CSPI01G13640 (gene) Wild cucumber (PI 183967)

NameCSPI01G13640
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPlasma membrane ATPase
LocationChr1 : 9167807 .. 9168437 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATTCTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGTAAGCTTATATCTCAATATCACTTATATTTATTCGGTGGTATATATGTTAGAAAAGAGCTCAATGAGAAATATATATATATAGAACTAATAATATGCTGTAAATTTGGTAAGTTTAGAAAAGTATACCCATCCCTGTACATAAGTGGTTTAGTGAGATTGATTACGAACTCTGTGTTATTGAATTATTTATTTTTTATCTTTTTTTTTTTTTTTTGGTATTAAGTTTGATGAAAATTTTGTAAAGTTCGATGAAAATATTTGTAAAGATCTGCAAATATAGACATGAAGCCATTTTGGTGTTTGGCTGTTTGTTTTGGTTGCGTTCTCATTTTCTTTAACTGCAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTAAGGCTGCTGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGTGA

mRNA sequence

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATTCTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTAAGGCTGCTGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGTGA

Coding sequence (CDS)

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATTCTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTAAGGCTGCTGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGTGA
BLAST of CSPI01G13640 vs. Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.5e-07
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1

Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC+KEGLT+ AA+ERL IF  +KLEEKK
Sbjct: 6  EVLDAVLKETVDLENIPIEEVFENLRCTKEGLTATAAQERLSIFGYNKLEEKK 58

BLAST of CSPI01G13640 vs. Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.5e-07
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 1

Query: 49 PLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          P++  +ENLRCSKEGLT++AA+ERL +F  +KLEEKK
Sbjct: 26 PIEEVFENLRCSKEGLTTQAADERLALFGHNKLEEKK 62

BLAST of CSPI01G13640 vs. Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-07
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1

Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC+KEGLT+ AA+ERL IF  +KLEEKK
Sbjct: 7  EVLDAVLKEAVDLENIPIEEVFENLRCTKEGLTATAAQERLAIFGYNKLEEKK 59

BLAST of CSPI01G13640 vs. Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-07
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          D +E  +    E V  +  P++  +E+LRCS+EGLT++AA+ERL +F  +KLEEKK
Sbjct: 3  DKEEVLEAVLKETVDLENVPIEEVFESLRCSREGLTTEAADERLALFGHNKLEEKK 58

BLAST of CSPI01G13640 vs. Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1

Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC++EGLT+ AA+ERL IF  +KLEEKK
Sbjct: 6  EVLDAVLKETVDLENIPIEEVFENLRCTREGLTATAAQERLSIFGYNKLEEKK 58

BLAST of CSPI01G13640 vs. TrEMBL
Match: A0A0A0LSQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G120440 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-45
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 1

Query: 1  MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
          MQSETNSATAYPEYILP+LVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS
Sbjct: 1  MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60

Query: 61 KEGLTSKAAEERLKIFSDDKLEEKKLMLHLLVAL 95
          KEGLTS+AAEERLKIFSDDKLEEKKLMLHLLVAL
Sbjct: 61 KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVAL 94

BLAST of CSPI01G13640 vs. TrEMBL
Match: A0A0A0LW18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172630 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETNS TAYPEYILP+LVHALAH+SCPDVDECKD++AYELVY +++ +     +++  
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSLLVHKDED 1011

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1012 LKSEANSTKEKENVSTIFS 1030

BLAST of CSPI01G13640 vs. TrEMBL
Match: W9QL19_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010621 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-15
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1

Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           +QS+ NS TAYPEYI+P+LVHALAHHSCPDVDECKD QA+E++YR++Y
Sbjct: 949 VQSDANSFTAYPEYIIPYLVHALAHHSCPDVDECKDAQAFEVLYRQLY 996

BLAST of CSPI01G13640 vs. TrEMBL
Match: A0A061GHF7_THECC (Androgen induced inhibitor of proliferation / pds5 isoform 2 OS=Theobroma cacao GN=TCM_030447 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-15
Identity = 35/48 (72.92%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           +Q++TNS+T YPEYILP+LVHALAHHSCP+ DECKDV+A+EL+YR++Y
Sbjct: 952 IQADTNSSTTYPEYILPYLVHALAHHSCPNTDECKDVKAFELIYRQLY 999

BLAST of CSPI01G13640 vs. TrEMBL
Match: A0A061GGJ0_THECC (Androgen induced inhibitor of proliferation / pds5 isoform 1 OS=Theobroma cacao GN=TCM_030447 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-15
Identity = 35/48 (72.92%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           +Q++TNS+T YPEYILP+LVHALAHHSCP+ DECKDV+A+EL+YR++Y
Sbjct: 952 IQADTNSSTTYPEYILPYLVHALAHHSCPNTDECKDVKAFELIYRQLY 999

BLAST of CSPI01G13640 vs. TAIR10
Match: AT5G47690.3 (AT5G47690.3 binding)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-16
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1

Query: 2    QSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSK 61
            Q++ NS T YP +ILP+LVHALAHHSCPDV++CKDV+ YE++YR++Y +      L   +
Sbjct: 953  QTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISML--LHKEE 1012

Query: 62   EGLTSKAAEER 73
            +G T    +ER
Sbjct: 1013 DGKTEDIDKER 1021

BLAST of CSPI01G13640 vs. TAIR10
Match: AT3G47950.1 (AT3G47950.1 H(+)-ATPase 4)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-08
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 1

Query: 49 PLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          P++  +ENLRCSKEGLT++AA+ERL +F  +KLEEKK
Sbjct: 26 PIEEVFENLRCSKEGLTTQAADERLALFGHNKLEEKK 62

BLAST of CSPI01G13640 vs. TAIR10
Match: AT5G62670.1 (AT5G62670.1 H(+)-ATPase 11)

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-08
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          D +E  +    E V  +  P++  +E+LRCS+EGLT++AA+ERL +F  +KLEEKK
Sbjct: 3  DKEEVLEAVLKETVDLENVPIEEVFESLRCSREGLTTEAADERLALFGHNKLEEKK 58

BLAST of CSPI01G13640 vs. TAIR10
Match: AT3G60330.1 (AT3G60330.1 H(+)-ATPase 7)

HSP 1 Score: 46.6 bits (109), Expect = 9.9e-06
Identity = 21/56 (37.50%), Postives = 36/56 (64.29%), Query Frame = 1

Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          D++  K +    +    + P++  +++L+C+KEGLTS   +ERL +F  +KLEEKK
Sbjct: 3  DIEALKAITTESIDLENV-PVEEVFQHLKCTKEGLTSNEVQERLTLFGYNKLEEKK 57

BLAST of CSPI01G13640 vs. NCBI nr
Match: gi|700209732|gb|KGN64828.1| (hypothetical protein Csa_1G120440 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-45
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 1

Query: 1  MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
          MQSETNSATAYPEYILP+LVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS
Sbjct: 1  MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60

Query: 61 KEGLTSKAAEERLKIFSDDKLEEKKLMLHLLVAL 95
          KEGLTS+AAEERLKIFSDDKLEEKKLMLHLLVAL
Sbjct: 61 KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVAL 94

BLAST of CSPI01G13640 vs. NCBI nr
Match: gi|659127303|ref|XP_008463634.1| (PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-17
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETN  TAYPEYILP+LVHALAHHSCPDVDECKDV+AYELVYR+++ +     +++  
Sbjct: 952  MQSETNPTTAYPEYILPYLVHALAHHSCPDVDECKDVKAYELVYRRLHLILSLLVHKDED 1011

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1012 LKSEANSTKEKENVSTIFS 1030

BLAST of CSPI01G13640 vs. NCBI nr
Match: gi|700209896|gb|KGN64992.1| (hypothetical protein Csa_1G172630 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETNS TAYPEYILP+LVHALAH+SCPDVDECKD++AYELVY +++ +     +++  
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSLLVHKDED 1011

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1012 LKSEANSTKEKENVSTIFS 1030

BLAST of CSPI01G13640 vs. NCBI nr
Match: gi|778659622|ref|XP_011654767.1| (PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETNS TAYPEYILP+LVHALAH+SCPDVDECKD++AYELVY +++ +     +++  
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSLLVHKDED 1011

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1012 LKSEANSTKEKENVSTIFS 1030

BLAST of CSPI01G13640 vs. NCBI nr
Match: gi|778659626|ref|XP_011654769.1| (PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETNS TAYPEYILP+LVHALAH+SCPDVDECKD++AYELVY +++ +     +++  
Sbjct: 952  MQSETNSTTAYPEYILPYLVHALAHYSCPDVDECKDIKAYELVYMRLHLILSLLVHKDED 1011

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1012 LKSEANSTKEKENVSTIFS 1030

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PMA3_NICPL6.5e-0752.83Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1[more]
PMA4_ARATH6.5e-0764.86ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2[more]
PMA1_NICPL8.4e-0752.83Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1[more]
PMA11_ARATH8.4e-0746.43ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1[more]
PMA1_SOLLC1.4e-0650.94Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LSQ4_CUCSA1.9e-4597.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G120440 PE=4 SV=1[more]
A0A0A0LW18_CUCSA3.1e-1656.96Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172630 PE=4 SV=1[more]
W9QL19_9ROSA3.4e-1575.00Uncharacterized protein OS=Morus notabilis GN=L484_010621 PE=4 SV=1[more]
A0A061GHF7_THECC4.5e-1572.92Androgen induced inhibitor of proliferation / pds5 isoform 2 OS=Theobroma cacao ... [more]
A0A061GGJ0_THECC4.5e-1572.92Androgen induced inhibitor of proliferation / pds5 isoform 1 OS=Theobroma cacao ... [more]
Match NameE-valueIdentityDescription
AT5G47690.34.7e-1650.70 binding[more]
AT3G47950.13.6e-0864.86 H(+)-ATPase 4[more]
AT5G62670.14.8e-0846.43 H(+)-ATPase 11[more]
AT3G60330.19.9e-0637.50 H(+)-ATPase 7[more]
Match NameE-valueIdentityDescription
gi|700209732|gb|KGN64828.1|2.7e-4597.87hypothetical protein Csa_1G120440 [Cucumis sativus][more]
gi|659127303|ref|XP_008463634.1|5.3e-1759.49PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A... [more]
gi|700209896|gb|KGN64992.1|4.5e-1656.96hypothetical protein Csa_1G172630 [Cucumis sativus][more]
gi|778659622|ref|XP_011654767.1|4.5e-1656.96PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Cucumis ... [more]
gi|778659626|ref|XP_011654769.1|4.5e-1656.96PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Cucumis ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0008150 biological_process
biological_process GO:0009556 microsporogenesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13640.1CSPI01G13640.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12663ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDcoord: 2..48
score: 2.8
NoneNo IPR availablePANTHERPTHR12663:SF0PDS5coord: 2..48
score: 2.8