Csa1G120440 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G120440
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Sister chromatid cohesion protein PDS5
Location	Chr1 : 9113745 .. 9114433 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATACTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGTAAGCTTATATCTCAATATCACTTATATTTATTCGGTGGTATATATGTTAGAAAAGAGCTCAATGAGAAATATATATATATAGAACTAATAATATGCTGTAAATTTGGTAAGTTTAGAAAAGTATACCCATCCCTGTACATAAGTGGTTTAGTGAGATTGATTGCGAACTCTGTGTTGTTGAATTATTTATTTTTTATCTTTTTTTTTTTTTTGGTATTAAGTTTGATGAAAATTTTGTAAAGTTCGATGAAAATATTTGTAAAGATCTGCAAATATAGACATGAAGCCATTTTGGTGTTTGGCTGTTTGTTTTGGTTGCGTTCTCATTTTCTTTAACTGCAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCCGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGCGATTAACTCAGTTAGTTTTTCAGGTAACGCTTCATACAATTGACTTTGCCAGATGCTCATGA

mRNA sequence

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATACTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCCGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGCGATTAACTCAGTTAGTTTTTCAGGTAACGCTTCATACAATTGACTTTGCCAGATGCTCATGA

Coding sequence (CDS)

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATACTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCCGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGCGATTAACTCAGTTAGTTTTTCAGGTAACGCTTCATACAATTGACTTTGCCAGATGCTCATGA

Protein sequence

MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS*

Homology

[Close]

BLAST of Csa1G120440 vs. Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-07
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 49 PLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          P++  +ENLRCSKEGLT++AA+ERL +F  +KLEEKK
Sbjct: 26 PIEEVFENLRCSKEGLTTQAADERLALFGHNKLEEKK 62

[Close]

BLAST of Csa1G120440 vs. Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-07
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          D +E  +    E V  +  P++  +E+LRCS+EGLT+EAA+ERL +F  +KLEEKK
Sbjct: 3  DKEEVLEAVLKETVDLENVPIEEVFESLRCSREGLTTEAADERLALFGHNKLEEKK 58

[Close]

BLAST of Csa1G120440 vs. Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC+KEGLT+ AA+ERL IF  +KLEEKK
Sbjct: 6  EVLDAVLKETVDLENIPIEEVFENLRCTKEGLTATAAQERLSIFGYNKLEEKK 58

[Close]

BLAST of Csa1G120440 vs. Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.8e-07
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC+KEGLT+ AA+ERL IF  +KLEEKK
Sbjct: 7  EVLDAVLKEAVDLENIPIEEVFENLRCTKEGLTATAAQERLAIFGYNKLEEKK 59

[Close]

BLAST of Csa1G120440 vs. Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC++EGLT+ AA+ERL IF  +KLEEKK
Sbjct: 6  EVLDAVLKETVDLENIPIEEVFENLRCTREGLTATAAQERLSIFGYNKLEEKK 58

[Close]

BLAST of Csa1G120440 vs. TrEMBL
Match: A0A0A0LSQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G120440 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
           MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS
Sbjct: 1   MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60

Query: 61  KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS 115
           KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS
Sbjct: 61  KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS 114

[Close]

BLAST of Csa1G120440 vs. TrEMBL
Match: A0A0A0LW18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172630 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-17
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 1    MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
            MQSETNS TAYPEYILPYLVHALAH+SCPDVDECKD++AYELVY +++ +      L   
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSL---LVHK 1011

Query: 61   KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARC 114
             E L SEA   + K       E    +  +  +++ ++ +   T   I +A C
Sbjct: 1012 DEDLKSEANSTKEK-------ENVSTIFSIFHSIKNSEDIVDATKTKISYAIC 1054

[Close]

BLAST of Csa1G120440 vs. TrEMBL
Match: W9QL19_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010621 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1


Query: 1    MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
            +QS+ NS TAYPEYI+PYLVHALAHHSCPDVDECKD QA+E++YR++Y +     +    
Sbjct: 949  VQSDANSFTAYPEYIIPYLVHALAHHSCPDVDECKDAQAFEVLYRQLYLILSIMVH---R 1008

Query: 61   KEGLTSEAAEERLK 75
             E   SEA+   LK
Sbjct: 1009 DEDTKSEASSNMLK 1019

[Close]

BLAST of Csa1G120440 vs. TrEMBL
Match: A0A061GGJ0_THECC (Androgen induced inhibitor of proliferation / pds5 isoform 1 OS=Theobroma cacao GN=TCM_030447 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 36/48 (75.00%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1   MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           +Q++TNS+T YPEYILPYLVHALAHHSCP+ DECKDV+A+EL+YR++Y
Sbjct: 952 IQADTNSSTTYPEYILPYLVHALAHHSCPNTDECKDVKAFELIYRQLY 999

[Close]

BLAST of Csa1G120440 vs. TrEMBL
Match: A0A061GHF7_THECC (Androgen induced inhibitor of proliferation / pds5 isoform 2 OS=Theobroma cacao GN=TCM_030447 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 36/48 (75.00%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1   MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           +Q++TNS+T YPEYILPYLVHALAHHSCP+ DECKDV+A+EL+YR++Y
Sbjct: 952 IQADTNSSTTYPEYILPYLVHALAHHSCPNTDECKDVKAFELIYRQLY 999

[Close]

BLAST of Csa1G120440 vs. TAIR10
Match: AT5G47690.3 (AT5G47690.3 binding)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1


Query: 2    QSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSK 61
            Q++ NS T YP +ILPYLVHALAHHSCPDV++CKDV+ YE++YR++Y +      L   +
Sbjct: 953  QTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISML--LHKEE 1012

Query: 62   EGLTSEAAEER 73
            +G T +  +ER
Sbjct: 1013 DGKTEDIDKER 1021

[Close]

BLAST of Csa1G120440 vs. TAIR10
Match: AT3G47950.1 (AT3G47950.1 H(+)-ATPase 4)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-08
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 49 PLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          P++  +ENLRCSKEGLT++AA+ERL +F  +KLEEKK
Sbjct: 26 PIEEVFENLRCSKEGLTTQAADERLALFGHNKLEEKK 62

[Close]

BLAST of Csa1G120440 vs. TAIR10
Match: AT5G62670.1 (AT5G62670.1 H(+)-ATPase 11)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-08
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          D +E  +    E V  +  P++  +E+LRCS+EGLT+EAA+ERL +F  +KLEEKK
Sbjct: 3  DKEEVLEAVLKETVDLENVPIEEVFESLRCSREGLTTEAADERLALFGHNKLEEKK 58

[Close]

BLAST of Csa1G120440 vs. TAIR10
Match: AT4G30190.2 (AT4G30190.2 H(+)-ATPase 2)

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 1


Query: 49 PLKRFYENLRCSKEGLTSEAAEERLKIFSDDKLEEKK 86
          P++  ++ L+CS+EGLT++  E+R++IF  +KLEEKK
Sbjct: 18 PIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKK 54

[Close]

BLAST of Csa1G120440 vs. NCBI nr
Match: gi|700209732|gb|KGN64828.1| (hypothetical protein Csa_1G120440 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
           MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS
Sbjct: 1   MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60

Query: 61  KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS 115
           KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS
Sbjct: 61  KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARCS 114

[Close]

BLAST of Csa1G120440 vs. NCBI nr
Match: gi|659127303|ref|XP_008463634.1| (PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-18
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 1    MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
            MQSETN  TAYPEYILPYLVHALAHHSCPDVDECKDV+AYELVYR+++ +      L   
Sbjct: 952  MQSETNPTTAYPEYILPYLVHALAHHSCPDVDECKDVKAYELVYRRLHLILSL---LVHK 1011

Query: 61   KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARC 114
             E L SEA   + K       E    +  +  ++R ++ V   T   I +A C
Sbjct: 1012 DEDLKSEANSTKEK-------ENVSTIFSIFHSIRNSEDVVDATKTKISYAIC 1054

[Close]

BLAST of Csa1G120440 vs. NCBI nr
Match: gi|778659626|ref|XP_011654769.1| (PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 1    MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
            MQSETNS TAYPEYILPYLVHALAH+SCPDVDECKD++AYELVY +++ +      L   
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSL---LVHK 1011

Query: 61   KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARC 114
             E L SEA   + K       E    +  +  +++ ++ +   T   I +A C
Sbjct: 1012 DEDLKSEANSTKEK-------ENVSTIFSIFHSIKNSEDIVDATKTKISYAIC 1054

[Close]

BLAST of Csa1G120440 vs. NCBI nr
Match: gi|700209896|gb|KGN64992.1| (hypothetical protein Csa_1G172630 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 1    MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
            MQSETNS TAYPEYILPYLVHALAH+SCPDVDECKD++AYELVY +++ +      L   
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSL---LVHK 1011

Query: 61   KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARC 114
             E L SEA   + K       E    +  +  +++ ++ +   T   I +A C
Sbjct: 1012 DEDLKSEANSTKEK-------ENVSTIFSIFHSIKNSEDIVDATKTKISYAIC 1054

[Close]

BLAST of Csa1G120440 vs. NCBI nr
Match: gi|778659622|ref|XP_011654767.1| (PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 1    MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
            MQSETNS TAYPEYILPYLVHALAH+SCPDVDECKD++AYELVY +++ +      L   
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSL---LVHK 1011

Query: 61   KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVALRLTQLVFQVTLHTIDFARC 114
             E L SEA   + K       E    +  +  +++ ++ +   T   I +A C
Sbjct: 1012 DEDLKSEANSTKEK-------ENVSTIFSIFHSIKNSEDIVDATKTKISYAIC 1054

The following BLAST results are available for this feature:

BLAST of Csa1G120440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PMA4_ARATH	3.5e-07	64.86	ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2	[more]
PMA11_ARATH	3.5e-07	48.21	ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1	[more]
PMA3_NICPL	6.0e-07	52.83	Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1	[more]
PMA1_NICPL	7.8e-07	52.83	Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1	[more]
PMA1_SOLLC	1.3e-06	50.94	Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1	[more]

BLAST of Csa1G120440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSQ4_CUCSA	2.3e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G120440 PE=4 SV=1	[more]
A0A0A0LW18_CUCSA	9.9e-17	46.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172630 PE=4 SV=1	[more]
W9QL19_9ROSA	1.4e-15	58.11	Uncharacterized protein OS=Morus notabilis GN=L484_010621 PE=4 SV=1	[more]
A0A061GGJ0_THECC	3.2e-15	75.00	Androgen induced inhibitor of proliferation / pds5 isoform 1 OS=Theobroma cacao ...	[more]
A0A061GHF7_THECC	3.2e-15	75.00	Androgen induced inhibitor of proliferation / pds5 isoform 2 OS=Theobroma cacao ...	[more]

BLAST of Csa1G120440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47690.3	1.2e-16	52.11	binding	[more]
AT3G47950.1	2.0e-08	64.86	H(+)-ATPase 4	[more]
AT5G62670.1	2.0e-08	48.21	H(+)-ATPase 11	[more]
AT4G30190.2	7.0e-06	48.65	H(+)-ATPase 2	[more]

BLAST of Csa1G120440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209732\|gb\|KGN64828.1\|	3.4e-58	100.00	hypothetical protein Csa_1G120440 [Cucumis sativus]	[more]
gi\|659127303\|ref\|XP_008463634.1\|	5.8e-18	49.56	PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A...	[more]
gi\|778659626\|ref\|XP_011654769.1\|	1.4e-16	46.02	PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Cucumis ...	[more]
gi\|700209896\|gb\|KGN64992.1\|	1.4e-16	46.02	hypothetical protein Csa_1G172630 [Cucumis sativus]	[more]
gi\|778659622\|ref\|XP_011654767.1\|	1.4e-16	46.02	PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Cucumis ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0008150	biological_process
biological_process	GO:0009556	microsporogenesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G120440.1	Csa1G120440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 2..48 score: 9.9
None	No IPR available	PANTHER	PTHR12663:SF0	PDS5	coord: 2..48 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G120440	CSPI01G13640	Wild cucumber (PI 183967)	cpicuB000
Csa1G120440	CsGy1G013660	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G120440	Watermelon (97103) v2	cuwmbB034
Csa1G120440	Wax gourd	cuwgoB016
Csa1G120440	Wax gourd	cuwgoB049
Csa1G120440	Cucumber (Chinese Long) v2	cucuB018
Csa1G120440	Cucurbita maxima (Rimu)	cmacuB203
Csa1G120440	Cucurbita maxima (Rimu)	cmacuB431
Csa1G120440	Cucurbita moschata (Rifu)	cmocuB188
Csa1G120440	Cucurbita moschata (Rifu)	cmocuB421
Csa1G120440	Melon (DHL92) v3.5.1	cumeB015
Csa1G120440	Watermelon (Charleston Gray)	cuwcgB037
Csa1G120440	Watermelon (97103) v1	cuwmB010
Csa1G120440	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G120440	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G120440	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G120440	Cucumber (Gy14) v2	cgybcuB097
Csa1G120440	Melon (DHL92) v3.6.1	cumedB010
Csa1G120440	Silver-seed gourd	carcuB0185
Csa1G120440	Silver-seed gourd	carcuB0360
Csa1G120440	Silver-seed gourd	carcuB0472