Csa1G126050 (gene) Cucumber (Chinese Long) v2

NameCsa1G126050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUbiquitin family protein; contains IPR019955 (Ubiquitin supergroup)
LocationChr1 : 9317711 .. 9317932 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAGGTCGTGCTCAACGATCGTCTAGGCAAGAAGGTCCGTGTGAAGTGCAACGAGGATGATACGATTGGAGACTTGAAGAAGCTTGTCGCCGCTCAGACCGGAACCCGGACTGAGAAAATCAGGATCCAGAAGTGGTATAATATCTATAAGGATCATATCACTCTTAAGGATTACGAGATTCATGACGGCATGGGGCTGGAACTCTATTACAATTGA

mRNA sequence

ATGATCGAGGTCGTGCTCAACGATCGTCTAGGCAAGAAGGTCCGTGTGAAGTGCAACGAGGATGATACGATTGGAGACTTGAAGAAGCTTGTCGCCGCTCAGACCGGAACCCGGACTGAGAAAATCAGGATCCAGAAGTGGTATAATATCTATAAGGATCATATCACTCTTAAGGATTACGAGATTCATGACGGCATGGGGCTGGAACTCTATTACAATTGA

Coding sequence (CDS)

ATGATCGAGGTCGTGCTCAACGATCGTCTAGGCAAGAAGGTCCGTGTGAAGTGCAACGAGGATGATACGATTGGAGACTTGAAGAAGCTTGTCGCCGCTCAGACCGGAACCCGGACTGAGAAAATCAGGATCCAGAAGTGGTATAATATCTATAAGGATCATATCACTCTTAAGGATTACGAGATTCATGACGGCATGGGGCTGGAACTCTATTACAATTGA

Protein sequence

MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN*
BLAST of Csa1G126050 vs. Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.8e-36
Identity = 71/73 (97.26%), Postives = 70/73 (95.89%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-28
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of Csa1G126050 vs. Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-28
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of Csa1G126050 vs. Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-28
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of Csa1G126050 vs. Swiss-Prot
Match: UBL5_HUMAN (Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-28
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of Csa1G126050 vs. TrEMBL
Match: A0A0A0LSS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126050 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. TrEMBL
Match: D7MTG3_ARALL (Ubiquitin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_917558 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. TrEMBL
Match: A0A0D3ABK7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=UBL5 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. TrEMBL
Match: R0GPM9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027479mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. TrEMBL
Match: A0A078H902_BRANA (BnaA01g24730D protein OS=Brassica napus GN=BnaA01g24730D PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. TAIR10
Match: AT5G42300.1 (AT5G42300.1 ubiquitin-like protein 5)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-37
Identity = 71/73 (97.26%), Postives = 70/73 (95.89%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. TAIR10
Match: AT3G45180.1 (AT3G45180.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-36
Identity = 70/73 (95.89%), Postives = 69/73 (94.52%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNE+DTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHI LKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. NCBI nr
Match: gi|449443353|ref|XP_004139444.1| (PREDICTED: ubiquitin-like protein 5 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. NCBI nr
Match: gi|297791835|ref|XP_002863802.1| (ubiquitin family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 151.4 bits (381), Expect = 6.3e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. NCBI nr
Match: gi|226498162|ref|NP_001147132.1| (ubiquitin-like protein 5 [Zea mays])

HSP 1 Score: 151.0 bits (380), Expect = 8.3e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of Csa1G126050 vs. NCBI nr
Match: gi|937937741|dbj|BAT12654.1| (Os11g0145400, partial [Oryza sativa Japonica Group])

HSP 1 Score: 151.0 bits (380), Expect = 8.3e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 11 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLKDY 70

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 71 EIHDGMGLELYYN 83

BLAST of Csa1G126050 vs. NCBI nr
Match: gi|514805304|ref|XP_004977514.1| (PREDICTED: ubiquitin-like protein 5 [Setaria italica])

HSP 1 Score: 151.0 bits (380), Expect = 8.3e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60
           MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 63  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLKDY 122

Query: 61  EIHDGMGLELYYN 74
           EIHDGMGLELYYN
Sbjct: 123 EIHDGMGLELYYN 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
UBL5_ARATH8.8e-3697.26Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1[more]
UBL5_MOUSE2.3e-2880.56Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1[more]
UBL5_BOVIN2.3e-2880.56Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1[more]
UBL5_MESAU2.3e-2880.56Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1[more]
UBL5_HUMAN2.3e-2880.56Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LSS0_CUCSA1.2e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126050 PE=4 SV=1[more]
D7MTG3_ARALL4.4e-3498.63Ubiquitin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_91755... [more]
A0A0D3ABK7_BRAOL4.4e-3498.63Uncharacterized protein OS=Brassica oleracea var. oleracea GN=UBL5 PE=4 SV=1[more]
R0GPM9_9BRAS4.4e-3498.63Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027479mg PE=4 SV=1[more]
A0A078H902_BRANA4.4e-3498.63BnaA01g24730D protein OS=Brassica napus GN=BnaA01g24730D PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G42300.15.0e-3797.26 ubiquitin-like protein 5[more]
AT3G45180.14.2e-3695.89 Ubiquitin-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449443353|ref|XP_004139444.1|1.7e-34100.00PREDICTED: ubiquitin-like protein 5 [Cucumis sativus][more]
gi|297791835|ref|XP_002863802.1|6.3e-3498.63ubiquitin family protein [Arabidopsis lyrata subsp. lyrata][more]
gi|226498162|ref|NP_001147132.1|8.3e-3498.63ubiquitin-like protein 5 [Zea mays][more]
gi|937937741|dbj|BAT12654.1|8.3e-3498.63Os11g0145400, partial [Oryza sativa Japonica Group][more]
gi|514805304|ref|XP_004977514.1|8.3e-3498.63PREDICTED: ubiquitin-like protein 5 [Setaria italica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006464 cellular protein modification process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0031386 protein tag
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090314cucumber EST collection version 3.0transcribed_cluster
CU093671cucumber EST collection version 3.0transcribed_cluster
CU110192cucumber EST collection version 3.0transcribed_cluster
CU131018cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G126050.1Csa1G126050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU131018CU131018transcribed_cluster
CU110192CU110192transcribed_cluster
CU090314CU090314transcribed_cluster
CU093671CU093671transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 11..70
score: 4.
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 2..73
score: 10
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..73
score: 5.2
NoneNo IPR availablePANTHERPTHR13042FAMILY NOT NAMEDcoord: 1..73
score: 2.4