Csa1G119390.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G119390.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9029948 .. 9030309 (-)
Sequence length180
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATGCGGCTTGTAGCAAGCTACGACTAATAGGCTTACCAAAAATAACGAAGAGCAACAGTTTGGAAAAAACGGACAGCATGGGACGAACAGCAACAGCTTGGAAAAAATGGGCAACATGGGACGAAGCTCACTTGACTGGATGGAGGTCTTTGACTTCATCTGAGCAAGCGGTGAACAATGAAGAAATCGGTGAATGTTGGACGATCAACGACGAGGGACGGTGGCAGCAACTTAGGGTAATGCGAGAGGAAGAATAATATTAGTAGTGGAATAGGGTTGCATGCTGATCAAGGTGGTCACTGACGAAATTATCGAAAATGACAAACGAAGGTTGGCCTGCAACGGTCACTAGATGTGGC

mRNA sequence

ATGGGACGAACAGCAACAGCTTGGAAAAAATGGGCAACATGGGACGAAGCTCACTTGACTGGATGGAGGTCTTTGACTTCATCTGAGCAAGCGGTGAACAATGAAGAAATCGGTGAATGTTGGACGATCAACGACGAGGGACGGTGGCAGCAACTTAGGGTAATGCGAGAGGAAGAATAA

Coding sequence (CDS)

ATGGGACGAACAGCAACAGCTTGGAAAAAATGGGCAACATGGGACGAAGCTCACTTGACTGGATGGAGGTCTTTGACTTCATCTGAGCAAGCGGTGAACAATGAAGAAATCGGTGAATGTTGGACGATCAACGACGAGGGACGGTGGCAGCAACTTAGGGTAATGCGAGAGGAAGAATAA

Protein sequence

MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE*
Homology
[Close]
BLAST of Csa1G119390.1 vs. TrEMBL
Match: A0A0A0LXV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119390 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 60
          MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE
Sbjct: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 59

[Close]
BLAST of Csa1G119390.1 vs. NCBI nr
Match: gi|700209725|gb|KGN64821.1| (hypothetical protein Csa_1G119390 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 60
          MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE
Sbjct: 1  MGRTATAWKKWATWDEAHLTGWRSLTSSEQAVNNEEIGECWTINDEGRWQQLRVMREEE 59

The following BLAST results are available for this feature:
BLAST of Csa1G119390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXV9_CUCSA1.7e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119390 PE=4 SV=1[more]
BLAST of Csa1G119390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209725|gb|KGN64821.1|2.5e-28100.00hypothetical protein Csa_1G119390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G119390Csa1G119390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G119390.1Csa1G119390.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G119390.1.utr3p1Csa1G119390.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G119390.1.cds1Csa1G119390.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G119390.1.utr5p1Csa1G119390.1.utr5p1five_prime_UTR