVL1VR-Ls)culsiB005
Csa1G168860Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G168860Bottle gourd (USVL1VR-Ls)culsiB021
Csa1G168860Bottle gourd (USVL1VR-Ls)culsiB049
Csa1G168860Cucumber (Gy14) v2cgybcuB001
Csa1G168860Melon (DHL92) v3.6.1cumedB010
Csa1G168860Melon (DHL92) v3.6.1cumedB061
Csa1G168860Melon (DHL92) v3.6.1cumedB078