Csa1G119390 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G119390
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9029948 .. 9030309 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATGCGGCTTGTAGCAAGCTACGACTAATAGGCTTACCAAAAATAACGAAGAGCAACAGTTTGGAAAAAACGGACAGCATGGGACGAACAGCAACAGCTTGGAAAAAATGGGCAACATGGGACGAAGCTCACTTGACTGGATGGAGGTCTTTGACTTCATCTGAGCAAGCGGTGAACAATGAAGAAATCGGTGAATGTTGGACGATCAACGACGAGGGACGGTGGCAGCAACTTAGGGTAATGCGAGAGGAAGAATAATATTAGTAGTGGAATAGGGTTGCATGCTGATCAAGGTGGTCACTGACGAAATTATCGAAAATGACAAACGAAGGTTGGCCTGCAACGGTCACTAGATGTGGC

mRNA sequence

ATGGGACGAACAGCAACAGCTTGGAAAAAATGGGCAACATGGGACGAAGCTCACTTGACTGGATGGAGGTCTTTGACTTCATCTGAGCAAGCGGTGAACAATGAAGAAATCGGTGAATGTTGGACGATCAACGACGAGGGACGGTGGCAGCAACTTAGGGTAATGCGAGAGGAAGAATAA

Coding sequence (CDS)

ATGGGACGAACAGCAACAGCTTGGAAAAAATGGGCAACATGGGACGAAGCTCACTTGACTGGATGGAGGTCTTTGACTTCATCTGAGCAAGCGGTGAACAATGAAGAAATCGGTGAATGTTGGACGATCAACGACGAGGGACGGTGGCAGCAACTTAGGGTAATGCGAGAGGAAGAATAA

Protein sequence

MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE*
Homology
[Close]
BLAST of Csa1G119390 vs. TrEMBL
Match: A0A0A0LXV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119390 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 60
          MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE
Sbjct: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 59

[Close]
BLAST of Csa1G119390 vs. NCBI nr
Match: gi|700209725|gb|KGN64821.1| (hypothetical protein Csa_1G119390 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 60
          MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE
Sbjct: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 59

The following BLAST results are available for this feature:
BLAST of Csa1G119390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXV9_CUCSA1.7e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119390 PE=4 SV=1[more]
BLAST of Csa1G119390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209725|gb|KGN64821.1|2.5e-28100.00hypothetical protein Csa_1G119390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G119390.1Csa1G119390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G119390CsGy1G013600Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G119390Silver-seed gourdcarcuB0360
Csa1G119390Silver-seed gourdcarcuB0472
Csa1G119390Watermelon (97103) v2cuwmbB034
Csa1G119390Wax gourdcuwgoB016
Csa1G119390Wax gourdcuwgoB049
Csa1G119390Cucumber (Chinese Long) v2cucuB018
Csa1G119390Cucurbita maxima (Rimu)cmacuB203
Csa1G119390Cucurbita maxima (Rimu)cmacuB431
Csa1G119390Cucurbita moschata (Rifu)cmocuB188
Csa1G119390Cucurbita moschata (Rifu)cmocuB421
Csa1G119390Melon (DHL92) v3.5.1cumeB015
Csa1G119390Watermelon (Charleston Gray)cuwcgB037
Csa1G119390Watermelon (97103) v1cuwmB010
Csa1G119390Cucurbita pepo (Zucchini)cpecuB516
Csa1G119390Cucurbita pepo (Zucchini)cpecuB528
Csa1G119390Bottle gourd (USVL1VR-Ls)culsiB044
Csa1G119390Cucumber (Gy14) v2cgybcuB097
Csa1G119390Melon (DHL92) v3.6.1cumedB010