Csa1G168860.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G168860.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10463014 .. 10463335 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGATGCTTCTCTGACC

mRNA sequence

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Coding sequence (CDS)

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Protein sequence

MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTVQICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR*
Homology
[Close]
BLAST of Csa1G168860.1 vs. TrEMBL
Match: A0A0A0LSS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168860 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

[Close]
BLAST of Csa1G168860.1 vs. NCBI nr
Match: gi|700209864|gb|KGN64960.1| (hypothetical protein Csa_1G168860 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 5.5e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

The following BLAST results are available for this feature:
BLAST of Csa1G168860.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSS3_CUCSA3.8e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168860 PE=4 SV=1[more]
BLAST of Csa1G168860.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209864|gb|KGN64960.1|5.5e-52100.00hypothetical protein Csa_1G168860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G168860Csa1G168860gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G168860.1Csa1G168860.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G168860.1.cds1Csa1G168860.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G168860.1.utr3p1Csa1G168860.1.utr3p1three_prime_UTR