CU093671 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU093671
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 9317740 .. 9317991 (+)
Sequence length	257

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGTCATGAATCTCGTAATCCTTAAGAGTGATATGATCCTTATAGATATTATACCACTTCTGGATCCTGATTTTCTCAGTCCGGGTTCCGGTCTGAGCGGCGACAAGCTTCTTCAAGTCTCCAATCGTATCATCCTCGTTGCACTTCACACGGACCTTCTTGCCTAGACGATCGTTGAGCACGACCTCGATCATCCTCGCCCCCAATCGGAAATATTATGAACCGCAGGTGAAAGAGAGATTTTGTGGATGTCCCCGA

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU093671 vs. Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-30
Identity = 62/64 (96.88%), Postives = 61/64 (95.31%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 62  EIHD 121
           EIHD
Sbjct: 61  EIHD 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. Swiss-Prot
Match: UBL5_CAEEL (Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.2e-24
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIE+ +NDRLGKKVR+KCN  DTIGDLKKL+AAQTGTR EKI ++KWY IYKDHITL DY
Sbjct: 1   MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query: 62  EIHD 121
           EIH+
Sbjct: 61  EIHE 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-24
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 62  EIHD 121
           EIHD
Sbjct: 61  EIHD 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-24
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 62  EIHD 121
           EIHD
Sbjct: 61  EIHD 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-24
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 62  EIHD 121
           EIHD
Sbjct: 61  EIHD 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. TrEMBL
Match: A0A059ADC7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J00924 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = -2


Query: 2   RLGARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHI 61
           R+ A+MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR +KIRIQKWYNIYKDHI
Sbjct: 56  RVSAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHI 115

Query: 62  TLKDYEIHD 121
           TLKDYEIHD
Sbjct: 116 TLKDYEIHD 124

Query: 122  181
           
Sbjct: 176  124

Query: 182  209
           
Sbjct: 236  124

[Close]

BLAST of CU093671 vs. TrEMBL
Match: A0A0A0LSS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126050 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.4e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60

Query: 62  EIHD 121
           EIHD
Sbjct: 61  EIHD 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. TrEMBL
Match: A0A0N7KFQ6_ORYSJ (Os02g0628800 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0628800 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = -2


Query: 2   GARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITL 61
           GA MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITL
Sbjct: 34  GAEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL 93

Query: 62  KDYEIHD 121
            DYEIHD
Sbjct: 94  ADYEIHD 100

Query: 122  181
           
Sbjct: 154  100

Query: 182  203
           
Sbjct: 214  100

[Close]

BLAST of CU093671 vs. TrEMBL
Match: A0A0D9YV97_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = -2


Query: 2   GARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITL 61
           GA MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITL
Sbjct: 124 GAEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL 183

Query: 62  KDYEIHD 121
            DYEIHD
Sbjct: 184 ADYEIHD 190

Query: 122  181
           
Sbjct: 244  190

Query: 182  203
           
Sbjct: 304  190

[Close]

BLAST of CU093671 vs. TrEMBL
Match: I1P2E6_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = -2


Query: 2   GARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITL 61
           GA MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITL
Sbjct: 162 GAEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL 221

Query: 62  KDYEIHD 121
            DYEIHD
Sbjct: 222 ADYEIHD 228

Query: 122  181
           
Sbjct: 282  228

Query: 182  203
           
Sbjct: 342  228

[Close]

BLAST of CU093671 vs. NCBI nr
Match: gi|629085023|gb|KCW51380.1| (hypothetical protein EUGRSUZ_J00924, partial [Eucalyptus grandis])

HSP 1 Score: 135.2 bits (339), Expect = 5.4e-29
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = -2


Query: 2   RLGARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHI 61
           R+ A+MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR +KIRIQKWYNIYKDHI
Sbjct: 56  RVSAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHI 115

Query: 62  TLKDYEIHD 121
           TLKDYEIHD
Sbjct: 116 TLKDYEIHD 124

Query: 122  181
           
Sbjct: 176  124

Query: 182  209
           
Sbjct: 236  124

[Close]

BLAST of CU093671 vs. NCBI nr
Match: gi|449443353|ref|XP_004139444.1| (PREDICTED: ubiquitin-like protein 5 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = -2


Query: 2   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 61
           MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKDY 60

Query: 62  EIHD 121
           EIHD
Sbjct: 61  EIHD 64

Query: 122  181
           
Sbjct: 121  64

Query: 182  194
           
Sbjct: 181  64

[Close]

BLAST of CU093671 vs. NCBI nr
Match: gi|937904827|dbj|BAS79881.1| (Os02g0628800, partial [Oryza sativa Japonica Group])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = -2


Query: 2   GARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITL 61
           GA MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITL
Sbjct: 34  GAEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL 93

Query: 62  KDYEIHD 121
            DYEIHD
Sbjct: 94  ADYEIHD 100

Query: 122  181
           
Sbjct: 154  100

Query: 182  203
           
Sbjct: 214  100

[Close]

BLAST of CU093671 vs. NCBI nr
Match: gi|657952783|ref|XP_008359285.1| (PREDICTED: ubiquitin-like protein 5 [Malus domestica])

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -2


Query: 2   GARMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITL 61
           G +MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR +KIRIQKWYNIYKDHITL
Sbjct: 60  GEKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYNIYKDHITL 119

Query: 62  KDYEIHD 121
           KDYEIHD
Sbjct: 120 KDYEIHD 126

Query: 122  181
           
Sbjct: 180  126

Query: 182  203
           
Sbjct: 240  126

[Close]

BLAST of CU093671 vs. NCBI nr
Match: gi|514805304|ref|XP_004977514.1| (PREDICTED: ubiquitin-like protein 5 [Setaria italica])

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-28
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -2


Query: 2   RMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNIYKDHITLKD 61
           +MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLKD
Sbjct: 62  KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLKD 121

Query: 62  YEIHD 121
           YEIHD
Sbjct: 122 YEIHD 126

Query: 122  181
           
Sbjct: 182  126

Query: 182  197
           
Sbjct: 242  126

The following BLAST results are available for this feature:

BLAST of CU093671 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBL5_ARATH	6.4e-30	96.88	Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1	[more]
UBL5_CAEEL	5.2e-24	78.13	Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=3 SV=1	[more]
UBL5_BOVIN	6.8e-24	79.69	Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1	[more]
UBL5_PSAOB	6.8e-24	79.69	Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1	[more]
UBL5_MOUSE	6.8e-24	79.69	Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1	[more]

BLAST of CU093671 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059ADC7_EUCGR	2.9e-29	92.75	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J00924 PE=4 ...	[more]
A0A0A0LSS0_CUCSA	8.4e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126050 PE=4 SV=1	[more]
A0A0N7KFQ6_ORYSJ	1.1e-28	95.52	Os02g0628800 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0628800 ...	[more]
A0A0D9YV97_9ORYZ	1.1e-28	95.52	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
I1P2E6_ORYGL	1.1e-28	95.52	Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1	[more]

BLAST of CU093671 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629085023\|gb\|KCW51380.1\|	5.4e-29	92.75	hypothetical protein EUGRSUZ_J00924, partial [Eucalyptus grandis]	[more]
gi\|449443353\|ref\|XP_004139444.1\|	1.6e-28	100.00	PREDICTED: ubiquitin-like protein 5 [Cucumis sativus]	[more]
gi\|937904827\|dbj\|BAS79881.1\|	2.0e-28	95.52	Os02g0628800, partial [Oryza sativa Japonica Group]	[more]
gi\|657952783\|ref\|XP_008359285.1\|	2.7e-28	94.03	PREDICTED: ubiquitin-like protein 5 [Malus domestica]	[more]
gi\|514805304\|ref\|XP_004977514.1\|	4.6e-28	96.92	PREDICTED: ubiquitin-like protein 5 [Setaria italica]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G126050	Csa1G126050	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0003225	G0003225	EST
H0143816	H0143816	EST
H0156227	H0156227	EST
H0175686	H0175686	EST